RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 RNF125Q96EQ8 232 aa9.46□□□□□ -0.89
CLIP1-219ENST00000620786 RTBDNQ9BSG5 229 aaPredicted RBP9.46□□□□□ -0.89
CLIP1-219ENST00000620786 F11RQ9Y624 299 aaKnown RBP9.46□□□□□ -0.89
CLIP1-219ENST00000620786 WFDC12Q8WWY7 111 aa9.46□□□□□ -0.89
CLIP1-219ENST00000620786 PRELID3AQ96N28 172 aa9.46□□□□□ -0.89
CLIP1-219ENST00000620786 VGLL1Q99990 258 aa9.46□□□□□ -0.89
CLIP1-219ENST00000620786 ERVK11-1P61568 191 aa9.46□□□□□ -0.9
CLIP1-219ENST00000620786 TMEM200BQ69YZ2 307 aa9.46□□□□□ -0.9
CLIP1-219ENST00000620786 KCNS1Q96KK3 526 aa9.46□□□□□ -0.9
CLIP1-219ENST00000620786 RP1L1Q8IWN7 2480 aaPredicted RBP9.46□□□□□ -0.9
CLIP1-219ENST00000620786 THADAQ6YHU6 1953 aa9.46□□□□□ -0.9
CLIP1-219ENST00000620786 CRPP02741 224 aa9.46□□□□□ -0.9
CLIP1-219ENST00000620786 OTORQ9NRC9 128 aa9.46□□□□□ -0.9
CLIP1-219ENST00000620786 H3BRM9 83 aa9.46□□□□□ -0.9
CLIP1-219ENST00000620786 K7ENP7 123 aa9.46□□□□□ -0.9
CLIP1-219ENST00000620786 TMEM42Q69YG0 159 aa9.46□□□□□ -0.9
CLIP1-219ENST00000620786 OR10S1Q8NGN2 331 aa9.46□□□□□ -0.9
CLIP1-219ENST00000620786 DPH3P1Q9H4G8 78 aa9.46□□□□□ -0.9
CLIP1-219ENST00000620786 TRBV9A0A0B4J1U6 114 aa9.45□□□□□ -0.9
CLIP1-219ENST00000620786 SCO2A0A1W2PP80 73 aa9.45□□□□□ -0.9
CLIP1-219ENST00000620786 MLNRO43193 412 aa9.45□□□□□ -0.9
CLIP1-219ENST00000620786 RAMP3O60896 148 aa9.45□□□□□ -0.9
CLIP1-219ENST00000620786 SCGB1A1P11684 91 aa9.45□□□□□ -0.9
CLIP1-219ENST00000620786 JOSD1Q15040 202 aaPredicted RBP9.45□□□□□ -0.9
CLIP1-219ENST00000620786 GPR61Q9BZJ8 451 aa9.45□□□□□ -0.9
CLIP1-219ENST00000620786 TMEM160Q9NX00 188 aa9.45□□□□□ -0.9
CLIP1-219ENST00000620786 H3BUX3 64 aa9.45□□□□□ -0.9
CLIP1-219ENST00000620786 Q6ZS92 163 aa9.45□□□□□ -0.9
CLIP1-219ENST00000620786 FER1L6-AS1Q8NA97 138 aa9.45□□□□□ -0.9
CLIP1-219ENST00000620786 C1QTNF9BB2RNN3 333 aa9.45□□□□□ -0.9
CLIP1-219ENST00000620786 RPLP1P05386 114 aaKnown RBP9.45□□□□□ -0.9
CLIP1-219ENST00000620786 C1QTNF9P0C862 333 aa9.45□□□□□ -0.9
CLIP1-219ENST00000620786 FOLR2P14207 255 aa9.45□□□□□ -0.9
CLIP1-219ENST00000620786 ZNF415Q09FC8 603 aa9.45□□□□□ -0.9
CLIP1-219ENST00000620786 SRSF7Q16629 238 aaKnown RBP eCLIP9.45□□□□□ -0.9
CLIP1-219ENST00000620786 PSMG4Q5JS54 123 aa9.45□□□□□ -0.9
CLIP1-219ENST00000620786 TPTE2P1Q5T6R2 138 aa9.45□□□□□ -0.9
CLIP1-219ENST00000620786 PAQR4Q8N4S7 273 aaPredicted RBP9.45□□□□□ -0.9
CLIP1-219ENST00000620786 OR1P1Q8NH06 330 aa9.45□□□□□ -0.9
CLIP1-219ENST00000620786 SBF1O95248 1867 aa9.45□□□□□ -0.9
CLIP1-219ENST00000620786 CCL1P22362 96 aa9.45□□□□□ -0.9
CLIP1-219ENST00000620786 MST1P26927 711 aa9.45□□□□□ -0.9
CLIP1-219ENST00000620786 IGHV1-8P0DP01 117 aa9.44□□□□□ -0.9
CLIP1-219ENST00000620786 C12orf54Q6X4T0 127 aa9.44□□□□□ -0.9
CLIP1-219ENST00000620786 SIGLEC15Q6ZMC9 328 aa9.44□□□□□ -0.9
CLIP1-219ENST00000620786 BIVMQ86UB2 503 aa9.44□□□□□ -0.9
CLIP1-219ENST00000620786 RCC1LQ96I51 464 aaKnown RBP9.44□□□□□ -0.9
CLIP1-219ENST00000620786 RPP21Q9H633 154 aaKnown RBP9.44□□□□□ -0.9
CLIP1-219ENST00000620786 IGKV1D-13A0A0B4J2D9 117 aa9.44□□□□□ -0.9
CLIP1-219ENST00000620786 IGKV1-13P0DP09 117 aa9.44□□□□□ -0.9
CLIP1-219ENST00000620786 CACNG7P62955 275 aa9.44□□□□□ -0.9
CLIP1-219ENST00000620786 LBHQ53QV2 105 aaPredicted RBP9.44□□□□□ -0.9
CLIP1-219ENST00000620786 PRR30Q53SZ7 412 aaPredicted RBP9.44□□□□□ -0.9
CLIP1-219ENST00000620786 SCGB3A1Q96QR1 104 aa9.44□□□□□ -0.9
CLIP1-219ENST00000620786 MBD3L4A6NDZ8 208 aaPredicted RBP9.44□□□□□ -0.9
CLIP1-219ENST00000620786 MBD3L3A6NE82 208 aaPredicted RBP9.44□□□□□ -0.9
CLIP1-219ENST00000620786 MBD3L5A6NJ08 208 aaPredicted RBP9.44□□□□□ -0.9
CLIP1-219ENST00000620786 J3QKU1 62 aa9.44□□□□□ -0.9
CLIP1-219ENST00000620786 EFNA2O43921 213 aa9.44□□□□□ -0.9
CLIP1-219ENST00000620786 LYPD3O95274 346 aa9.44□□□□□ -0.9
CLIP1-219ENST00000620786 CMC4P56277 68 aaPredicted RBP9.44□□□□□ -0.9
CLIP1-219ENST00000620786 CIARTQ8N365 385 aaPredicted RBP9.44□□□□□ -0.9
CLIP1-219ENST00000620786 MBD3L2Q8NHZ7 208 aaPredicted RBP9.44□□□□□ -0.9
CLIP1-219ENST00000620786 C18orf15Q96N68 181 aa9.44□□□□□ -0.9
CLIP1-219ENST00000620786 ZNF257Q9Y2Q1 563 aa9.44□□□□□ -0.9
CLIP1-219ENST00000620786 CBY1Q9Y3M2 126 aa9.44□□□□□ -0.9
CLIP1-219ENST00000620786 RNF223E7ERA6 249 aa9.44□□□□□ -0.9
CLIP1-219ENST00000620786 ERVH48-1M5A8F1 160 aa9.44□□□□□ -0.9
CLIP1-219ENST00000620786 PMCHL1Q16048 86 aa9.44□□□□□ -0.9
CLIP1-219ENST00000620786 OR10J3Q5JRS4 329 aa9.44□□□□□ -0.9
CLIP1-219ENST00000620786 DTX2Q86UW9 622 aa9.44□□□□□ -0.9
CLIP1-219ENST00000620786 ABCA7Q8IZY2 2146 aa9.44□□□□□ -0.9
CLIP1-219ENST00000620786 NYNRINQ9P2P1 1898 aaKnown RBP9.44□□□□□ -0.9
CLIP1-219ENST00000620786 CDX1P47902 265 aaPredicted RBP9.44□□□□□ -0.9
CLIP1-219ENST00000620786 GNG5P63218 68 aa9.44□□□□□ -0.9
CLIP1-219ENST00000620786 ERASQ7Z444 233 aa9.44□□□□□ -0.9
CLIP1-219ENST00000620786 NMBP08949 121 aa9.43□□□□□ -0.9
CLIP1-219ENST00000620786 FBLN7Q53RD9 439 aa9.43□□□□□ -0.9
CLIP1-219ENST00000620786 MINOS1Q5TGZ0 78 aa9.43□□□□□ -0.9
CLIP1-219ENST00000620786 MINOS1-NBL1R4GNA1 71 aa9.43□□□□□ -0.9
CLIP1-219ENST00000620786 CRYGSP22914 178 aa9.43□□□□□ -0.9
CLIP1-219ENST00000620786 PKIAP61925 76 aa9.43□□□□□ -0.9
CLIP1-219ENST00000620786 Q5PR19 223 aa9.43□□□□□ -0.9
CLIP1-219ENST00000620786 ZNF525Q8N782 197 aa9.43□□□□□ -0.9
CLIP1-219ENST00000620786 TRGV11A0A075B6L2 103 aa9.43□□□□□ -0.9
CLIP1-219ENST00000620786 IGKV1-9A0A0C4DH69 117 aa9.43□□□□□ -0.9
CLIP1-219ENST00000620786 BEX4Q9NWD9 120 aaPredicted RBP9.43□□□□□ -0.9
CLIP1-219ENST00000620786 FBLL1A6NHQ2 334 aaKnown RBP9.43□□□□□ -0.9
CLIP1-219ENST00000620786 SELLP14151 372 aa9.43□□□□□ -0.9
CLIP1-219ENST00000620786 LAIR2Q6ISS4 152 aa9.43□□□□□ -0.9
CLIP1-219ENST00000620786 IGHV1-3A0A0C4DH29 117 aa9.43□□□□□ -0.9
CLIP1-219ENST00000620786 SHISA3A0PJX4 238 aa9.43□□□□□ -0.9
CLIP1-219ENST00000620786 LILRA1O75019 489 aa9.43□□□□□ -0.9
CLIP1-219ENST00000620786 ATP5G3P48201 142 aa9.43□□□□□ -0.9
CLIP1-219ENST00000620786 TMEM144Q7Z5S9 345 aa9.43□□□□□ -0.9
CLIP1-219ENST00000620786 BMPERQ8N8U9 685 aa9.43□□□□□ -0.9
CLIP1-219ENST00000620786 C18orf12Q96KH6 178 aa9.43□□□□□ -0.9
CLIP1-219ENST00000620786 THSD7BQ9C0I4 1608 aa9.42□□□□□ -0.9
CLIP1-219ENST00000620786 TMEM250H0YL14 139 aa9.42□□□□□ -0.9
CLIP1-219ENST00000620786 RPL35AP18077 110 aaKnown RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms