RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 MS4A10Q96PG2 267 aa10.35□□□□□ -0.75
LINC00540-203ENST00000631321 COMMD5Q9GZQ3 224 aa10.35□□□□□ -0.75
LINC00540-203ENST00000631321 TTC28Q96AY4 2481 aa10.35□□□□□ -0.75
LINC00540-203ENST00000631321 ISLRO14498 428 aa10.35□□□□□ -0.75
LINC00540-203ENST00000631321 IGLV2-8P01709 118 aa10.35□□□□□ -0.75
LINC00540-203ENST00000631321 CCL3L1P16619 93 aa10.35□□□□□ -0.75
LINC00540-203ENST00000631321 Q0VG73 95 aa10.35□□□□□ -0.75
LINC00540-203ENST00000631321 PDPNQ86YL7 162 aa10.35□□□□□ -0.75
LINC00540-203ENST00000631321 FLYWCH2Q96CP2 140 aaKnown RBP10.35□□□□□ -0.75
LINC00540-203ENST00000631321 IGF2BP2-AS1Q96M15 143 aa10.35□□□□□ -0.75
LINC00540-203ENST00000631321 TNCP24821 2201 aa10.35□□□□□ -0.75
LINC00540-203ENST00000631321 A0A0G2JNJ9 132 aa10.34□□□□□ -0.75
LINC00540-203ENST00000631321 TMEM178BH3BS89 294 aa10.34□□□□□ -0.75
LINC00540-203ENST00000631321 CRISP2P16562 243 aa10.34□□□□□ -0.75
LINC00540-203ENST00000631321 CHRNB4P30926 498 aa10.34□□□□□ -0.75
LINC00540-203ENST00000631321 PPOXP50336 477 aa10.34□□□□□ -0.75
LINC00540-203ENST00000631321 CX3CL1P78423 397 aa10.34□□□□□ -0.75
LINC00540-203ENST00000631321 TIGITQ495A1 244 aa10.34□□□□□ -0.75
LINC00540-203ENST00000631321 OR4C13Q8NGP0 309 aa10.34□□□□□ -0.75
LINC00540-203ENST00000631321 VSTM2AQ8TAG5 236 aa10.34□□□□□ -0.75
LINC00540-203ENST00000631321 SLC25A2Q9BXI2 301 aa10.34□□□□□ -0.75
LINC00540-203ENST00000631321 Q9UFV3 132 aa10.34□□□□□ -0.75
LINC00540-203ENST00000631321 NAGKQ9UJ70 344 aa10.34□□□□□ -0.75
LINC00540-203ENST00000631321 DYSFO75923 2080 aa10.34□□□□□ -0.75
LINC00540-203ENST00000631321 GRIFINA4D1Z8 144 aa10.34□□□□□ -0.75
LINC00540-203ENST00000631321 CGB1A6NKQ9 187 aa10.34□□□□□ -0.75
LINC00540-203ENST00000631321 THBDP07204 575 aa10.34□□□□□ -0.75
LINC00540-203ENST00000631321 ZNF137PP52743 207 aa10.34□□□□□ -0.75
LINC00540-203ENST00000631321 C1orf194Q5T5A4 169 aa10.34□□□□□ -0.75
LINC00540-203ENST00000631321 DOLPP1Q86YN1 238 aa10.34□□□□□ -0.75
LINC00540-203ENST00000631321 ST6GALNAC6Q969X2 333 aa10.34□□□□□ -0.75
LINC00540-203ENST00000631321 CNOT1A5YKK6 2376 aaKnown RBP10.33□□□□□ -0.76
LINC00540-203ENST00000631321 PPIAL4EA0A075B759 164 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 KIR2DL5BA0A0G2JN68 375 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 KIR2DL5BA0A0G2JPC4 375 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 E7EUB6 86 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 PPIAL4DF5H284 164 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 FCN1O00602 326 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 SCGB1D1O95968 90 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 IGLV2-23P01705 113 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 MT-ND6P03923 174 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 PPIAL4FP0DN26 164 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 IER3P46695 156 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 TPPP2P59282 170 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 SUMO1P63165 101 aaKnown RBP10.33□□□□□ -0.76
LINC00540-203ENST00000631321 COX19Q49B96 90 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 SSX8Q7RTT4 187 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 WFDC8Q8IUA0 241 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 OR8I2Q8N0Y5 310 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 KIR2DL5AQ8N109 375 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 OR2T6Q8NHC8 308 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 TMEM186Q96B77 213 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 DNAJC4Q9NNZ3 241 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 POLR3KQ9Y2Y1 108 aaPredicted RBP10.33□□□□□ -0.76
LINC00540-203ENST00000631321 PPIAL4AQ9Y536 164 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 A0A1B0GV90 55 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 TAS2R60P59551 318 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 SSTP61278 116 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 RANP62826 216 aaKnown RBP10.33□□□□□ -0.76
LINC00540-203ENST00000631321 RPL19P84098 196 aaKnown RBP10.33□□□□□ -0.76
LINC00540-203ENST00000631321 WT1-ASQ06250 92 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 BSPH1Q075Z2 132 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 WDR73Q6P4I2 378 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 THAP8Q8NA92 274 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 ST6GALNAC3Q8NDV1 305 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 SAP30LQ9HAJ7 183 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 TMEM106BQ9NUM4 274 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 JKAMPQ9P055 326 aa10.33□□□□□ -0.76
LINC00540-203ENST00000631321 FRMD6-AS1P0C7T7 363 aa10.32□□□□□ -0.76
LINC00540-203ENST00000631321 TDGF1P3P51864 188 aa10.32□□□□□ -0.76
LINC00540-203ENST00000631321 DLX6P56179 175 aa10.32□□□□□ -0.76
LINC00540-203ENST00000631321 MORN5Q5VZ52 161 aa10.32□□□□□ -0.76
LINC00540-203ENST00000631321 Q6ZWC4 215 aa10.32□□□□□ -0.76
LINC00540-203ENST00000631321 OR10X1Q8NGY0 326 aa10.32□□□□□ -0.76
LINC00540-203ENST00000631321 RNASE7Q9H1E1 156 aaKnown RBP10.32□□□□□ -0.76
LINC00540-203ENST00000631321 ZNF430Q9H8G1 570 aaPredicted RBP10.32□□□□□ -0.76
LINC00540-203ENST00000631321 CDC42EP3Q9UKI2 254 aa10.32□□□□□ -0.76
LINC00540-203ENST00000631321 ICE1Q9Y2F5 2266 aa10.32□□□□□ -0.76
LINC00540-203ENST00000631321 SMIM27A0A1W2PRY6 76 aa10.32□□□□□ -0.76
LINC00540-203ENST00000631321 SNURFLB1AK76 121 aa10.32□□□□□ -0.76
LINC00540-203ENST00000631321 SERF1AO75920 110 aa10.32□□□□□ -0.76
LINC00540-203ENST00000631321 REG1BP48304 166 aa10.32□□□□□ -0.76
LINC00540-203ENST00000631321 ZCCHC24Q8N2G6 241 aaKnown RBP10.32□□□□□ -0.76
LINC00540-203ENST00000631321 OR1L4Q8NGR5 311 aa10.32□□□□□ -0.76
LINC00540-203ENST00000631321 FNDC4Q9H6D8 234 aaPredicted RBP10.32□□□□□ -0.76
LINC00540-203ENST00000631321 WASHC3Q9Y3C0 194 aa10.32□□□□□ -0.76
LINC00540-203ENST00000631321 IGKV1D-37A0A075B6S9 117 aa10.31□□□□□ -0.76
LINC00540-203ENST00000631321 PRRG2O14669 202 aa10.31□□□□□ -0.76
LINC00540-203ENST00000631321 NDUFB3O43676 98 aa10.31□□□□□ -0.76
LINC00540-203ENST00000631321 FSTL3O95633 263 aa10.31□□□□□ -0.76
LINC00540-203ENST00000631321 SUB1P53999 127 aaKnown RBP eCLIP10.31□□□□□ -0.76
LINC00540-203ENST00000631321 UBE2L3P68036 154 aaKnown RBP10.31□□□□□ -0.76
LINC00540-203ENST00000631321 SSBP2P81877 361 aaPredicted RBP10.31□□□□□ -0.76
LINC00540-203ENST00000631321 LRRC10Q5BKY1 277 aa10.31□□□□□ -0.76
LINC00540-203ENST00000631321 TMEM136Q6ZRR5 245 aa10.31□□□□□ -0.76
LINC00540-203ENST00000631321 MISP3Q96FF7 219 aa10.31□□□□□ -0.76
LINC00540-203ENST00000631321 TRAV5A0A0B4J249 113 aa10.31□□□□□ -0.76
LINC00540-203ENST00000631321 TCRBV4S1A1TA0A5B7 111 aa10.31□□□□□ -0.76
LINC00540-203ENST00000631321 SNRPCP09234 159 aaKnown RBP10.31□□□□□ -0.76
LINC00540-203ENST00000631321 DIAPH2-AS1Q14236 149 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms