RNA–Protein interactions for RNA: ENST00000602029.1

VRK3-226, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-226ENST00000602029 S100A12P80511 92 aa4.03□□□□□ -1.76
VRK3-226ENST00000602029 PMS2P11Q13670 270 aa4.03□□□□□ -1.76
VRK3-226ENST00000602029 NMSQ5H8A3 153 aa4.03□□□□□ -1.76
VRK3-226ENST00000602029 FAM74A1Q5RGS3 127 aa4.03□□□□□ -1.76
VRK3-226ENST00000602029 TRAT1Q6PIZ9 186 aa4.03□□□□□ -1.76
VRK3-226ENST00000602029 PUSL1Q8N0Z8 303 aaKnown RBP4.03□□□□□ -1.76
VRK3-226ENST00000602029 ZNF491Q8N8L2 437 aa4.03□□□□□ -1.76
VRK3-226ENST00000602029 OR10A7Q8NGE5 316 aa4.03□□□□□ -1.76
VRK3-226ENST00000602029 OR10G4Q8NGN3 311 aa4.03□□□□□ -1.76
VRK3-226ENST00000602029 GLYATL2Q8WU03 294 aa4.03□□□□□ -1.76
VRK3-226ENST00000602029 IL1F10Q8WWZ1 152 aa4.03□□□□□ -1.76
VRK3-226ENST00000602029 DLX4Q92988 240 aaPredicted RBP4.03□□□□□ -1.76
VRK3-226ENST00000602029 FLYWCH2Q96CP2 140 aaKnown RBP4.03□□□□□ -1.76
VRK3-226ENST00000602029 RAB40CQ96S21 281 aa4.03□□□□□ -1.76
VRK3-226ENST00000602029 SPATA25Q9BR10 227 aa4.03□□□□□ -1.76
VRK3-226ENST00000602029 TCEAL7Q9BRU2 100 aa4.03□□□□□ -1.76
VRK3-226ENST00000602029 FAAP24Q9BTP7 215 aa4.03□□□□□ -1.76
VRK3-226ENST00000602029 OR2S2Q9NQN1 319 aa4.03□□□□□ -1.76
VRK3-226ENST00000602029 SMCO4Q9NRQ5 59 aa4.03□□□□□ -1.76
VRK3-226ENST00000602029 LYRM2Q9NU23 88 aaPredicted RBP4.03□□□□□ -1.76
VRK3-226ENST00000602029 GFOD1Q9NXC2 390 aa4.03□□□□□ -1.76
VRK3-226ENST00000602029 COA4Q9NYJ1 87 aa4.03□□□□□ -1.76
VRK3-226ENST00000602029 IGHV4OR15-8A0A075B7B6 117 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 IGKV1D-8A0A087WSZ0 117 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 A0A087WW49 117 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 A0A087WWC5 75 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 TRAV1-1A0A0B4J248 108 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 B4DEV8 164 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 SLC31A2O15432 143 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 TGOLN2O43493 480 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 SCO1O75880 301 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 CNIH1O95406 144 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 HBZP02008 142 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 LGALS1P09382 135 aaKnown RBP4.02□□□□□ -1.77
VRK3-226ENST00000602029 SFTA3P0C7M3 94 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 CNTFRP26992 372 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 PSMB8P28062 276 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 MAS1LP35410 378 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 HOXA1P49639 335 aaPredicted RBP4.02□□□□□ -1.77
VRK3-226ENST00000602029 RAB5BP61020 215 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 HLA-DRB3P79483 266 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 ID3Q02535 119 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 TMEM267Q0VDI3 215 aaPredicted RBP4.02□□□□□ -1.77
VRK3-226ENST00000602029 SMUG1Q53HV7 270 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 RPL7L1Q6DKI1 246 aaKnown RBP4.02□□□□□ -1.77
VRK3-226ENST00000602029 UNQ5815/PRO19632Q6UWF5 114 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 Q6ZRG5 221 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 SLC25A48Q6ZT89 311 aaKnown RBP4.02□□□□□ -1.77
VRK3-226ENST00000602029 STX12Q86Y82 276 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 FAM219AQ8IW50 185 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 OR2C3Q8N628 320 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 DMBX1Q8NFW5 382 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 OR52M1Q8NGK5 317 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 OR1L1Q8NH94 360 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 IL17DQ8TAD2 202 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 PCNPQ8WW12 178 aaKnown RBP4.02□□□□□ -1.77
VRK3-226ENST00000602029 FAM110AQ9BQ89 295 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 PSMG3Q9BT73 122 aaPredicted RBP4.02□□□□□ -1.77
VRK3-226ENST00000602029 ABHD14AQ9BUJ0 271 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 MRPL20Q9BYC9 149 aaKnown RBP4.02□□□□□ -1.77
VRK3-226ENST00000602029 TOLLIPQ9H0E2 274 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 C11orf1Q9H5F2 150 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 TREM1Q9NP99 234 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 BIN3Q9NQY0 253 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 GSKIPQ9P0R6 139 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 ZNF581Q9P0T4 197 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 MLXQ9UH92 298 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 FOXA2Q9Y261 457 aaPredicted RBP4.02□□□□□ -1.77
VRK3-226ENST00000602029 OR2W1Q9Y3N9 320 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 HERC1Q15751 4861 aa4.02□□□□□ -1.77
VRK3-226ENST00000602029 DYNC1H1Q14204 4646 aaKnown RBP4.02□□□□□ -1.77
VRK3-226ENST00000602029 DSCAML1Q8TD84 2053 aa4.01□□□□□ -1.77
VRK3-226ENST00000602029 CXorf65A6NEN9 183 aa4.01□□□□□ -1.77
VRK3-226ENST00000602029 C12orf77C9JDV5 145 aa4.01□□□□□ -1.77
VRK3-226ENST00000602029 HLA-DRB1P01911 266 aa4.01□□□□□ -1.77
VRK3-226ENST00000602029 MT-ND4LP03901 98 aa4.01□□□□□ -1.77
VRK3-226ENST00000602029 TRGV3P03979 118 aa4.01□□□□□ -1.77
VRK3-226ENST00000602029 HSPB1P04792 205 aaKnown RBP4.01□□□□□ -1.77
VRK3-226ENST00000602029 IGF1P05019 195 aa4.01□□□□□ -1.77
VRK3-226ENST00000602029 S100A8P05109 93 aa4.01□□□□□ -1.77
VRK3-226ENST00000602029 ADCYAP1P18509 176 aa4.01□□□□□ -1.77
VRK3-226ENST00000602029 PI3P19957 117 aa4.01□□□□□ -1.77
VRK3-226ENST00000602029 AADACP22760 399 aa4.01□□□□□ -1.77
VRK3-226ENST00000602029 F2RP25116 425 aa4.01□□□□□ -1.77
VRK3-226ENST00000602029 GNRHRP30968 328 aa4.01□□□□□ -1.77
VRK3-226ENST00000602029 PPP1CCP36873 323 aaKnown RBP4.01□□□□□ -1.77
VRK3-226ENST00000602029 LPAR6P43657 344 aa4.01□□□□□ -1.77
VRK3-226ENST00000602029 CAMLGP49069 296 aa4.01□□□□□ -1.77
VRK3-226ENST00000602029 VAMP2P63027 116 aa4.01□□□□□ -1.77
VRK3-226ENST00000602029 HBG1P69891 147 aa4.01□□□□□ -1.77
VRK3-226ENST00000602029 HBG2P69892 147 aa4.01□□□□□ -1.77
VRK3-226ENST00000602029 SERF2P84101 59 aa4.01□□□□□ -1.77
VRK3-226ENST00000602029 EWSR1Q01844 656 aaKnown RBP eCLIP4.01□□□□□ -1.77
VRK3-226ENST00000602029 PNRC1Q12796 327 aaPredicted RBP4.01□□□□□ -1.77
VRK3-226ENST00000602029 FHL3Q13643 280 aa4.01□□□□□ -1.77
VRK3-226ENST00000602029 EBI3Q14213 229 aa4.01□□□□□ -1.77
VRK3-226ENST00000602029 C5orf64Q2M2E5 130 aa4.01□□□□□ -1.77
VRK3-226ENST00000602029 TMEM30BQ3MIR4 351 aa4.01□□□□□ -1.77
VRK3-226ENST00000602029 TBC1D26Q86UD7 250 aa4.01□□□□□ -1.77
VRK3-226ENST00000602029 PPP1R27Q86WC6 154 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms