RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 P0DMU3 169 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 FAM231AP0DMU4 169 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 FAM231CP0DMU5 169 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 OR13C7P0DN81 318 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 MIFP14174 115 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 EDN2P20800 178 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 S100GP29377 79 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 FCGR2BP31994 310 aaPredicted RBP4.63□□□□□ -1.67
CUX1-220ENST00000607092 CBX5P45973 191 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 MFAP2P55001 183 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 RPL11P62913 178 aaKnown RBP4.63□□□□□ -1.67
CUX1-220ENST00000607092 IFITM3Q01628 133 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 EWSR1Q01844 656 aaKnown RBP eCLIP4.63□□□□□ -1.672e-6■■□□□ 13.5
CUX1-220ENST00000607092 Q56UQ5 140 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 SOHLH1Q5JUK2 328 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 SLC25A24Q6NUK1 477 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 MORN3Q6PF18 240 aaPredicted RBP4.63□□□□□ -1.67
CUX1-220ENST00000607092 CMTM1Q8IZ96 169 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 CLRN3Q8NCR9 226 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 DMBX1Q8NFW5 382 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 OR5B3Q8NH48 314 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 C15orf40Q8WUR7 153 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 MAFIPQ8WZ33 124 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 NARS2Q96I59 477 aaKnown RBP4.63□□□□□ -1.67
CUX1-220ENST00000607092 RHPN1-AS1Q9BWJ2 59 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 SRRQ9GZT4 340 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 DAPK2Q9UIK4 370 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 PRNDQ9UKY0 176 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 ETV7Q9Y603 341 aa4.63□□□□□ -1.67
CUX1-220ENST00000607092 F11RQ9Y624 299 aaKnown RBP4.63□□□□□ -1.67
CUX1-220ENST00000607092 DNAH6Q9C0G6 4158 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 TRAV14DV4A0A0A6YYC5 116 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 IGHV3-35A0A0C4DH35 117 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 A0A1B0GVG6 124 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 A0A1W2PS18 150 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 MARCH11A6NNE9 402 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 C15orf61A6NNL5 157 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 IGLL5B9A064 214 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 E7EUB6 86 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 DNASE2O00115 360 aaPredicted RBP4.62□□□□□ -1.67
CUX1-220ENST00000607092 PFDN1O60925 122 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 IGLV2-14P01704 120 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 REG1AP05451 166 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 SPP1P10451 314 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 NPBWR1P48145 328 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 EIF2B2P49770 351 aaKnown RBP4.62□□□□□ -1.67
CUX1-220ENST00000607092 MFAP4P55083 255 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 NANOS2P60321 138 aaKnown RBP4.62□□□□□ -1.67
CUX1-220ENST00000607092 PLA2G7Q13093 441 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 EIF4EBP1Q13541 118 aaPredicted RBP4.62□□□□□ -1.67
CUX1-220ENST00000607092 IDNKQ5T6J7 187 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 SFXN4Q6P4A7 337 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 C19orf35Q6ZS72 473 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 STHQ8IWL8 128 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 UBAC2Q8NBM4 344 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 TMEM116Q8NCL8 245 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 DUSP18Q8NEJ0 188 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 BEST4Q8NFU0 473 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 OR1P1Q8NH06 330 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 SECTM1Q8WVN6 248 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 OR10C1Q96KK4 312 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 SDHCQ99643 169 aaPredicted RBP4.62□□□□□ -1.67
CUX1-220ENST00000607092 RNF126Q9BV68 326 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 C1QTNF4Q9BXJ3 329 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 SLC5A7Q9GZV3 580 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 MIXL1Q9H2W2 232 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 TMEM140Q9NV12 185 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 COMMD3Q9UBI1 195 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 S4R3C0 116 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 VPS13DQ5THJ4 4388 aa4.62□□□□□ -1.67
CUX1-220ENST00000607092 IGKV1D-8A0A087WSZ0 117 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 IGKV1D-13A0A0B4J2D9 117 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 TEX48A0A1B0GUV7 120 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 A0A1B0GW64 132 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 ZNF561-AS1K7EIQ3 104 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 CHEK1O14757 476 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 CTDSPLO15194 276 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 PPYP01298 95 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 CTSGP08311 255 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 IGKV1-13P0DP09 117 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 RPA2P15927 270 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 F2RP25116 425 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 NPY1RP25929 384 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 FCGR2CP31995 323 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 BCAP31P51572 246 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 HERV-K104P61576 105 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 NUTF2P61970 127 aaKnown RBP4.61□□□□□ -1.67
CUX1-220ENST00000607092 ASAH1Q13510 395 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 ZNF79Q15937 498 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 AADACL3Q5VUY0 350 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 PVRIGQ6DKI7 326 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 MZT2BQ6NZ67 158 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 HOGA1Q86XE5 327 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 APRG1Q8IVJ8 170 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 SCARB1Q8WTV0 552 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 GIMAP1Q8WWP7 306 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 DEDD2Q8WXF8 326 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 FAM210BQ96KR6 192 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 RNF2Q99496 336 aa4.61□□□□□ -1.67
CUX1-220ENST00000607092 HINT2Q9BX68 163 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms