RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 OR2J3O76001 311 aa11.54□□□□□ -0.56
LIMS3-206ENST00000631420 IGLV1-40P01703 118 aa11.54□□□□□ -0.56
LIMS3-206ENST00000631420 MDKP21741 143 aaPredicted RBP11.54□□□□□ -0.56
LIMS3-206ENST00000631420 NKX2-5P52952 324 aaPredicted RBP11.54□□□□□ -0.56
LIMS3-206ENST00000631420 AP2S1P53680 142 aaPredicted RBP11.54□□□□□ -0.56
LIMS3-206ENST00000631420 RAB11AP62491 216 aa11.54□□□□□ -0.56
LIMS3-206ENST00000631420 OR8G2PQ6IF36 304 aa11.54□□□□□ -0.56
LIMS3-206ENST00000631420 NOXA1Q86UR1 476 aa11.54□□□□□ -0.56
LIMS3-206ENST00000631420 TMEM217Q8N7C4 229 aa11.54□□□□□ -0.56
LIMS3-206ENST00000631420 PINX1Q96BK5 328 aaKnown RBP11.54□□□□□ -0.56
LIMS3-206ENST00000631420 PSMB11A5LHX3 300 aa11.53□□□□□ -0.56
LIMS3-206ENST00000631420 HMSDA8MTL9 139 aa11.53□□□□□ -0.56
LIMS3-206ENST00000631420 BOLA2-SMG1P6H3BVE0 249 aa11.53□□□□□ -0.56
LIMS3-206ENST00000631420 NDUFB8O95169 186 aa11.53□□□□□ -0.56
LIMS3-206ENST00000631420 IGHV3-48P01763 117 aa11.53□□□□□ -0.56
LIMS3-206ENST00000631420 CXCL2P19875 107 aa11.53□□□□□ -0.56
LIMS3-206ENST00000631420 EIF2B2P49770 351 aaKnown RBP11.53□□□□□ -0.56
LIMS3-206ENST00000631420 HYLS1Q96M11 299 aa11.53□□□□□ -0.56
LIMS3-206ENST00000631420 AQP10Q96PS8 301 aa11.53□□□□□ -0.56
LIMS3-206ENST00000631420 SLC25A31Q9H0C2 315 aa11.53□□□□□ -0.56
LIMS3-206ENST00000631420 FNDC4Q9H6D8 234 aaPredicted RBP11.53□□□□□ -0.56
LIMS3-206ENST00000631420 TRBV9A0A0B4J1U6 114 aa11.52□□□□□ -0.57
LIMS3-206ENST00000631420 PRSS46E5RG02 174 aa11.52□□□□□ -0.57
LIMS3-206ENST00000631420 IGHG4P01861 327 aa11.52□□□□□ -0.57
LIMS3-206ENST00000631420 PF4V1P10720 104 aa11.52□□□□□ -0.57
LIMS3-206ENST00000631420 SULT1A1P50225 295 aa11.52□□□□□ -0.57
LIMS3-206ENST00000631420 ATP5IP56385 69 aaPredicted RBP11.52□□□□□ -0.57
LIMS3-206ENST00000631420 HIST2H2BDQ6DRA6 164 aa11.52□□□□□ -0.57
LIMS3-206ENST00000631420 INO80EQ8NBZ0 244 aaPredicted RBP11.52□□□□□ -0.57
LIMS3-206ENST00000631420 OR4F5Q8NH21 305 aa11.52□□□□□ -0.57
LIMS3-206ENST00000631420 GON7Q9BXV9 100 aa11.52□□□□□ -0.57
LIMS3-206ENST00000631420 MFFQ9GZY8 342 aa11.52□□□□□ -0.57
LIMS3-206ENST00000631420 ZC4H2Q9NQZ6 224 aa11.52□□□□□ -0.57
LIMS3-206ENST00000631420 FBXL7Q9UJT9 491 aa11.52□□□□□ -0.57
LIMS3-206ENST00000631420 S4R3C0 116 aa11.52□□□□□ -0.57
LIMS3-206ENST00000631420 I3L2K1 104 aa11.51□□□□□ -0.57
LIMS3-206ENST00000631420 HAX1O00165 279 aa11.51□□□□□ -0.57
LIMS3-206ENST00000631420 MT-CO2P00403 227 aa11.51□□□□□ -0.57
LIMS3-206ENST00000631420 NUP62P37198 522 aaPredicted RBP11.51□□□□□ -0.57
LIMS3-206ENST00000631420 SLC35B1P78383 322 aa11.51□□□□□ -0.57
LIMS3-206ENST00000631420 RHOGP84095 191 aa11.51□□□□□ -0.57
LIMS3-206ENST00000631420 KLK9Q2XQG4 91 aa11.51□□□□□ -0.57
LIMS3-206ENST00000631420 LGALSLQ3ZCW2 172 aaPredicted RBP11.51□□□□□ -0.57
LIMS3-206ENST00000631420 ACOT7LQ6ZUV0 252 aa11.51□□□□□ -0.57
LIMS3-206ENST00000631420 KLHDC1Q8N7A1 406 aa11.51□□□□□ -0.57
LIMS3-206ENST00000631420 OR10P1Q8NGE3 313 aa11.51□□□□□ -0.57
LIMS3-206ENST00000631420 OR1L6Q8NGR2 347 aa11.51□□□□□ -0.57
LIMS3-206ENST00000631420 SMIM3Q9BZL3 60 aa11.51□□□□□ -0.57
LIMS3-206ENST00000631420 KLK9Q9UKQ9 250 aa11.51□□□□□ -0.57
LIMS3-206ENST00000631420 RNF114Q9Y508 228 aa11.51□□□□□ -0.57
LIMS3-206ENST00000631420 HSPB11Q9Y547 144 aa11.51□□□□□ -0.57
LIMS3-206ENST00000631420 C2CD3Q4AC94 2353 aa11.51□□□□□ -0.57
LIMS3-206ENST00000631420 CLPSL1A2RUU4 121 aa11.5□□□□□ -0.57
LIMS3-206ENST00000631420 K7EIM0 57 aa11.5□□□□□ -0.57
LIMS3-206ENST00000631420 TRGV3P03979 118 aa11.5□□□□□ -0.57
LIMS3-206ENST00000631420 PSMB8P28062 276 aa11.5□□□□□ -0.57
LIMS3-206ENST00000631420 OPRK1P41145 380 aa11.5□□□□□ -0.57
LIMS3-206ENST00000631420 RAB9AP51151 201 aa11.5□□□□□ -0.57
LIMS3-206ENST00000631420 CD69Q07108 199 aa11.5□□□□□ -0.57
LIMS3-206ENST00000631420 TEX38Q6PEX7 206 aa11.5□□□□□ -0.57
LIMS3-206ENST00000631420 STX12Q86Y82 276 aa11.5□□□□□ -0.57
LIMS3-206ENST00000631420 LURAP1LQ8IV03 231 aa11.5□□□□□ -0.57
LIMS3-206ENST00000631420 OR5AU1Q8NGC0 362 aa11.5□□□□□ -0.57
LIMS3-206ENST00000631420 RNASEH2CQ8TDP1 164 aaKnown RBP11.5□□□□□ -0.57
LIMS3-206ENST00000631420 WIPF2Q8TF74 440 aaPredicted RBP11.5□□□□□ -0.57
LIMS3-206ENST00000631420 MRPL36Q9P0J6 103 aaKnown RBP11.5□□□□□ -0.57
LIMS3-206ENST00000631420 SETD2Q9BYW2 2564 aaPredicted RBP11.5□□□□□ -0.57
LIMS3-206ENST00000631420 MFSD2BA6NFX1 497 aa11.5□□□□□ -0.57
LIMS3-206ENST00000631420 IGHV3-23P01764 117 aa11.5□□□□□ -0.57
LIMS3-206ENST00000631420 HIST1H1BP16401 226 aaKnown RBP11.5□□□□□ -0.57
LIMS3-206ENST00000631420 PROK1P58294 105 aa11.5□□□□□ -0.57
LIMS3-206ENST00000631420 TPPP2P59282 170 aa11.5□□□□□ -0.57
LIMS3-206ENST00000631420 KIAA0141Q14154 515 aaPredicted RBP11.5□□□□□ -0.57
LIMS3-206ENST00000631420 KRTAP24-1Q3LI83 254 aa11.5□□□□□ -0.57
LIMS3-206ENST00000631420 TCTEX1D4Q5JR98 221 aa11.5□□□□□ -0.57
LIMS3-206ENST00000631420 LAMTOR1Q6IAA8 161 aa11.5□□□□□ -0.57
LIMS3-206ENST00000631420 OR5C1Q8NGR4 320 aa11.5□□□□□ -0.57
LIMS3-206ENST00000631420 SCARB1Q8WTV0 552 aa11.5□□□□□ -0.57
LIMS3-206ENST00000631420 WFDC1Q9HC57 220 aa11.5□□□□□ -0.57
LIMS3-206ENST00000631420 H3BUA1 57 aa11.49□□□□□ -0.57
LIMS3-206ENST00000631420 BRI3O95415 125 aa11.49□□□□□ -0.57
LIMS3-206ENST00000631420 RPLP1P05386 114 aaKnown RBP11.49□□□□□ -0.57
LIMS3-206ENST00000631420 HNRNPCP07910 306 aaKnown RBP eCLIP11.49□□□□□ -0.57
LIMS3-206ENST00000631420 BAXQ07812 192 aa11.49□□□□□ -0.57
LIMS3-206ENST00000631420 SLC38A11Q08AI6 406 aa11.49□□□□□ -0.57
LIMS3-206ENST00000631420 CLINT1Q14677 625 aa11.49□□□□□ -0.57
LIMS3-206ENST00000631420 C15orf32Q32M92 178 aa11.49□□□□□ -0.57
LIMS3-206ENST00000631420 CORTO00230 105 aa11.48□□□□□ -0.57
LIMS3-206ENST00000631420 CYB5BO43169 146 aa11.48□□□□□ -0.57
LIMS3-206ENST00000631420 ELANEP08246 267 aa11.48□□□□□ -0.57
LIMS3-206ENST00000631420 S100A11P31949 105 aa11.48□□□□□ -0.57
LIMS3-206ENST00000631420 GPX4P36969 197 aaPredicted RBP11.48□□□□□ -0.57
LIMS3-206ENST00000631420 KRTAP10-3P60369 221 aa11.48□□□□□ -0.57
LIMS3-206ENST00000631420 FOXE3Q13461 319 aa11.48□□□□□ -0.57
LIMS3-206ENST00000631420 OR2F1Q13607 317 aa11.48□□□□□ -0.57
LIMS3-206ENST00000631420 EXOSC2Q13868 293 aaKnown RBP11.48□□□□□ -0.57
LIMS3-206ENST00000631420 GAMTQ14353 236 aa11.48□□□□□ -0.57
LIMS3-206ENST00000631420 SLC16A13Q7RTY0 426 aa11.48□□□□□ -0.57
LIMS3-206ENST00000631420 C9orf62Q8N4C0 152 aa11.48□□□□□ -0.57
LIMS3-206ENST00000631420 KCNRGQ8N5I3 272 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms