RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 F8W735 103 aaPredicted RBP11.48□□□□□ -0.57
TRIM28-203ENST00000593582 C3orf84H3BNL1 204 aa11.48□□□□□ -0.57
TRIM28-203ENST00000593582 I3L2K1 104 aa11.48□□□□□ -0.57
TRIM28-203ENST00000593582 NUPL2O15504 423 aaKnown RBP11.48□□□□□ -0.57
TRIM28-203ENST00000593582 ST8SIA3O43173 380 aa11.48□□□□□ -0.57
TRIM28-203ENST00000593582 SCAF4O95104 1147 aaKnown RBP11.48□□□□□ -0.57
TRIM28-203ENST00000593582 OR5AC1P0C628 307 aa11.48□□□□□ -0.57
TRIM28-203ENST00000593582 MFAP4P55083 255 aa11.48□□□□□ -0.57
TRIM28-203ENST00000593582 RELQ04864 619 aaPredicted RBP11.48□□□□□ -0.57
TRIM28-203ENST00000593582 SPINK9Q5DT21 86 aa11.48□□□□□ -0.57
TRIM28-203ENST00000593582 DEFB125Q8N687 156 aa11.48□□□□□ -0.57
TRIM28-203ENST00000593582 OR51S1Q8NGJ8 323 aa11.48□□□□□ -0.57
TRIM28-203ENST00000593582 OR52B4Q8NGK2 314 aa11.48□□□□□ -0.57
TRIM28-203ENST00000593582 PINX1Q96BK5 328 aaKnown RBP11.48□□□□□ -0.57
TRIM28-203ENST00000593582 TXN2Q99757 166 aa11.48□□□□□ -0.57
TRIM28-203ENST00000593582 RTBDNQ9BSG5 229 aaPredicted RBP11.48□□□□□ -0.57
TRIM28-203ENST00000593582 C20orf24Q9BUV8 137 aa11.48□□□□□ -0.57
TRIM28-203ENST00000593582 NXF2Q9GZY0 626 aaKnown RBP11.48□□□□□ -0.57
TRIM28-203ENST00000593582 C5orf66Q9H5L9 145 aa11.48□□□□□ -0.57
TRIM28-203ENST00000593582 NAA60Q9H7X0 242 aa11.48□□□□□ -0.57
TRIM28-203ENST00000593582 CEPT1Q9Y6K0 416 aa11.48□□□□□ -0.57
TRIM28-203ENST00000593582 INS-IGF2F8WCM5 200 aa11.47□□□□□ -0.57
TRIM28-203ENST00000593582 CDS2O95674 445 aa11.47□□□□□ -0.57
TRIM28-203ENST00000593582 MT-CO2P00403 227 aa11.47□□□□□ -0.57
TRIM28-203ENST00000593582 CTSGP08311 255 aa11.47□□□□□ -0.57
TRIM28-203ENST00000593582 FCGR2BP31994 310 aaPredicted RBP11.47□□□□□ -0.57
TRIM28-203ENST00000593582 ADMP35318 185 aa11.47□□□□□ -0.57
TRIM28-203ENST00000593582 SUB1P53999 127 aaKnown RBP eCLIP11.47□□□□□ -0.577e-7■■■□□ 16.3
TRIM28-203ENST00000593582 FAM219AQ8IW50 185 aa11.47□□□□□ -0.57
TRIM28-203ENST00000593582 SOSTQ9BQB4 213 aa11.47□□□□□ -0.57
TRIM28-203ENST00000593582 ENY2Q9NPA8 101 aa11.47□□□□□ -0.57
TRIM28-203ENST00000593582 MCUBQ9NWR8 336 aa11.47□□□□□ -0.57
TRIM28-203ENST00000593582 SCP2D1Q9UJQ7 156 aa11.47□□□□□ -0.57
TRIM28-203ENST00000593582 GPR132Q9UNW8 380 aa11.47□□□□□ -0.57
TRIM28-203ENST00000593582 NBEAL2Q6ZNJ1 2754 aa11.46□□□□□ -0.57
TRIM28-203ENST00000593582 C15orf62A8K5M9 175 aa11.46□□□□□ -0.57
TRIM28-203ENST00000593582 K7EMT4 169 aa11.46□□□□□ -0.57
TRIM28-203ENST00000593582 ETV6P41212 452 aa11.46□□□□□ -0.57
TRIM28-203ENST00000593582 HOXA1P49639 335 aaPredicted RBP11.46□□□□□ -0.57
TRIM28-203ENST00000593582 DHODHQ02127 395 aa11.46□□□□□ -0.57
TRIM28-203ENST00000593582 LAMTOR1Q6IAA8 161 aa11.46□□□□□ -0.57
TRIM28-203ENST00000593582 MUC7Q8TAX7 377 aa11.46□□□□□ -0.57
TRIM28-203ENST00000593582 GLYATL2Q8WU03 294 aa11.46□□□□□ -0.57
TRIM28-203ENST00000593582 RBPMSQ93062 196 aaKnown RBP11.46□□□□□ -0.57
TRIM28-203ENST00000593582 SCGB3A2Q96PL1 93 aa11.46□□□□□ -0.57
TRIM28-203ENST00000593582 CITED4Q96RK1 184 aa11.46□□□□□ -0.57
TRIM28-203ENST00000593582 WFDC10AQ9H1F0 79 aa11.46□□□□□ -0.57
TRIM28-203ENST00000593582 SRD5A3Q9H8P0 318 aa11.46□□□□□ -0.57
TRIM28-203ENST00000593582 IGHV3OR16-8A0A075B7F1 116 aa11.45□□□□□ -0.58
TRIM28-203ENST00000593582 A0A0G2JRQ6 117 aa11.45□□□□□ -0.58
TRIM28-203ENST00000593582 CRYM-AS1A6NIL9 109 aa11.45□□□□□ -0.58
TRIM28-203ENST00000593582 GNG7O60262 68 aa11.45□□□□□ -0.58
TRIM28-203ENST00000593582 YIF1AO95070 293 aa11.45□□□□□ -0.58
TRIM28-203ENST00000593582 IGHV3-48P01763 117 aa11.45□□□□□ -0.58
TRIM28-203ENST00000593582 LINC00322Q6ZN03 302 aaPredicted RBP11.45□□□□□ -0.58
TRIM28-203ENST00000593582 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.45□□□□□ -0.58
TRIM28-203ENST00000593582 DNAH7Q8WXX0 4024 aa11.44□□□□□ -0.58
TRIM28-203ENST00000593582 RBMY1BA6NDE4 496 aaKnown RBP11.44□□□□□ -0.58
TRIM28-203ENST00000593582 RBMY1EA6NEQ0 496 aaKnown RBP11.44□□□□□ -0.58
TRIM28-203ENST00000593582 CORTO00230 105 aa11.44□□□□□ -0.58
TRIM28-203ENST00000593582 ZNF207O43670 478 aaKnown RBP11.44□□□□□ -0.58
TRIM28-203ENST00000593582 RBMY1DP0C7P1 496 aaKnown RBP11.44□□□□□ -0.58
TRIM28-203ENST00000593582 S100A5P33763 92 aa11.44□□□□□ -0.58
TRIM28-203ENST00000593582 NPBWR1P48145 328 aa11.44□□□□□ -0.58
TRIM28-203ENST00000593582 TMEM268Q5VZI3 342 aa11.44□□□□□ -0.58
TRIM28-203ENST00000593582 Q6ZRM9 215 aa11.44□□□□□ -0.58
TRIM28-203ENST00000593582 SELENOHQ8IZQ5 122 aaKnown RBP11.44□□□□□ -0.58
TRIM28-203ENST00000593582 DUSP18Q8NEJ0 188 aa11.44□□□□□ -0.58
TRIM28-203ENST00000593582 LHFPL5Q8TAF8 219 aa11.44□□□□□ -0.58
TRIM28-203ENST00000593582 SPAG8Q99932 426 aaPredicted RBP11.44□□□□□ -0.58
TRIM28-203ENST00000593582 KCNIP3Q9Y2W7 256 aa11.44□□□□□ -0.58
TRIM28-203ENST00000593582 TSPAN4O14817 238 aa11.43□□□□□ -0.58
TRIM28-203ENST00000593582 FAUP35544 74 aaKnown RBP11.43□□□□□ -0.58
TRIM28-203ENST00000593582 AP3S2P59780 193 aa11.43□□□□□ -0.58
TRIM28-203ENST00000593582 SPCS3P61009 180 aa11.43□□□□□ -0.58
TRIM28-203ENST00000593582 AARDQ4LEZ3 155 aa11.43□□□□□ -0.58
TRIM28-203ENST00000593582 PYDC2Q56P42 97 aa11.43□□□□□ -0.58
TRIM28-203ENST00000593582 OR52E5Q8NH55 327 aa11.43□□□□□ -0.58
TRIM28-203ENST00000593582 HIPK2Q9H2X6 1198 aa11.43□□□□□ -0.58
TRIM28-203ENST00000593582 TMEM56-RWDD3S4R434 201 aa11.43□□□□□ -0.58
TRIM28-203ENST00000593582 RNASE2P10153 161 aaKnown RBP11.42□□□□□ -0.58
TRIM28-203ENST00000593582 LYL1P12980 280 aa11.42□□□□□ -0.58
TRIM28-203ENST00000593582 PVRIGQ6DKI7 326 aa11.42□□□□□ -0.58
TRIM28-203ENST00000593582 TMEM116Q8NCL8 245 aa11.42□□□□□ -0.58
TRIM28-203ENST00000593582 GALNT14Q96FL9 552 aa11.42□□□□□ -0.58
TRIM28-203ENST00000593582 OR10C1Q96KK4 312 aa11.42□□□□□ -0.58
TRIM28-203ENST00000593582 CACNG5Q9UF02 275 aa11.42□□□□□ -0.58
TRIM28-203ENST00000593582 CACFD1Q9UGQ2 172 aa11.42□□□□□ -0.58
TRIM28-203ENST00000593582 SMPXQ9UHP9 88 aa11.42□□□□□ -0.58
TRIM28-203ENST00000593582 TRAV14DV4A0A0A6YYC5 116 aa11.41□□□□□ -0.58
TRIM28-203ENST00000593582 IGHV7-4-1A0A0J9YVY3 117 aa11.41□□□□□ -0.58
TRIM28-203ENST00000593582 AKR1C4P17516 323 aa11.41□□□□□ -0.58
TRIM28-203ENST00000593582 OPRK1P41145 380 aa11.41□□□□□ -0.58
TRIM28-203ENST00000593582 CASC10Q5T4H9 136 aa11.41□□□□□ -0.58
TRIM28-203ENST00000593582 TOMM5Q8N4H5 51 aa11.41□□□□□ -0.58
TRIM28-203ENST00000593582 IL22RA2Q969J5 263 aa11.41□□□□□ -0.58
TRIM28-203ENST00000593582 TMEM230Q96A57 120 aa11.41□□□□□ -0.58
TRIM28-203ENST00000593582 GPR146Q96CH1 333 aa11.41□□□□□ -0.58
TRIM28-203ENST00000593582 GINS3Q9BRX5 216 aa11.41□□□□□ -0.58
TRIM28-203ENST00000593582 EDA2RQ9HAV5 297 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms