RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 PINX1Q96BK5 328 aaKnown RBP12.11□□□□□ -0.47
BRCA1-228ENST00000618469 BSCL2Q96G97 398 aaPredicted RBP12.11□□□□□ -0.47
BRCA1-228ENST00000618469 ENY2Q9NPA8 101 aa12.11□□□□□ -0.47
BRCA1-228ENST00000618469 F8W735 103 aaPredicted RBP12.1□□□□□ -0.47
BRCA1-228ENST00000618469 SNCAP37840 140 aa12.1□□□□□ -0.47
BRCA1-228ENST00000618469 TMEM187Q14656 261 aa12.1□□□□□ -0.47
BRCA1-228ENST00000618469 CD300EQ496F6 205 aaPredicted RBP12.1□□□□□ -0.47
BRCA1-228ENST00000618469 TRIQKQ629K1 86 aa12.1□□□□□ -0.47
BRCA1-228ENST00000618469 Q6ZRM9 215 aa12.1□□□□□ -0.47
BRCA1-228ENST00000618469 OR2K2Q8NGT1 345 aa12.1□□□□□ -0.47
BRCA1-228ENST00000618469 GALNT14Q96FL9 552 aa12.1□□□□□ -0.47
BRCA1-228ENST00000618469 KRTAP17-1Q9BYP8 105 aa12.1□□□□□ -0.47
BRCA1-228ENST00000618469 NDUFA13Q9P0J0 144 aa12.1□□□□□ -0.47
BRCA1-228ENST00000618469 CACNG5Q9UF02 275 aa12.1□□□□□ -0.47
BRCA1-228ENST00000618469 SELENOKQ9Y6D0 94 aa12.1□□□□□ -0.47
BRCA1-228ENST00000618469 TMEM56-RWDD3S4R434 201 aa12.1□□□□□ -0.47
BRCA1-228ENST00000618469 I3L2K1 104 aa12.09□□□□□ -0.47
BRCA1-228ENST00000618469 MT-CO2P00403 227 aa12.09□□□□□ -0.47
BRCA1-228ENST00000618469 NHLRC4P0CG21 123 aaPredicted RBP12.09□□□□□ -0.47
BRCA1-228ENST00000618469 INPP1P49441 399 aa12.09□□□□□ -0.47
BRCA1-228ENST00000618469 SUPT4H1P63272 117 aaKnown RBP12.09□□□□□ -0.47
BRCA1-228ENST00000618469 SPSB3Q6PJ21 355 aa12.09□□□□□ -0.47
BRCA1-228ENST00000618469 GTSCR1Q86UQ5 136 aa12.09□□□□□ -0.47
BRCA1-228ENST00000618469 DEDD2Q8WXF8 326 aa12.09□□□□□ -0.47
BRCA1-228ENST00000618469 TMEM190Q8WZ59 177 aa12.09□□□□□ -0.47
BRCA1-228ENST00000618469 IL22RA2Q969J5 263 aa12.09□□□□□ -0.47
BRCA1-228ENST00000618469 GPR146Q96CH1 333 aa12.09□□□□□ -0.47
BRCA1-228ENST00000618469 CHRDL1Q9BU40 450 aa12.09□□□□□ -0.47
BRCA1-228ENST00000618469 PALMDQ9NP74 551 aa12.09□□□□□ -0.47
BRCA1-228ENST00000618469 KCNIP3Q9Y2W7 256 aa12.09□□□□□ -0.47
BRCA1-228ENST00000618469 INS-IGF2F8WCM5 200 aa12.08□□□□□ -0.48
BRCA1-228ENST00000618469 NXPH3O95157 252 aa12.08□□□□□ -0.48
BRCA1-228ENST00000618469 IGHV3-48P01763 117 aa12.08□□□□□ -0.48
BRCA1-228ENST00000618469 FRMD6-AS1P0C7T7 363 aa12.08□□□□□ -0.48
BRCA1-228ENST00000618469 ANXA3P12429 323 aa12.08□□□□□ -0.48
BRCA1-228ENST00000618469 CBLN1P23435 193 aa12.08□□□□□ -0.48
BRCA1-228ENST00000618469 DEFB114Q30KQ6 69 aa12.08□□□□□ -0.48
BRCA1-228ENST00000618469 TM4SF20Q53R12 229 aa12.08□□□□□ -0.48
BRCA1-228ENST00000618469 ATP6V0BQ99437 205 aa12.08□□□□□ -0.48
BRCA1-228ENST00000618469 ZNF436Q9C0F3 470 aaPredicted RBP12.08□□□□□ -0.48
BRCA1-228ENST00000618469 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.08□□□□□ -0.48
BRCA1-228ENST00000618469 TECRQ9NZ01 308 aaKnown RBP12.08□□□□□ -0.48
BRCA1-228ENST00000618469 UFC1Q9Y3C8 167 aa12.08□□□□□ -0.48
BRCA1-228ENST00000618469 SACSQ9NZJ4 4579 aa12.07□□□□□ -0.48
BRCA1-228ENST00000618469 IGHV3OR16-8A0A075B7F1 116 aa12.07□□□□□ -0.48
BRCA1-228ENST00000618469 IGHV4-30-4P0DP06 118 aa12.07□□□□□ -0.48
BRCA1-228ENST00000618469 RNASE2P10153 161 aaKnown RBP12.07□□□□□ -0.48
BRCA1-228ENST00000618469 ADMP35318 185 aa12.07□□□□□ -0.48
BRCA1-228ENST00000618469 SPCS3P61009 180 aa12.07□□□□□ -0.48
BRCA1-228ENST00000618469 SRPXP78539 464 aa12.07□□□□□ -0.48
BRCA1-228ENST00000618469 BAK1Q16611 211 aa12.07□□□□□ -0.48
BRCA1-228ENST00000618469 GUCA2BQ16661 112 aa12.07□□□□□ -0.48
BRCA1-228ENST00000618469 AARDQ4LEZ3 155 aa12.07□□□□□ -0.48
BRCA1-228ENST00000618469 BTNL8Q6UX41 500 aa12.07□□□□□ -0.48
BRCA1-228ENST00000618469 Q8N1Y9 231 aa12.07□□□□□ -0.48
BRCA1-228ENST00000618469 UXS1Q8NBZ7 420 aa12.07□□□□□ -0.48
BRCA1-228ENST00000618469 MUC7Q8TAX7 377 aa12.07□□□□□ -0.48
BRCA1-228ENST00000618469 MLXQ9UH92 298 aa12.07□□□□□ -0.48
BRCA1-228ENST00000618469 A0A0B4J2A0 478 aa12.06□□□□□ -0.48
BRCA1-228ENST00000618469 NDUFA4O00483 81 aa12.06□□□□□ -0.48
BRCA1-228ENST00000618469 NUPL2O15504 423 aaKnown RBP12.06□□□□□ -0.48
BRCA1-228ENST00000618469 SULT1A3P0DMM9 295 aa12.06□□□□□ -0.48
BRCA1-228ENST00000618469 SULT1A4P0DMN0 295 aa12.06□□□□□ -0.48
BRCA1-228ENST00000618469 VAMP1P23763 118 aa12.06□□□□□ -0.48
BRCA1-228ENST00000618469 SUB1P53999 127 aaKnown RBP eCLIP12.06□□□□□ -0.48
BRCA1-228ENST00000618469 MFAP4P55083 255 aa12.06□□□□□ -0.48
BRCA1-228ENST00000618469 CD81P60033 236 aa12.06□□□□□ -0.48
BRCA1-228ENST00000618469 TMEM61Q8N0U2 210 aa12.06□□□□□ -0.48
BRCA1-228ENST00000618469 LGI3Q8N145 548 aa12.06□□□□□ -0.48
BRCA1-228ENST00000618469 OR52E5Q8NH55 327 aa12.06□□□□□ -0.48
BRCA1-228ENST00000618469 WDR89Q96FK6 387 aaPredicted RBP12.06□□□□□ -0.48
BRCA1-228ENST00000618469 SLC25A21Q9BQT8 299 aaPredicted RBP12.06□□□□□ -0.48
BRCA1-228ENST00000618469 C20orf24Q9BUV8 137 aa12.06□□□□□ -0.48
BRCA1-228ENST00000618469 DAZ1Q9NQZ3 744 aaKnown RBP12.06□□□□□ -0.48
BRCA1-228ENST00000618469 SHPKQ9UHJ6 478 aa12.06□□□□□ -0.48
BRCA1-228ENST00000618469 LINC00854A0A1B0GVQ3 168 aa12.05□□□□□ -0.48
BRCA1-228ENST00000618469 CEBPZOSA8MTT3 80 aa12.05□□□□□ -0.48
BRCA1-228ENST00000618469 CORTO00230 105 aa12.05□□□□□ -0.48
BRCA1-228ENST00000618469 GNG7O60262 68 aa12.05□□□□□ -0.48
BRCA1-228ENST00000618469 CCR6P51684 374 aa12.05□□□□□ -0.48
BRCA1-228ENST00000618469 ELLP55199 621 aaPredicted RBP12.05□□□□□ -0.48
BRCA1-228ENST00000618469 RELQ04864 619 aaPredicted RBP12.05□□□□□ -0.48
BRCA1-228ENST00000618469 RBMS2Q15434 407 aaKnown RBP12.05□□□□□ -0.48
BRCA1-228ENST00000618469 TMEM128Q5BJH2 165 aa12.05□□□□□ -0.48
BRCA1-228ENST00000618469 NMSQ5H8A3 153 aa12.05□□□□□ -0.48
BRCA1-228ENST00000618469 LYZL2Q7Z4W2 148 aa12.05□□□□□ -0.48
BRCA1-228ENST00000618469 MARC2Q969Z3 335 aa12.05□□□□□ -0.48
BRCA1-228ENST00000618469 SDHCQ99643 169 aaPredicted RBP12.05□□□□□ -0.48
BRCA1-228ENST00000618469 HEYLQ9NQ87 328 aaPredicted RBP12.05□□□□□ -0.48
BRCA1-228ENST00000618469 STAB2Q8WWQ8 2551 aa12.05□□□□□ -0.48
BRCA1-228ENST00000618469 ZNF207O43670 478 aaKnown RBP12.04□□□□□ -0.48
BRCA1-228ENST00000618469 CTSGP08311 255 aa12.04□□□□□ -0.48
BRCA1-228ENST00000618469 FCGR2BP31994 310 aaPredicted RBP12.04□□□□□ -0.48
BRCA1-228ENST00000618469 OPRK1P41145 380 aa12.04□□□□□ -0.48
BRCA1-228ENST00000618469 SBSPONQ8IVN8 264 aa12.04□□□□□ -0.48
BRCA1-228ENST00000618469 CENPSQ8N2Z9 138 aa12.04□□□□□ -0.48
BRCA1-228ENST00000618469 TXN2Q99757 166 aa12.04□□□□□ -0.48
BRCA1-228ENST00000618469 MRPL27Q9P0M9 148 aaKnown RBP12.04□□□□□ -0.48
BRCA1-228ENST00000618469 HUWE1Q7Z6Z7 4374 aaKnown RBP12.03□□□□□ -0.48
BRCA1-228ENST00000618469 NAP1L6A6NFF2 107 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms