RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 TMEM190Q8WZ59 177 aa18.03■□□□□ 0.48
SHMT1-206ENST00000579558 TRIM63Q969Q1 353 aa18.03■□□□□ 0.48
SHMT1-206ENST00000579558 MARC2Q969Z3 335 aa18.03■□□□□ 0.48
SHMT1-206ENST00000579558 CHRDL1Q9BU40 450 aa18.03■□□□□ 0.48
SHMT1-206ENST00000579558 MLXQ9UH92 298 aa18.03■□□□□ 0.48
SHMT1-206ENST00000579558 MT-CO2P00403 227 aa18.02■□□□□ 0.48
SHMT1-206ENST00000579558 SNCAP37840 140 aa18.02■□□□□ 0.48
SHMT1-206ENST00000579558 ETV6P41212 452 aa18.02■□□□□ 0.48
SHMT1-206ENST00000579558 HOXA1P49639 335 aaPredicted RBP18.02■□□□□ 0.48
SHMT1-206ENST00000579558 ELLP55199 621 aaPredicted RBP18.02■□□□□ 0.48
SHMT1-206ENST00000579558 AP3S2P59780 193 aa18.02■□□□□ 0.48
SHMT1-206ENST00000579558 KLF9Q13886 244 aaPredicted RBP18.02■□□□□ 0.48
SHMT1-206ENST00000579558 ZNF79Q15937 498 aa18.02■□□□□ 0.48
SHMT1-206ENST00000579558 TMEM268Q5VZI3 342 aa18.02■□□□□ 0.48
SHMT1-206ENST00000579558 BTNL8Q6UX41 500 aa18.02■□□□□ 0.48
SHMT1-206ENST00000579558 PINX1Q96BK5 328 aaKnown RBP18.02■□□□□ 0.48
SHMT1-206ENST00000579558 WDR89Q96FK6 387 aaPredicted RBP18.02■□□□□ 0.48
SHMT1-206ENST00000579558 ENY2Q9NPA8 101 aa18.02■□□□□ 0.48
SHMT1-206ENST00000579558 GAR1Q9NY12 217 aaKnown RBP18.02■□□□□ 0.48
SHMT1-206ENST00000579558 KMT2CQ8NEZ4 4911 aaKnown RBP18.01■□□□□ 0.47
SHMT1-206ENST00000579558 INS-IGF2F8WCM5 200 aa18.01■□□□□ 0.47
SHMT1-206ENST00000579558 ADMP35318 185 aa18.01■□□□□ 0.47
SHMT1-206ENST00000579558 MFAP4P55083 255 aa18.01■□□□□ 0.47
SHMT1-206ENST00000579558 Q6ZRM9 215 aa18.01■□□□□ 0.47
SHMT1-206ENST00000579558 CCDC190Q86UF4 302 aa18.01■□□□□ 0.47
SHMT1-206ENST00000579558 TMEM61Q8N0U2 210 aa18.01■□□□□ 0.47
SHMT1-206ENST00000579558 TOMM5Q8N4H5 51 aa18.01■□□□□ 0.47
SHMT1-206ENST00000579558 TMEM230Q96A57 120 aa18.01■□□□□ 0.47
SHMT1-206ENST00000579558 NEURL2Q9BR09 285 aa18.01■□□□□ 0.47
SHMT1-206ENST00000579558 TUBA4BQ9H853 241 aa18.01■□□□□ 0.47
SHMT1-206ENST00000579558 MRPL27Q9P0M9 148 aaKnown RBP18.01■□□□□ 0.47
SHMT1-206ENST00000579558 KCNIP3Q9Y2W7 256 aa18.01■□□□□ 0.47
SHMT1-206ENST00000579558 NBEAL2Q6ZNJ1 2754 aa18■□□□□ 0.47
SHMT1-206ENST00000579558 NDUFA4O00483 81 aa18■□□□□ 0.47
SHMT1-206ENST00000579558 C8orf88P0DMB2 117 aa18■□□□□ 0.47
SHMT1-206ENST00000579558 ZMAT4Q9H898 229 aa18■□□□□ 0.47
SHMT1-206ENST00000579558 CTNNBIP1Q9NSA3 81 aaPredicted RBP18■□□□□ 0.47
SHMT1-206ENST00000579558 NUPL2O15504 423 aaKnown RBP17.99■□□□□ 0.47
SHMT1-206ENST00000579558 IGHV3-48P01763 117 aa17.99■□□□□ 0.47
SHMT1-206ENST00000579558 CTSGP08311 255 aa17.99■□□□□ 0.47
SHMT1-206ENST00000579558 CD7P09564 240 aa17.99■□□□□ 0.47
SHMT1-206ENST00000579558 AKR1C4P17516 323 aa17.99■□□□□ 0.47
SHMT1-206ENST00000579558 GPR146Q96CH1 333 aa17.99■□□□□ 0.47
SHMT1-206ENST00000579558 GALNT14Q96FL9 552 aa17.99■□□□□ 0.47
SHMT1-206ENST00000579558 RCHY1Q96PM5 261 aa17.99■□□□□ 0.47
SHMT1-206ENST00000579558 TXN2Q99757 166 aa17.99■□□□□ 0.47
SHMT1-206ENST00000579558 C20orf24Q9BUV8 137 aa17.99■□□□□ 0.47
SHMT1-206ENST00000579558 DAZ1Q9NQZ3 744 aaKnown RBP17.99■□□□□ 0.47
SHMT1-206ENST00000579558 CACNG5Q9UF02 275 aa17.99■□□□□ 0.47
SHMT1-206ENST00000579558 TMEM56-RWDD3S4R434 201 aa17.99■□□□□ 0.47
SHMT1-206ENST00000579558 FCGR2BP31994 310 aaPredicted RBP17.98■□□□□ 0.47
SHMT1-206ENST00000579558 SUB1P53999 127 aaKnown RBP eCLIP17.98■□□□□ 0.47
SHMT1-206ENST00000579558 SPCS3P61009 180 aa17.98■□□□□ 0.47
SHMT1-206ENST00000579558 TMEM187Q14656 261 aa17.98■□□□□ 0.47
SHMT1-206ENST00000579558 SPANXN2Q5MJ10 180 aa17.98■□□□□ 0.47
SHMT1-206ENST00000579558 PRR13Q9NZ81 148 aa17.98■□□□□ 0.47
SHMT1-206ENST00000579558 IGHV3OR16-8A0A075B7F1 116 aa17.97■□□□□ 0.47
SHMT1-206ENST00000579558 SCAF4O95104 1147 aaKnown RBP17.97■□□□□ 0.47
SHMT1-206ENST00000579558 RNASE2P10153 161 aaKnown RBP17.97■□□□□ 0.47
SHMT1-206ENST00000579558 RELQ04864 619 aaPredicted RBP17.97■□□□□ 0.47
SHMT1-206ENST00000579558 AARDQ4LEZ3 155 aa17.97■□□□□ 0.47
SHMT1-206ENST00000579558 IL22RA2Q969J5 263 aa17.97■□□□□ 0.47
SHMT1-206ENST00000579558 CORTO00230 105 aa17.96■□□□□ 0.47
SHMT1-206ENST00000579558 GNG7O60262 68 aa17.96■□□□□ 0.47
SHMT1-206ENST00000579558 OR52E5Q8NH55 327 aa17.96■□□□□ 0.47
SHMT1-206ENST00000579558 TM2D3Q9BRN9 247 aa17.96■□□□□ 0.47
SHMT1-206ENST00000579558 TRAV25A0A0B4J276 109 aa17.95■□□□□ 0.46
SHMT1-206ENST00000579558 ZNF207O43670 478 aaKnown RBP17.95■□□□□ 0.46
SHMT1-206ENST00000579558 SUPT4H1P63272 117 aaKnown RBP17.95■□□□□ 0.46
SHMT1-206ENST00000579558 PVRIGQ6DKI7 326 aa17.95■□□□□ 0.46
SHMT1-206ENST00000579558 RBPMS2Q6ZRY4 209 aaKnown RBP17.95■□□□□ 0.46
SHMT1-206ENST00000579558 SLC16A13Q7RTY0 426 aa17.95■□□□□ 0.46
SHMT1-206ENST00000579558 DUSP18Q8NEJ0 188 aa17.95■□□□□ 0.46
SHMT1-206ENST00000579558 DEDD2Q8WXF8 326 aa17.95■□□□□ 0.46
SHMT1-206ENST00000579558 WFDC10AQ9H1F0 79 aa17.95■□□□□ 0.46
SHMT1-206ENST00000579558 HUWE1Q7Z6Z7 4374 aaKnown RBP17.94■□□□□ 0.46
SHMT1-206ENST00000579558 C15orf62A8K5M9 175 aa17.94■□□□□ 0.46
SHMT1-206ENST00000579558 OR11H12B2RN74 326 aa17.94■□□□□ 0.46
SHMT1-206ENST00000579558 K7EMT4 169 aa17.94■□□□□ 0.46
SHMT1-206ENST00000579558 YIF1AO95070 293 aa17.94■□□□□ 0.46
SHMT1-206ENST00000579558 ANXA3P12429 323 aa17.94■□□□□ 0.46
SHMT1-206ENST00000579558 NPBWR1P48145 328 aa17.94■□□□□ 0.46
SHMT1-206ENST00000579558 TMED4Q7Z7H5 227 aa17.94■□□□□ 0.46
SHMT1-206ENST00000579558 DEFB125Q8N687 156 aa17.94■□□□□ 0.46
SHMT1-206ENST00000579558 OR52B4Q8NGK2 314 aa17.94■□□□□ 0.46
SHMT1-206ENST00000579558 SRRQ9GZT4 340 aa17.94■□□□□ 0.46
SHMT1-206ENST00000579558 SULT1A3P0DMM9 295 aa17.93■□□□□ 0.46
SHMT1-206ENST00000579558 SULT1A4P0DMN0 295 aa17.93■□□□□ 0.46
SHMT1-206ENST00000579558 SRPXP78539 464 aa17.93■□□□□ 0.46
SHMT1-206ENST00000579558 HAGHQ16775 308 aa17.93■□□□□ 0.46
SHMT1-206ENST00000579558 ANKRD55Q3KP44 614 aa17.93■□□□□ 0.46
SHMT1-206ENST00000579558 ZNF414Q96IQ9 312 aa17.93■□□□□ 0.46
SHMT1-206ENST00000579558 HEYLQ9NQ87 328 aaPredicted RBP17.93■□□□□ 0.46
SHMT1-206ENST00000579558 A0A0B4J2A0 478 aa17.92■□□□□ 0.46
SHMT1-206ENST00000579558 CEBPZOSA8MTT3 80 aa17.92■□□□□ 0.46
SHMT1-206ENST00000579558 OPRK1P41145 380 aa17.92■□□□□ 0.46
SHMT1-206ENST00000579558 HTR2BP41595 481 aa17.92■□□□□ 0.46
SHMT1-206ENST00000579558 BSXQ3C1V8 233 aa17.92■□□□□ 0.46
SHMT1-206ENST00000579558 LGI3Q8N145 548 aa17.92■□□□□ 0.46
SHMT1-206ENST00000579558 SLC25A21Q9BQT8 299 aaPredicted RBP17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms