RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 IFITM2Q01629 132 aa7.85□□□□□ -1.15
LIG1-213ENST00000596672 IZUMO4Q1ZYL8 232 aa7.85□□□□□ -1.15
LIG1-213ENST00000596672 AADACL3Q5VUY0 350 aa7.85□□□□□ -1.15
LIG1-213ENST00000596672 SLC25A42Q86VD7 318 aa7.85□□□□□ -1.15
LIG1-213ENST00000596672 LHFPL1Q86WI0 220 aa7.85□□□□□ -1.15
LIG1-213ENST00000596672 OR52B4Q8NGK2 314 aa7.85□□□□□ -1.15
LIG1-213ENST00000596672 OR4A5Q8NH83 315 aa7.85□□□□□ -1.15
LIG1-213ENST00000596672 CHRDL1Q9BU40 450 aa7.85□□□□□ -1.15
LIG1-213ENST00000596672 MED28Q9H204 178 aa7.85□□□□□ -1.15
LIG1-213ENST00000596672 HIPK2Q9H2X6 1198 aa7.85□□□□□ -1.15
LIG1-213ENST00000596672 NDUFA4L2Q9NRX3 87 aa7.85□□□□□ -1.15
LIG1-213ENST00000596672 DNAH10Q8IVF4 4471 aa7.85□□□□□ -1.15
LIG1-213ENST00000596672 MARCH11A6NNE9 402 aa7.84□□□□□ -1.15
LIG1-213ENST00000596672 A8MWP6 167 aa7.84□□□□□ -1.15
LIG1-213ENST00000596672 K7EIM0 57 aa7.84□□□□□ -1.15
LIG1-213ENST00000596672 SSNA1O43805 119 aa7.84□□□□□ -1.15
LIG1-213ENST00000596672 CREBL2O60519 120 aaPredicted RBP7.84□□□□□ -1.15
LIG1-213ENST00000596672 PRAF2O60831 178 aa7.84□□□□□ -1.15
LIG1-213ENST00000596672 SNAPC5O75971 98 aa7.84□□□□□ -1.15
LIG1-213ENST00000596672 KRASP01116 189 aa7.84□□□□□ -1.15
LIG1-213ENST00000596672 C8orf88P0DMB2 117 aa7.84□□□□□ -1.15
LIG1-213ENST00000596672 OR13C7P0DN81 318 aa7.84□□□□□ -1.15
LIG1-213ENST00000596672 AKR1C4P17516 323 aa7.84□□□□□ -1.15
LIG1-213ENST00000596672 PI3P19957 117 aa7.84□□□□□ -1.15
LIG1-213ENST00000596672 GPR183P32249 361 aa7.84□□□□□ -1.15
LIG1-213ENST00000596672 CD81P60033 236 aa7.84□□□□□ -1.15
LIG1-213ENST00000596672 C4orf46Q504U0 113 aa7.84□□□□□ -1.15
LIG1-213ENST00000596672 PHLDA2Q53GA4 152 aa7.84□□□□□ -1.15
LIG1-213ENST00000596672 LCN12Q6JVE5 192 aa7.84□□□□□ -1.15
LIG1-213ENST00000596672 SGPP2Q8IWX5 399 aa7.84□□□□□ -1.15
LIG1-213ENST00000596672 UXS1Q8NBZ7 420 aa7.84□□□□□ -1.15
LIG1-213ENST00000596672 GPN1Q9HCN4 374 aaPredicted RBP7.84□□□□□ -1.15
LIG1-213ENST00000596672 GPR132Q9UNW8 380 aa7.84□□□□□ -1.15
LIG1-213ENST00000596672 VPS13DQ5THJ4 4388 aa7.84□□□□□ -1.15
LIG1-213ENST00000596672 IGHV3OR16-8A0A075B7F1 116 aa7.83□□□□□ -1.16
LIG1-213ENST00000596672 C1QBP02746 253 aa7.83□□□□□ -1.16
LIG1-213ENST00000596672 SERPINE2P07093 398 aa7.83□□□□□ -1.16
LIG1-213ENST00000596672 OR4E1P0C645 316 aa7.83□□□□□ -1.16
LIG1-213ENST00000596672 HERV-K104P61576 105 aa7.83□□□□□ -1.16
LIG1-213ENST00000596672 RRAS2P62070 204 aaPredicted RBP7.83□□□□□ -1.16
LIG1-213ENST00000596672 FCN2Q15485 313 aa7.83□□□□□ -1.16
LIG1-213ENST00000596672 OR2K2Q8NGT1 345 aa7.83□□□□□ -1.16
LIG1-213ENST00000596672 EEF1AKMT3Q96AZ1 226 aa7.83□□□□□ -1.16
LIG1-213ENST00000596672 SEC22AQ96IW7 307 aa7.83□□□□□ -1.16
LIG1-213ENST00000596672 SCGB3A2Q96PL1 93 aa7.83□□□□□ -1.16
LIG1-213ENST00000596672 RTBDNQ9BSG5 229 aaPredicted RBP7.83□□□□□ -1.16
LIG1-213ENST00000596672 QTRT1Q9BXR0 403 aaKnown RBP7.83□□□□□ -1.16
LIG1-213ENST00000596672 ZNF436Q9C0F3 470 aaPredicted RBP7.83□□□□□ -1.16
LIG1-213ENST00000596672 ZMAT4Q9H898 229 aa7.83□□□□□ -1.16
LIG1-213ENST00000596672 COMMD9Q9P000 198 aa7.83□□□□□ -1.16
LIG1-213ENST00000596672 PEMTQ9UBM1 199 aa7.83□□□□□ -1.16
LIG1-213ENST00000596672 AGRNO00468 2067 aa7.83□□□□□ -1.16
LIG1-213ENST00000596672 ZNF320A2RRD8 509 aa7.82□□□□□ -1.16
LIG1-213ENST00000596672 SNRPGP15A8MWD9 76 aa7.82□□□□□ -1.16
LIG1-213ENST00000596672 OR11H12B2RN74 326 aa7.82□□□□□ -1.16
LIG1-213ENST00000596672 GPR31O00270 319 aa7.82□□□□□ -1.16
LIG1-213ENST00000596672 SCAF4O95104 1147 aaKnown RBP7.82□□□□□ -1.16
LIG1-213ENST00000596672 P0C879 139 aa7.82□□□□□ -1.16
LIG1-213ENST00000596672 LYL1P12980 280 aa7.82□□□□□ -1.16
LIG1-213ENST00000596672 NKX2-5P52952 324 aaPredicted RBP7.82□□□□□ -1.16
LIG1-213ENST00000596672 UBE2MP61081 183 aaKnown RBP7.82□□□□□ -1.16
LIG1-213ENST00000596672 CATR1Q13166 79 aa7.82□□□□□ -1.16
LIG1-213ENST00000596672 PPP1R1AQ13522 171 aa7.82□□□□□ -1.16
LIG1-213ENST00000596672 GUCA2BQ16661 112 aa7.82□□□□□ -1.16
LIG1-213ENST00000596672 THOC7Q6I9Y2 204 aaKnown RBP7.82□□□□□ -1.16
LIG1-213ENST00000596672 BTNL8Q6UX41 500 aa7.82□□□□□ -1.16
LIG1-213ENST00000596672 ZNF767PQ75MW2 155 aa7.82□□□□□ -1.16
LIG1-213ENST00000596672 TBC1D26Q86UD7 250 aa7.82□□□□□ -1.16
LIG1-213ENST00000596672 DMBX1Q8NFW5 382 aa7.82□□□□□ -1.16
LIG1-213ENST00000596672 ZFAND1Q8TCF1 268 aa7.82□□□□□ -1.16
LIG1-213ENST00000596672 ZNF431Q8TF32 576 aaPredicted RBP7.82□□□□□ -1.16
LIG1-213ENST00000596672 SCARB1Q8WTV0 552 aa7.82□□□□□ -1.16
LIG1-213ENST00000596672 SPATA25Q9BR10 227 aa7.82□□□□□ -1.16
LIG1-213ENST00000596672 COMMD5Q9GZQ3 224 aa7.82□□□□□ -1.16
LIG1-213ENST00000596672 C5orf66Q9H5L9 145 aa7.82□□□□□ -1.16
LIG1-213ENST00000596672 SRD5A3Q9H8P0 318 aa7.82□□□□□ -1.16
LIG1-213ENST00000596672 TMEM14BQ9NUH8 114 aa7.82□□□□□ -1.16
LIG1-213ENST00000596672 C14orf166Q9Y224 244 aaKnown RBP7.82□□□□□ -1.16
LIG1-213ENST00000596672 KMT2AQ03164 3969 aa7.82□□□□□ -1.16
LIG1-213ENST00000596672 A0A0G2JRQ6 117 aa7.81□□□□□ -1.16
LIG1-213ENST00000596672 C9orf170A2RU37 121 aa7.81□□□□□ -1.16
LIG1-213ENST00000596672 OR2T8A6NH00 312 aa7.81□□□□□ -1.16
LIG1-213ENST00000596672 TGOLN2O43493 480 aa7.81□□□□□ -1.16
LIG1-213ENST00000596672 IGKV1-5P01602 117 aa7.81□□□□□ -1.16
LIG1-213ENST00000596672 IGHV3-48P01763 117 aa7.81□□□□□ -1.16
LIG1-213ENST00000596672 CTSDP07339 412 aaPredicted RBP7.81□□□□□ -1.16
LIG1-213ENST00000596672 FGF2P09038 288 aa7.81□□□□□ -1.16
LIG1-213ENST00000596672 DEFA4P12838 97 aa7.81□□□□□ -1.16
LIG1-213ENST00000596672 HIST1H1BP16401 226 aaKnown RBP7.81□□□□□ -1.16
LIG1-213ENST00000596672 VAMP1P23763 118 aa7.81□□□□□ -1.16
LIG1-213ENST00000596672 EWSR1Q01844 656 aaKnown RBP eCLIP7.81□□□□□ -1.16
LIG1-213ENST00000596672 DHRS2Q13268 280 aa7.81□□□□□ -1.16
LIG1-213ENST00000596672 SURF2Q15527 256 aaPredicted RBP7.81□□□□□ -1.16
LIG1-213ENST00000596672 FAM209BQ5JX69 171 aa7.81□□□□□ -1.16
LIG1-213ENST00000596672 LYG2Q86SG7 212 aa7.81□□□□□ -1.16
LIG1-213ENST00000596672 SLC7A5P1Q8MH63 180 aa7.81□□□□□ -1.16
LIG1-213ENST00000596672 C12orf45Q8N5I9 185 aaPredicted RBP7.81□□□□□ -1.16
LIG1-213ENST00000596672 OR11H7Q8NGC8 314 aa7.81□□□□□ -1.16
LIG1-213ENST00000596672 OR1L8Q8NGR8 309 aa7.81□□□□□ -1.16
LIG1-213ENST00000596672 CD300LFQ8TDQ1 290 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms