RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 RBPMS2Q6ZRY4 209 aaKnown RBP7.93□□□□□ -1.14
LIG3-212ENST00000590181 SBSPONQ8IVN8 264 aa7.93□□□□□ -1.14
LIG3-212ENST00000590181 UXS1Q8NBZ7 420 aa7.93□□□□□ -1.14
LIG3-212ENST00000590181 OR13C8Q8NGS7 320 aa7.93□□□□□ -1.14
LIG3-212ENST00000590181 IL17DQ8TAD2 202 aa7.93□□□□□ -1.14
LIG3-212ENST00000590181 RBPMSQ93062 196 aaKnown RBP7.93□□□□□ -1.14
LIG3-212ENST00000590181 MRGPRFQ96AM1 343 aa7.93□□□□□ -1.14
LIG3-212ENST00000590181 GALNT14Q96FL9 552 aa7.93□□□□□ -1.14
LIG3-212ENST00000590181 SPAG8Q99932 426 aaPredicted RBP7.93□□□□□ -1.14
LIG3-212ENST00000590181 SLIRPQ9GZT3 109 aaKnown RBP7.93□□□□□ -1.14
LIG3-212ENST00000590181 C6orf62Q9GZU0 229 aaPredicted RBP7.93□□□□□ -1.14
LIG3-212ENST00000590181 GPR132Q9UNW8 380 aa7.93□□□□□ -1.14
LIG3-212ENST00000590181 TRAV30A0A087WSZ9 112 aa7.92□□□□□ -1.14
LIG3-212ENST00000590181 TMEM213A2RRL7 107 aa7.92□□□□□ -1.14
LIG3-212ENST00000590181 MFSD2BA6NFX1 497 aa7.92□□□□□ -1.14
LIG3-212ENST00000590181 IFNA17P01571 189 aa7.92□□□□□ -1.14
LIG3-212ENST00000590181 IGKV1-39P01597 117 aa7.92□□□□□ -1.14
LIG3-212ENST00000590181 IGKV1D-39P04432 117 aa7.92□□□□□ -1.14
LIG3-212ENST00000590181 ANXA3P12429 323 aa7.92□□□□□ -1.14
LIG3-212ENST00000590181 GPR183P32249 361 aa7.92□□□□□ -1.14
LIG3-212ENST00000590181 TNFSF8P32971 234 aa7.92□□□□□ -1.14
LIG3-212ENST00000590181 PVRIGQ6DKI7 326 aa7.92□□□□□ -1.14
LIG3-212ENST00000590181 ADAMTSL5Q6ZMM2 481 aa7.92□□□□□ -1.14
LIG3-212ENST00000590181 SLC35G3Q8N808 338 aa7.92□□□□□ -1.14
LIG3-212ENST00000590181 DUSP18Q8NEJ0 188 aa7.92□□□□□ -1.14
LIG3-212ENST00000590181 MCFD2Q8NI22 146 aa7.92□□□□□ -1.14
LIG3-212ENST00000590181 RNASE11Q8TAA1 199 aaKnown RBP7.92□□□□□ -1.14
LIG3-212ENST00000590181 MARCH1Q8TCQ1 289 aa7.92□□□□□ -1.14
LIG3-212ENST00000590181 TMEM190Q8WZ59 177 aa7.92□□□□□ -1.14
LIG3-212ENST00000590181 TP53RKQ96S44 253 aa7.92□□□□□ -1.14
LIG3-212ENST00000590181 NEURL2Q9BR09 285 aa7.92□□□□□ -1.14
LIG3-212ENST00000590181 GINS3Q9BRX5 216 aa7.92□□□□□ -1.14
LIG3-212ENST00000590181 NSG2Q9Y328 171 aa7.92□□□□□ -1.14
LIG3-212ENST00000590181 TMEM56-RWDD3S4R434 201 aa7.92□□□□□ -1.14
LIG3-212ENST00000590181 A0A0B4J293 547 aa7.91□□□□□ -1.14
LIG3-212ENST00000590181 DUXBA0A1W2PPF3 345 aa7.91□□□□□ -1.14
LIG3-212ENST00000590181 RPS10-NUDT3A0A1W2PQS6 291 aa7.91□□□□□ -1.14
LIG3-212ENST00000590181 OR2T8A6NH00 312 aa7.91□□□□□ -1.14
LIG3-212ENST00000590181 CRYM-AS1A6NIL9 109 aa7.91□□□□□ -1.14
LIG3-212ENST00000590181 I3L2K1 104 aa7.91□□□□□ -1.14
LIG3-212ENST00000590181 K7EIM0 57 aa7.91□□□□□ -1.14
LIG3-212ENST00000590181 TSPAN4O14817 238 aa7.91□□□□□ -1.14
LIG3-212ENST00000590181 CTSGP08311 255 aa7.91□□□□□ -1.14
LIG3-212ENST00000590181 HTR2BP41595 481 aa7.91□□□□□ -1.14
LIG3-212ENST00000590181 CD81P60033 236 aa7.91□□□□□ -1.14
LIG3-212ENST00000590181 DEFA5Q01523 94 aa7.91□□□□□ -1.14
LIG3-212ENST00000590181 GUCA2BQ16661 112 aa7.91□□□□□ -1.14
LIG3-212ENST00000590181 GLYATL2Q8WU03 294 aa7.91□□□□□ -1.14
LIG3-212ENST00000590181 OR10C1Q96KK4 312 aa7.91□□□□□ -1.14
LIG3-212ENST00000590181 CITED4Q96RK1 184 aa7.91□□□□□ -1.14
LIG3-212ENST00000590181 SLC25A21Q9BQT8 299 aaPredicted RBP7.91□□□□□ -1.14
LIG3-212ENST00000590181 RTBDNQ9BSG5 229 aaPredicted RBP7.91□□□□□ -1.14
LIG3-212ENST00000590181 NAA60Q9H7X0 242 aa7.91□□□□□ -1.14
LIG3-212ENST00000590181 OR11H12B2RN74 326 aa7.9□□□□□ -1.14
LIG3-212ENST00000590181 GNG7O60262 68 aa7.9□□□□□ -1.14
LIG3-212ENST00000590181 IGKV1-5P01602 117 aa7.9□□□□□ -1.14
LIG3-212ENST00000590181 PPP5CP53041 499 aa7.9□□□□□ -1.14
LIG3-212ENST00000590181 HAGHQ16775 308 aa7.9□□□□□ -1.14
LIG3-212ENST00000590181 Q56UQ5 140 aa7.9□□□□□ -1.14
LIG3-212ENST00000590181 ETFRF1Q6IPR1 90 aa7.9□□□□□ -1.14
LIG3-212ENST00000590181 LINC00322Q6ZN03 302 aaPredicted RBP7.9□□□□□ -1.14
LIG3-212ENST00000590181 OR4D10Q8NGI6 311 aa7.9□□□□□ -1.14
LIG3-212ENST00000590181 OR51S1Q8NGJ8 323 aa7.9□□□□□ -1.14
LIG3-212ENST00000590181 OR52B4Q8NGK2 314 aa7.9□□□□□ -1.14
LIG3-212ENST00000590181 OR4C16Q8NGL9 310 aa7.9□□□□□ -1.14
LIG3-212ENST00000590181 KRTAP17-1Q9BYP8 105 aa7.9□□□□□ -1.14
LIG3-212ENST00000590181 TMEM231Q9H6L2 316 aa7.9□□□□□ -1.14
LIG3-212ENST00000590181 NDUFA13Q9P0J0 144 aa7.9□□□□□ -1.14
LIG3-212ENST00000590181 CEPT1Q9Y6K0 416 aa7.9□□□□□ -1.14
LIG3-212ENST00000590181 A0A0B4J2A0 478 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 A0A1W2PS18 150 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 IZUMO1RA6ND01 250 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 OR4C46A6NHA9 309 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 DBX1A6NMT0 343 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 UBE2CO00762 179 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 ST8SIA3O43173 380 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 MT-CO2P00403 227 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 IGHV3-23P01764 117 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 SLC25A4P12235 298 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 PI3P19957 117 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 ETV6P41212 452 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 CCR6P51684 374 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 MFAP2P55001 183 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 PAFAH1B2P68402 229 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 CNPY1Q3B7I2 92 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 TM4SF20Q53R12 229 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 TMEM128Q5BJH2 165 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 RNASE12Q5GAN4 147 aaKnown RBP7.89□□□□□ -1.15
LIG3-212ENST00000590181 SPANXN2Q5MJ10 180 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 TMEM61Q8N0U2 210 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 TOMM5Q8N4H5 51 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 RNASEH2CQ8TDP1 164 aaKnown RBP7.89□□□□□ -1.15
LIG3-212ENST00000590181 MISP3Q96FF7 219 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 HIPK2Q9H2X6 1198 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 MLXQ9UH92 298 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 SHPKQ9UHJ6 478 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 U3KQ87 197 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 FRAS1Q86XX4 4008 aa7.89□□□□□ -1.15
LIG3-212ENST00000590181 TRAV14DV4A0A0A6YYC5 116 aa7.88□□□□□ -1.15
LIG3-212ENST00000590181 TRAV2A0A0B4J234 112 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms