RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 VPS13DQ5THJ4 4388 aa7.04□□□□□ -1.28
VRK3-224ENST00000601849 IGHV3-49A0A0A0MS15 119 aa7.03□□□□□ -1.28
VRK3-224ENST00000601849 TRAV2A0A0B4J234 112 aa7.03□□□□□ -1.28
VRK3-224ENST00000601849 SMIM31A0A1B0GVY4 71 aa7.03□□□□□ -1.28
VRK3-224ENST00000601849 MEIS3P1A6NDR6 274 aa7.03□□□□□ -1.28
VRK3-224ENST00000601849 C15orf61A6NNL5 157 aa7.03□□□□□ -1.28
VRK3-224ENST00000601849 CORTO00230 105 aa7.03□□□□□ -1.28
VRK3-224ENST00000601849 ATG12O94817 140 aa7.03□□□□□ -1.28
VRK3-224ENST00000601849 MT-CO2P00403 227 aa7.03□□□□□ -1.28
VRK3-224ENST00000601849 PRSS3P35030 304 aa7.03□□□□□ -1.28
VRK3-224ENST00000601849 EIF2B2P49770 351 aaKnown RBP7.03□□□□□ -1.28
VRK3-224ENST00000601849 MFAP2P55001 183 aa7.03□□□□□ -1.28
VRK3-224ENST00000601849 MORN3Q6PF18 240 aaPredicted RBP7.03□□□□□ -1.28
VRK3-224ENST00000601849 SLC25A38Q96DW6 304 aa7.03□□□□□ -1.28
VRK3-224ENST00000601849 PDCD10Q9BUL8 212 aa7.03□□□□□ -1.28
VRK3-224ENST00000601849 HRH4Q9H3N8 390 aa7.03□□□□□ -1.28
VRK3-224ENST00000601849 TMEM14BQ9NUH8 114 aa7.03□□□□□ -1.28
VRK3-224ENST00000601849 F8W735 103 aaPredicted RBP7.02□□□□□ -1.29
VRK3-224ENST00000601849 I3L2K1 104 aa7.02□□□□□ -1.29
VRK3-224ENST00000601849 SPP1P10451 314 aa7.02□□□□□ -1.29
VRK3-224ENST00000601849 MIFP14174 115 aa7.02□□□□□ -1.29
VRK3-224ENST00000601849 NPPCP23582 126 aa7.02□□□□□ -1.29
VRK3-224ENST00000601849 DEFB131AP59861 70 aa7.02□□□□□ -1.29
VRK3-224ENST00000601849 HSPE1P61604 102 aaKnown RBP7.02□□□□□ -1.29
VRK3-224ENST00000601849 PRCDQ00LT1 54 aa7.02□□□□□ -1.29
VRK3-224ENST00000601849 ZNF124Q15973 351 aa7.02□□□□□ -1.29
VRK3-224ENST00000601849 UBE2NLQ5JXB2 153 aa7.02□□□□□ -1.29
VRK3-224ENST00000601849 FAM90A2PQ658T7 463 aa7.02□□□□□ -1.29
VRK3-224ENST00000601849 ZNF600Q6ZNG1 722 aa7.02□□□□□ -1.29
VRK3-224ENST00000601849 LINC00336Q6ZUF6 198 aa7.02□□□□□ -1.29
VRK3-224ENST00000601849 ZNF114Q8NC26 417 aa7.02□□□□□ -1.29
VRK3-224ENST00000601849 GRAMD2BQ96HH9 432 aa7.02□□□□□ -1.29
VRK3-224ENST00000601849 KRTAP17-1Q9BYP8 105 aa7.02□□□□□ -1.29
VRK3-224ENST00000601849 MS4A6AQ9H2W1 248 aa7.02□□□□□ -1.29
VRK3-224ENST00000601849 RABAC1Q9UI14 185 aa7.02□□□□□ -1.29
VRK3-224ENST00000601849 IGHV3OR16-13A0A075B7E8 117 aa7.01□□□□□ -1.29
VRK3-224ENST00000601849 IGHV3-74A0A0B4J1X5 117 aa7.01□□□□□ -1.29
VRK3-224ENST00000601849 DEFB4AO15263 64 aa7.01□□□□□ -1.29
VRK3-224ENST00000601849 IFNA17P01571 189 aa7.01□□□□□ -1.29
VRK3-224ENST00000601849 CLEC2LP0C7M8 214 aa7.01□□□□□ -1.29
VRK3-224ENST00000601849 PHLDA2Q53GA4 152 aa7.01□□□□□ -1.29
VRK3-224ENST00000601849 LEMD1Q68G75 181 aa7.01□□□□□ -1.29
VRK3-224ENST00000601849 TOMM20LQ6UXN7 152 aa7.01□□□□□ -1.29
VRK3-224ENST00000601849 TBC1D26Q86UD7 250 aa7.01□□□□□ -1.29
VRK3-224ENST00000601849 TMEM230Q96A57 120 aa7.01□□□□□ -1.29
VRK3-224ENST00000601849 METTL26Q96S19 204 aa7.01□□□□□ -1.29
VRK3-224ENST00000601849 ENY2Q9NPA8 101 aa7.01□□□□□ -1.29
VRK3-224ENST00000601849 PUS1Q9Y606 427 aaKnown RBP eCLIP7.01□□□□□ -1.29
VRK3-224ENST00000601849 TRAV30A0A087WSZ9 112 aa7□□□□□ -1.29
VRK3-224ENST00000601849 TRAV10A0A0B4J240 114 aa7□□□□□ -1.29
VRK3-224ENST00000601849 IGHV3-48P01763 117 aa7□□□□□ -1.29
VRK3-224ENST00000601849 NAT1P18440 290 aa7□□□□□ -1.29
VRK3-224ENST00000601849 NPY1RP25929 384 aa7□□□□□ -1.29
VRK3-224ENST00000601849 HLA-DMAP28067 261 aa7□□□□□ -1.29
VRK3-224ENST00000601849 HRH1P35367 487 aa7□□□□□ -1.29
VRK3-224ENST00000601849 AP2S1P53680 142 aaPredicted RBP7□□□□□ -1.29
VRK3-224ENST00000601849 TAS2R20P59543 309 aa7□□□□□ -1.29
VRK3-224ENST00000601849 NUTF2P61970 127 aaKnown RBP7□□□□□ -1.29
VRK3-224ENST00000601849 KCTD21Q4G0X4 260 aa7□□□□□ -1.29
VRK3-224ENST00000601849 SLC35G3Q8N808 338 aa7□□□□□ -1.29
VRK3-224ENST00000601849 SAMD12Q8N8I0 201 aa7□□□□□ -1.29
VRK3-224ENST00000601849 ST8SIA2Q92186 375 aa7□□□□□ -1.29
VRK3-224ENST00000601849 VSIRQ9H7M9 311 aa7□□□□□ -1.29
VRK3-224ENST00000601849 IGHV3-66A0A0C4DH42 116 aa6.99□□□□□ -1.29
VRK3-224ENST00000601849 DBX1A6NMT0 343 aa6.99□□□□□ -1.29
VRK3-224ENST00000601849 TMEM50AO95807 157 aa6.99□□□□□ -1.29
VRK3-224ENST00000601849 UCP3P55916 312 aa6.99□□□□□ -1.29
VRK3-224ENST00000601849 PVRIGQ6DKI7 326 aa6.99□□□□□ -1.29
VRK3-224ENST00000601849 STXBP6Q8NFX7 210 aa6.99□□□□□ -1.29
VRK3-224ENST00000601849 ZNF414Q96IQ9 312 aa6.99□□□□□ -1.29
VRK3-224ENST00000601849 SEC22AQ96IW7 307 aa6.99□□□□□ -1.29
VRK3-224ENST00000601849 C1QTNF4Q9BXJ3 329 aa6.99□□□□□ -1.29
VRK3-224ENST00000601849 RNF167Q9H6Y7 350 aa6.99□□□□□ -1.29
VRK3-224ENST00000601849 VCX3AQ9NNX9 186 aa6.99□□□□□ -1.29
VRK3-224ENST00000601849 APLNQ9ULZ1 77 aa6.99□□□□□ -1.29
VRK3-224ENST00000601849 PCLOQ9Y6V0 5065 aa6.98□□□□□ -1.29
VRK3-224ENST00000601849 RPS10-NUDT3A0A1W2PQS6 291 aa6.98□□□□□ -1.29
VRK3-224ENST00000601849 HELTA6NFD8 242 aa6.98□□□□□ -1.29
VRK3-224ENST00000601849 APOHP02749 345 aaPredicted RBP6.98□□□□□ -1.29
VRK3-224ENST00000601849 P0DMU3 169 aa6.98□□□□□ -1.29
VRK3-224ENST00000601849 FAM231AP0DMU4 169 aa6.98□□□□□ -1.29
VRK3-224ENST00000601849 FAM231CP0DMU5 169 aa6.98□□□□□ -1.29
VRK3-224ENST00000601849 PGAM2P15259 253 aa6.98□□□□□ -1.29
VRK3-224ENST00000601849 HLA-DMBP28068 263 aa6.98□□□□□ -1.29
VRK3-224ENST00000601849 OPRK1P41145 380 aa6.98□□□□□ -1.29
VRK3-224ENST00000601849 AKR1C2P52895 323 aa6.98□□□□□ -1.29
VRK3-224ENST00000601849 NEDD8Q15843 81 aa6.98□□□□□ -1.29
VRK3-224ENST00000601849 LYSMD2Q8IV50 215 aa6.98□□□□□ -1.29
VRK3-224ENST00000601849 RNASE11Q8TAA1 199 aaKnown RBP6.98□□□□□ -1.29
VRK3-224ENST00000601849 Q8WTZ3 238 aa6.98□□□□□ -1.29
VRK3-224ENST00000601849 MRGPRFQ96AM1 343 aa6.98□□□□□ -1.29
VRK3-224ENST00000601849 RRNAD1Q96FB5 475 aaKnown RBP6.98□□□□□ -1.29
VRK3-224ENST00000601849 ZNF486Q96H40 463 aaPredicted RBP6.98□□□□□ -1.29
VRK3-224ENST00000601849 FXYD6Q9H0Q3 95 aa6.98□□□□□ -1.29
VRK3-224ENST00000601849 SCPEP1Q9HB40 452 aa6.98□□□□□ -1.29
VRK3-224ENST00000601849 TBC1D24Q9ULP9 559 aa6.98□□□□□ -1.29
VRK3-224ENST00000601849 ANAPC10Q9UM13 185 aa6.98□□□□□ -1.29
VRK3-224ENST00000601849 IGHV4-4A0A075B6R2 117 aa6.97□□□□□ -1.29
VRK3-224ENST00000601849 IGHV4-28A0A0C4DH34 117 aa6.97□□□□□ -1.29
VRK3-224ENST00000601849 INS-IGF2F8WCM5 200 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms