RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 ZNF79Q15937 498 aa17.07■□□□□ 0.32
UPF1-207ENST00000599848 TMEM136Q6ZRR5 245 aa17.07■□□□□ 0.32
UPF1-207ENST00000599848 SIGLEC15Q6ZMC9 328 aa17.07■□□□□ 0.32
UPF1-207ENST00000599848 DMRTA2Q96SC8 542 aa17.07■□□□□ 0.32
UPF1-207ENST00000599848 Q9H3A6 140 aa17.07■□□□□ 0.32
UPF1-207ENST00000599848 FAM223BA6NKX1 122 aa17.07■□□□□ 0.32
UPF1-207ENST00000599848 K7ERU9 68 aa17.07■□□□□ 0.32
UPF1-207ENST00000599848 C3orf36Q3SXR2 165 aa17.07■□□□□ 0.32
UPF1-207ENST00000599848 FAM223AQ8IWN6 122 aa17.07■□□□□ 0.32
UPF1-207ENST00000599848 DEPPQ9NTK1 212 aa17.07■□□□□ 0.32
UPF1-207ENST00000599848 PPBPP02775 128 aa17.06■□□□□ 0.32
UPF1-207ENST00000599848 IGFBP2P18065 325 aa17.06■□□□□ 0.32
UPF1-207ENST00000599848 TPTE2P1Q5T6R2 138 aa17.06■□□□□ 0.32
UPF1-207ENST00000599848 PRO1933Q9H354 126 aa17.06■□□□□ 0.32
UPF1-207ENST00000599848 TNFSF13O75888 250 aa17.06■□□□□ 0.32
UPF1-207ENST00000599848 HEPN1Q6WQI6 88 aa17.06■□□□□ 0.32
UPF1-207ENST00000599848 OR1P1Q8NH06 330 aa17.06■□□□□ 0.32
UPF1-207ENST00000599848 SRIP30626 198 aa17.06■□□□□ 0.32
UPF1-207ENST00000599848 RBM38Q9H0Z9 239 aaKnown RBP17.06■□□□□ 0.32
UPF1-207ENST00000599848 CRIM1Q9NZV1 1036 aa17.06■□□□□ 0.32
UPF1-207ENST00000599848 CDK2AP2O75956 126 aa17.06■□□□□ 0.32
UPF1-207ENST00000599848 SRRM5B3KS81 715 aa17.06■□□□□ 0.32
UPF1-207ENST00000599848 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP17.06■□□□□ 0.32
UPF1-207ENST00000599848 PIN1P1O15428 100 aa17.06■□□□□ 0.32
UPF1-207ENST00000599848 RPLP1P05386 114 aaKnown RBP17.06■□□□□ 0.32
UPF1-207ENST00000599848 ADARB2-AS1A8MUL3 147 aa17.05■□□□□ 0.32
UPF1-207ENST00000599848 IGHV3-48P01763 117 aa17.05■□□□□ 0.32
UPF1-207ENST00000599848 PAM16Q9Y3D7 125 aa17.05■□□□□ 0.32
UPF1-207ENST00000599848 IGHV2-26A0A0B4J1V2 119 aa17.05■□□□□ 0.32
UPF1-207ENST00000599848 H3BUX3 64 aa17.05■□□□□ 0.32
UPF1-207ENST00000599848 GCM2O75603 506 aaPredicted RBP17.05■□□□□ 0.32
UPF1-207ENST00000599848 Q5PR19 223 aa17.05■□□□□ 0.32
UPF1-207ENST00000599848 RPUSD1Q9UJJ7 312 aaKnown RBP17.05■□□□□ 0.32
UPF1-207ENST00000599848 TMEM178BH3BS89 294 aa17.05■□□□□ 0.32
UPF1-207ENST00000599848 DANCRP0C864 163 aa17.05■□□□□ 0.32
UPF1-207ENST00000599848 COL5A1-AS1Q5SY13 56 aa17.05■□□□□ 0.32
UPF1-207ENST00000599848 ORMDL3Q8N138 153 aa17.05■□□□□ 0.32
UPF1-207ENST00000599848 RPL36AP83881 106 aaKnown RBP17.05■□□□□ 0.32
UPF1-207ENST00000599848 LINC00114Q6XXX2 140 aa17.05■□□□□ 0.32
UPF1-207ENST00000599848 ZNF497Q6ZNH5 498 aa17.05■□□□□ 0.32
UPF1-207ENST00000599848 PHLDA1Q8WV24 401 aaPredicted RBP17.05■□□□□ 0.32
UPF1-207ENST00000599848 RPL36ALQ969Q0 106 aaKnown RBP17.05■□□□□ 0.32
UPF1-207ENST00000599848 PARLQ9H300 379 aa17.05■□□□□ 0.32
UPF1-207ENST00000599848 ZNF25P17030 456 aaPredicted RBP17.04■□□□□ 0.32
UPF1-207ENST00000599848 CEACAM8P31997 349 aaPredicted RBP17.04■□□□□ 0.32
UPF1-207ENST00000599848 C17orf82Q86X59 251 aaPredicted RBP17.04■□□□□ 0.32
UPF1-207ENST00000599848 S4R3C0 116 aa17.04■□□□□ 0.32
UPF1-207ENST00000599848 A0A087X0M5 115 aa17.04■□□□□ 0.32
UPF1-207ENST00000599848 A0A1B0GX30 115 aa17.04■□□□□ 0.32
UPF1-207ENST00000599848 IGHG3P01860 377 aa17.04■□□□□ 0.32
UPF1-207ENST00000599848 CRYGSP22914 178 aa17.04■□□□□ 0.32
UPF1-207ENST00000599848 ATAD5Q96QE3 1844 aa17.04■□□□□ 0.32
UPF1-207ENST00000599848 MYO16Q9Y6X6 1858 aa17.04■□□□□ 0.32
UPF1-207ENST00000599848 C11orf91Q3C1V1 193 aa17.04■□□□□ 0.32
UPF1-207ENST00000599848 NCMAPQ5T1S8 102 aa17.04■□□□□ 0.32
UPF1-207ENST00000599848 C9orf139Q6ZV77 190 aa17.04■□□□□ 0.32
UPF1-207ENST00000599848 TTC9CQ8N5M4 171 aa17.04■□□□□ 0.32
UPF1-207ENST00000599848 RARRES2Q99969 163 aa17.04■□□□□ 0.32
UPF1-207ENST00000599848 UQCR10Q9UDW1 63 aa17.04■□□□□ 0.32
UPF1-207ENST00000599848 SLC25A15Q9Y619 301 aa17.04■□□□□ 0.32
UPF1-207ENST00000599848 LRRC37AA6NMS7 1700 aa17.03■□□□□ 0.32
UPF1-207ENST00000599848 TGIF2-C20orf24A0A0A6YYL0 155 aa17.03■□□□□ 0.32
UPF1-207ENST00000599848 RGP1Q92546 391 aaPredicted RBP17.03■□□□□ 0.32
UPF1-207ENST00000599848 F2Z2F3 143 aa17.03■□□□□ 0.32
UPF1-207ENST00000599848 SEC11AP67812 179 aa17.03■□□□□ 0.32
UPF1-207ENST00000599848 ASCL4Q6XD76 172 aa17.03■□□□□ 0.32
UPF1-207ENST00000599848 C11orf44Q8N8P7 122 aa17.03■□□□□ 0.32
UPF1-207ENST00000599848 FBLN5Q9UBX5 448 aa17.03■□□□□ 0.32
UPF1-207ENST00000599848 FOCADQ5VW36 1801 aa17.03■□□□□ 0.32
UPF1-207ENST00000599848 MDS2Q8NDY4 140 aa17.03■□□□□ 0.32
UPF1-207ENST00000599848 KLHL30-AS1Q8NEE0 82 aa17.03■□□□□ 0.32
UPF1-207ENST00000599848 INSP01308 110 aa17.02■□□□□ 0.32
UPF1-207ENST00000599848 ORMDL2Q53FV1 153 aa17.02■□□□□ 0.32
UPF1-207ENST00000599848 A0A0G2JNJ9 132 aa17.02■□□□□ 0.32
UPF1-207ENST00000599848 CCL1P22362 96 aa17.02■□□□□ 0.32
UPF1-207ENST00000599848 LCN12Q6JVE5 192 aa17.02■□□□□ 0.32
UPF1-207ENST00000599848 Q9UFV3 132 aa17.02■□□□□ 0.32
UPF1-207ENST00000599848 IGHV1-8P0DP01 117 aa17.02■□□□□ 0.32
UPF1-207ENST00000599848 FAM71F2Q6NXP2 309 aa17.02■□□□□ 0.32
UPF1-207ENST00000599848 GAGE10A6NGK3 116 aa17.02■□□□□ 0.31
UPF1-207ENST00000599848 TMEM50AO95807 157 aa17.02■□□□□ 0.31
UPF1-207ENST00000599848 SRSF7Q16629 238 aaKnown RBP eCLIP17.02■□□□□ 0.31
UPF1-207ENST00000599848 PIP4P2Q8N4L2 257 aa17.02■□□□□ 0.31
UPF1-207ENST00000599848 CYSLTR1Q9Y271 337 aa17.02■□□□□ 0.31
UPF1-207ENST00000599848 ZDBF2Q9HCK1 2354 aa17.01■□□□□ 0.31
UPF1-207ENST00000599848 HOXA3O43365 443 aaPredicted RBP17.01■□□□□ 0.31
UPF1-207ENST00000599848 MSMBP08118 114 aa17.01■□□□□ 0.31
UPF1-207ENST00000599848 LINC01559Q495D7 138 aa17.01■□□□□ 0.31
UPF1-207ENST00000599848 LYNX1G3V0Z9 82 aa17.01■□□□□ 0.31
UPF1-207ENST00000599848 TGFBR3LH3BV60 316 aa17.01■□□□□ 0.31
UPF1-207ENST00000599848 LYNX1P0DP58 116 aa17.01■□□□□ 0.31
UPF1-207ENST00000599848 BEND2Q8NDZ0 799 aa17.01■□□□□ 0.31
UPF1-207ENST00000599848 PLPPR1Q8TBJ4 325 aa17■□□□□ 0.31
UPF1-207ENST00000599848 APOMO95445 188 aa17■□□□□ 0.31
UPF1-207ENST00000599848 ZNF506Q5JVG8 444 aa17■□□□□ 0.31
UPF1-207ENST00000599848 MORN3Q6PF18 240 aaPredicted RBP17■□□□□ 0.31
UPF1-207ENST00000599848 TMEM160Q9NX00 188 aa17■□□□□ 0.31
UPF1-207ENST00000599848 INTS1Q8N201 2190 aaKnown RBP17■□□□□ 0.31
UPF1-207ENST00000599848 SPATA45Q537H7 98 aa17■□□□□ 0.31
UPF1-207ENST00000599848 ADAMTSL1Q8N6G6 1762 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms