RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 MAGT1Q9H0U3 335 aa10.3□□□□□ -0.76
LINC00540-202ENST00000616974 RANGRFQ9HD47 186 aaPredicted RBP10.3□□□□□ -0.76
LINC00540-202ENST00000616974 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.3□□□□□ -0.76
LINC00540-202ENST00000616974 I3L2K1 104 aa10.29□□□□□ -0.76
LINC00540-202ENST00000616974 SULT1A3P0DMM9 295 aa10.29□□□□□ -0.76
LINC00540-202ENST00000616974 SULT1A4P0DMN0 295 aa10.29□□□□□ -0.76
LINC00540-202ENST00000616974 LRTM2Q8N967 370 aa10.29□□□□□ -0.76
LINC00540-202ENST00000616974 RCC1LQ96I51 464 aaKnown RBP10.29□□□□□ -0.76
LINC00540-202ENST00000616974 FAM240BA0A1B0GVZ2 78 aa10.28□□□□□ -0.76
LINC00540-202ENST00000616974 WI2-2373I1.2A0A1W2PRP0 233 aa10.28□□□□□ -0.76
LINC00540-202ENST00000616974 PITX3O75364 302 aa10.28□□□□□ -0.76
LINC00540-202ENST00000616974 ANXA3P12429 323 aa10.28□□□□□ -0.76
LINC00540-202ENST00000616974 KPRPQ5T749 579 aaPredicted RBP10.28□□□□□ -0.76
LINC00540-202ENST00000616974 OR1P1Q8NH06 330 aa10.28□□□□□ -0.76
LINC00540-202ENST00000616974 OR10C1Q96KK4 312 aa10.28□□□□□ -0.76
LINC00540-202ENST00000616974 SRSF8Q9BRL6 282 aaKnown RBP10.28□□□□□ -0.76
LINC00540-202ENST00000616974 RBKSQ9H477 322 aa10.28□□□□□ -0.76
LINC00540-202ENST00000616974 MT-CO2P00403 227 aa10.28□□□□□ -0.76
LINC00540-202ENST00000616974 IAPPP10997 89 aa10.28□□□□□ -0.76
LINC00540-202ENST00000616974 TNFRSF9Q07011 255 aa10.28□□□□□ -0.76
LINC00540-202ENST00000616974 SMCO1Q147U7 214 aa10.28□□□□□ -0.76
LINC00540-202ENST00000616974 BSXQ3C1V8 233 aa10.28□□□□□ -0.76
LINC00540-202ENST00000616974 AURKAIP1Q9NWT8 199 aaPredicted RBP10.28□□□□□ -0.76
LINC00540-202ENST00000616974 HUWE1Q7Z6Z7 4374 aaKnown RBP10.27□□□□□ -0.76
LINC00540-202ENST00000616974 CEBPZOSA8MTT3 80 aa10.27□□□□□ -0.77
LINC00540-202ENST00000616974 SAP30O75446 220 aa10.27□□□□□ -0.77
LINC00540-202ENST00000616974 ARL3P36405 182 aa10.27□□□□□ -0.77
LINC00540-202ENST00000616974 SPCS3P61009 180 aa10.27□□□□□ -0.77
LINC00540-202ENST00000616974 RPEL1Q2QD12 228 aa10.27□□□□□ -0.77
LINC00540-202ENST00000616974 ACSM6Q6P461 480 aa10.27□□□□□ -0.77
LINC00540-202ENST00000616974 ZNF114Q8NC26 417 aa10.27□□□□□ -0.77
LINC00540-202ENST00000616974 HSPB7Q9UBY9 170 aa10.27□□□□□ -0.77
LINC00540-202ENST00000616974 ATG12O94817 140 aa10.27□□□□□ -0.77
LINC00540-202ENST00000616974 DUS4LO95620 317 aaKnown RBP10.27□□□□□ -0.77
LINC00540-202ENST00000616974 H2AFB2P0C5Z0 115 aa10.27□□□□□ -0.77
LINC00540-202ENST00000616974 OR1S1Q8NH92 325 aa10.27□□□□□ -0.77
LINC00540-202ENST00000616974 PRR25Q96S07 402 aa10.27□□□□□ -0.77
LINC00540-202ENST00000616974 PDCD10Q9BUL8 212 aa10.27□□□□□ -0.77
LINC00540-202ENST00000616974 IZUMO1RA6ND01 250 aa10.26□□□□□ -0.77
LINC00540-202ENST00000616974 WIPF1O43516 503 aa10.26□□□□□ -0.77
LINC00540-202ENST00000616974 DHFRP00374 187 aa10.26□□□□□ -0.77
LINC00540-202ENST00000616974 PDLIM3Q53GG5 364 aaPredicted RBP10.26□□□□□ -0.77
LINC00540-202ENST00000616974 THOC7Q6I9Y2 204 aaKnown RBP10.26□□□□□ -0.77
LINC00540-202ENST00000616974 UXS1Q8NBZ7 420 aa10.26□□□□□ -0.77
LINC00540-202ENST00000616974 EEF1AKMT3Q96AZ1 226 aa10.26□□□□□ -0.77
LINC00540-202ENST00000616974 WDR89Q96FK6 387 aaPredicted RBP10.26□□□□□ -0.77
LINC00540-202ENST00000616974 HEYLQ9NQ87 328 aaPredicted RBP10.26□□□□□ -0.77
LINC00540-202ENST00000616974 C21orf62Q9NYP8 219 aa10.26□□□□□ -0.77
LINC00540-202ENST00000616974 TMEM50AO95807 157 aa10.25□□□□□ -0.77
LINC00540-202ENST00000616974 CTSGP08311 255 aa10.25□□□□□ -0.77
LINC00540-202ENST00000616974 HIST1H1BP16401 226 aaKnown RBP10.25□□□□□ -0.77
LINC00540-202ENST00000616974 ERHP84090 104 aaKnown RBP10.25□□□□□ -0.77
LINC00540-202ENST00000616974 HSD17B13Q7Z5P4 300 aaPredicted RBP10.25□□□□□ -0.77
LINC00540-202ENST00000616974 OR9G4Q8NGQ1 327 aa10.25□□□□□ -0.77
LINC00540-202ENST00000616974 OR52E5Q8NH55 327 aa10.25□□□□□ -0.77
LINC00540-202ENST00000616974 MITD1Q8WV92 249 aa10.25□□□□□ -0.77
LINC00540-202ENST00000616974 H3BP45 60 aa10.25□□□□□ -0.77
LINC00540-202ENST00000616974 K7EIL1 84 aa10.25□□□□□ -0.77
LINC00540-202ENST00000616974 ZNF207O43670 478 aaKnown RBP10.25□□□□□ -0.77
LINC00540-202ENST00000616974 CSN3P07498 182 aa10.25□□□□□ -0.77
LINC00540-202ENST00000616974 SNCAP37840 140 aa10.25□□□□□ -0.77
LINC00540-202ENST00000616974 SRPXP78539 464 aa10.25□□□□□ -0.77
LINC00540-202ENST00000616974 EGFEM1PQ0D2K5 195 aa10.25□□□□□ -0.77
LINC00540-202ENST00000616974 TM4SF20Q53R12 229 aa10.25□□□□□ -0.77
LINC00540-202ENST00000616974 PVRIGQ6DKI7 326 aa10.25□□□□□ -0.77
LINC00540-202ENST00000616974 DTD1Q8TEA8 209 aa10.25□□□□□ -0.77
LINC00540-202ENST00000616974 A0A1B0GU03 582 aa10.24□□□□□ -0.77
LINC00540-202ENST00000616974 INS-IGF2F8WCM5 200 aa10.24□□□□□ -0.77
LINC00540-202ENST00000616974 TGOLN2O43493 480 aa10.24□□□□□ -0.77
LINC00540-202ENST00000616974 ZP3P21754 424 aa10.24□□□□□ -0.77
LINC00540-202ENST00000616974 ENKURQ8TC29 256 aa10.24□□□□□ -0.77
LINC00540-202ENST00000616974 ZNF320A2RRD8 509 aa10.24□□□□□ -0.77
LINC00540-202ENST00000616974 POLR2GP62487 172 aaKnown RBP eCLIP10.24□□□□□ -0.77
LINC00540-202ENST00000616974 Q56UQ5 140 aa10.24□□□□□ -0.77
LINC00540-202ENST00000616974 SLC24A4Q8NFF2 622 aa10.24□□□□□ -0.77
LINC00540-202ENST00000616974 CXorf58Q96LI9 332 aa10.24□□□□□ -0.77
LINC00540-202ENST00000616974 TMED3Q9Y3Q3 217 aa10.24□□□□□ -0.77
LINC00540-202ENST00000616974 AGRNO00468 2067 aa10.23□□□□□ -0.77
LINC00540-202ENST00000616974 TRBV7-1A0A0A6YYK4 115 aa10.23□□□□□ -0.77
LINC00540-202ENST00000616974 TMEM213A2RRL7 107 aa10.23□□□□□ -0.77
LINC00540-202ENST00000616974 WRBO00258 174 aa10.23□□□□□ -0.77
LINC00540-202ENST00000616974 GGCTO75223 188 aaKnown RBP10.23□□□□□ -0.77
LINC00540-202ENST00000616974 CCNKO75909 580 aa10.23□□□□□ -0.77
LINC00540-202ENST00000616974 SIX6O95475 246 aa10.23□□□□□ -0.77
LINC00540-202ENST00000616974 MZT2BQ6NZ67 158 aa10.23□□□□□ -0.77
LINC00540-202ENST00000616974 PLET1Q6UQ28 207 aa10.23□□□□□ -0.77
LINC00540-202ENST00000616974 DUSP18Q8NEJ0 188 aa10.23□□□□□ -0.77
LINC00540-202ENST00000616974 OR4D5Q8NGN0 318 aa10.23□□□□□ -0.77
LINC00540-202ENST00000616974 VN1R17PQ8TDU5 208 aa10.23□□□□□ -0.77
LINC00540-202ENST00000616974 ZNF431Q8TF32 576 aaPredicted RBP10.23□□□□□ -0.77
LINC00540-202ENST00000616974 OR4C12Q96R67 309 aa10.23□□□□□ -0.77
LINC00540-202ENST00000616974 ENY2Q9NPA8 101 aa10.23□□□□□ -0.77
LINC00540-202ENST00000616974 IGHV3-49A0A0A0MS15 119 aa10.22□□□□□ -0.77
LINC00540-202ENST00000616974 DUXBA0A1W2PPF3 345 aa10.22□□□□□ -0.77
LINC00540-202ENST00000616974 C15orf62A8K5M9 175 aa10.22□□□□□ -0.77
LINC00540-202ENST00000616974 OPRK1P41145 380 aa10.22□□□□□ -0.77
LINC00540-202ENST00000616974 C9orf66Q5T8R8 295 aa10.22□□□□□ -0.77
LINC00540-202ENST00000616974 THYN1Q9P016 225 aa10.22□□□□□ -0.77
LINC00540-202ENST00000616974 IGHV3OR16-13A0A075B7E8 117 aa10.22□□□□□ -0.77
LINC00540-202ENST00000616974 IGHV3-74A0A0B4J1X5 117 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms