RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 CXorf58Q96LI9 332 aa14.07□□□□□ -0.16
CCDC40-213ENST00000574933 RAB40CQ96S21 281 aa14.07□□□□□ -0.16
CCDC40-213ENST00000574933 ATP6V0BQ99437 205 aa14.07□□□□□ -0.16
CCDC40-213ENST00000574933 MGAT4CQ9UBM8 478 aa14.07□□□□□ -0.16
CCDC40-213ENST00000574933 ANK2Q01484 3957 aa14.07□□□□□ -0.16
CCDC40-213ENST00000574933 VWFP04275 2813 aa14.06□□□□□ -0.16
CCDC40-213ENST00000574933 I3L2K1 104 aa14.06□□□□□ -0.16
CCDC40-213ENST00000574933 K7EIM0 57 aa14.06□□□□□ -0.16
CCDC40-213ENST00000574933 K7EPK0 472 aa14.06□□□□□ -0.16
CCDC40-213ENST00000574933 WRBO00258 174 aa14.06□□□□□ -0.16
CCDC40-213ENST00000574933 TAS2R30P59541 319 aa14.06□□□□□ -0.16
CCDC40-213ENST00000574933 RRAS2P62070 204 aaPredicted RBP14.06□□□□□ -0.16
CCDC40-213ENST00000574933 DEFA5Q01523 94 aa14.06□□□□□ -0.16
CCDC40-213ENST00000574933 FCN2Q15485 313 aa14.06□□□□□ -0.16
CCDC40-213ENST00000574933 NSUN5P1Q3KNT7 163 aa14.06□□□□□ -0.16
CCDC40-213ENST00000574933 Q6ZNX1 250 aa14.06□□□□□ -0.16
CCDC40-213ENST00000574933 C11orf1Q9H5F2 150 aa14.06□□□□□ -0.16
CCDC40-213ENST00000574933 A0A1W2PRX2 142 aa14.05□□□□□ -0.16
CCDC40-213ENST00000574933 C15orf62A8K5M9 175 aa14.05□□□□□ -0.16
CCDC40-213ENST00000574933 NUDT19A8MXV4 375 aa14.05□□□□□ -0.16
CCDC40-213ENST00000574933 M0QZ24 198 aa14.05□□□□□ -0.16
CCDC40-213ENST00000574933 TMEM50AO95807 157 aa14.05□□□□□ -0.16
CCDC40-213ENST00000574933 SCGB1D2O95969 90 aa14.05□□□□□ -0.16
CCDC40-213ENST00000574933 IFNA10P01566 189 aa14.05□□□□□ -0.16
CCDC40-213ENST00000574933 IGHV3-11P01762 117 aa14.05□□□□□ -0.16
CCDC40-213ENST00000574933 IAPPP10997 89 aa14.05□□□□□ -0.16
CCDC40-213ENST00000574933 CXCL3P19876 107 aa14.05□□□□□ -0.16
CCDC40-213ENST00000574933 FCGR2BP31994 310 aaPredicted RBP14.05□□□□□ -0.16
CCDC40-213ENST00000574933 PAX9P55771 341 aa14.05□□□□□ -0.16
CCDC40-213ENST00000574933 EXOSC2Q13868 293 aaKnown RBP14.05□□□□□ -0.16
CCDC40-213ENST00000574933 OR11H7Q8NGC8 314 aa14.05□□□□□ -0.16
CCDC40-213ENST00000574933 RNASEH2CQ8TDP1 164 aaKnown RBP14.05□□□□□ -0.16
CCDC40-213ENST00000574933 EEF1AKMT3Q96AZ1 226 aa14.05□□□□□ -0.16
CCDC40-213ENST00000574933 NOTCH3Q9UM47 2321 aa14.04□□□□□ -0.16
CCDC40-213ENST00000574933 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.04□□□□□ -0.16
CCDC40-213ENST00000574933 TRBV7-1A0A0A6YYK4 115 aa14.04□□□□□ -0.16
CCDC40-213ENST00000574933 MFSD2BA6NFX1 497 aa14.04□□□□□ -0.16
CCDC40-213ENST00000574933 RPP30P78346 268 aaKnown RBP14.04□□□□□ -0.16
CCDC40-213ENST00000574933 RAB32Q13637 225 aa14.04□□□□□ -0.16
CCDC40-213ENST00000574933 FHL3Q13643 280 aa14.04□□□□□ -0.16
CCDC40-213ENST00000574933 ETV3LQ6ZN32 361 aa14.04□□□□□ -0.16
CCDC40-213ENST00000574933 C8orf86Q6ZUL3 223 aa14.04□□□□□ -0.16
CCDC40-213ENST00000574933 OR4F17Q8NGA8 305 aa14.04□□□□□ -0.16
CCDC40-213ENST00000574933 ZNF502Q8TBZ5 544 aa14.04□□□□□ -0.16
CCDC40-213ENST00000574933 SCARB1Q8WTV0 552 aa14.04□□□□□ -0.16
CCDC40-213ENST00000574933 ASB13Q8WXK3 278 aa14.04□□□□□ -0.16
CCDC40-213ENST00000574933 MISP3Q96FF7 219 aa14.04□□□□□ -0.16
CCDC40-213ENST00000574933 CCDC140Q96MF4 163 aa14.04□□□□□ -0.16
CCDC40-213ENST00000574933 OR4F4Q96R69 305 aa14.04□□□□□ -0.16
CCDC40-213ENST00000574933 SSSCA1O60232 199 aa14.03□□□□□ -0.16
CCDC40-213ENST00000574933 TSC22D2O75157 780 aa14.03□□□□□ -0.16
CCDC40-213ENST00000574933 MT-CO2P00403 227 aa14.03□□□□□ -0.16
CCDC40-213ENST00000574933 HSPB1P04792 205 aaKnown RBP14.03□□□□□ -0.16
CCDC40-213ENST00000574933 RAX2Q96IS3 184 aa14.03□□□□□ -0.16
CCDC40-213ENST00000574933 OR4C12Q96R67 309 aa14.03□□□□□ -0.16
CCDC40-213ENST00000574933 FNDC4Q9H6D8 234 aaPredicted RBP14.03□□□□□ -0.16
CCDC40-213ENST00000574933 PSENENQ9NZ42 101 aa14.03□□□□□ -0.16
CCDC40-213ENST00000574933 MYCNOSP40205 109 aa14.02□□□□□ -0.17
CCDC40-213ENST00000574933 TMEM14EPQ6UXP3 125 aa14.02□□□□□ -0.17
CCDC40-213ENST00000574933 WDR89Q96FK6 387 aaPredicted RBP14.02□□□□□ -0.17
CCDC40-213ENST00000574933 OR5B12Q96R08 314 aa14.02□□□□□ -0.17
CCDC40-213ENST00000574933 TXN2Q99757 166 aa14.02□□□□□ -0.17
CCDC40-213ENST00000574933 RANGRFQ9HD47 186 aaPredicted RBP14.02□□□□□ -0.17
CCDC40-213ENST00000574933 C21orf62Q9NYP8 219 aa14.02□□□□□ -0.17
CCDC40-213ENST00000574933 PEF1Q9UBV8 284 aaKnown RBP14.02□□□□□ -0.17
CCDC40-213ENST00000574933 STRAPQ9Y3F4 350 aaKnown RBP14.02□□□□□ -0.17
CCDC40-213ENST00000574933 LSM5Q9Y4Y9 91 aaKnown RBP14.02□□□□□ -0.17
CCDC40-213ENST00000574933 PRSS46E5RG02 174 aa14.01□□□□□ -0.17
CCDC40-213ENST00000574933 F8W735 103 aaPredicted RBP14.01□□□□□ -0.17
CCDC40-213ENST00000574933 CCL24O00175 119 aa14.01□□□□□ -0.17
CCDC40-213ENST00000574933 DEDDO75618 318 aa14.01□□□□□ -0.17
CCDC40-213ENST00000574933 RAB11AP62491 216 aa14.01□□□□□ -0.17
CCDC40-213ENST00000574933 DEFB136Q30KP8 78 aa14.01□□□□□ -0.17
CCDC40-213ENST00000574933 SPANXN5Q5MJ07 72 aa14.01□□□□□ -0.17
CCDC40-213ENST00000574933 OR11H1Q8NG94 326 aa14.01□□□□□ -0.17
CCDC40-213ENST00000574933 OR1N2Q8NGR9 330 aa14.01□□□□□ -0.17
CCDC40-213ENST00000574933 PPP1R1CQ8WVI7 109 aa14.01□□□□□ -0.17
CCDC40-213ENST00000574933 ZNF436Q9C0F3 470 aaPredicted RBP14.01□□□□□ -0.17
CCDC40-213ENST00000574933 RPS10-NUDT3A0A1W2PQS6 291 aa14□□□□□ -0.17
CCDC40-213ENST00000574933 PMS2P5A8MQ11 134 aa14□□□□□ -0.17
CCDC40-213ENST00000574933 TSPAN15O95858 294 aa14□□□□□ -0.17
CCDC40-213ENST00000574933 GIPP09681 153 aaPredicted RBP14□□□□□ -0.17
CCDC40-213ENST00000574933 PVALBP20472 110 aaPredicted RBP14□□□□□ -0.17
CCDC40-213ENST00000574933 GPX4P36969 197 aaPredicted RBP14□□□□□ -0.17
CCDC40-213ENST00000574933 MFAP4P55083 255 aa14□□□□□ -0.17
CCDC40-213ENST00000574933 S100A10P60903 97 aa14□□□□□ -0.17
CCDC40-213ENST00000574933 CD69Q07108 199 aa14□□□□□ -0.17
CCDC40-213ENST00000574933 ZNF616Q08AN1 781 aa14□□□□□ -0.17
CCDC40-213ENST00000574933 ETFRF1Q6IPR1 90 aa14□□□□□ -0.17
CCDC40-213ENST00000574933 CACNG8Q8WXS5 425 aa14□□□□□ -0.17
CCDC40-213ENST00000574933 PINX1Q96BK5 328 aaKnown RBP14□□□□□ -0.17
CCDC40-213ENST00000574933 GAR1Q9NY12 217 aaKnown RBP14□□□□□ -0.17
CCDC40-213ENST00000574933 TRRAPQ9Y4A5 3859 aa14□□□□□ -0.17
CCDC40-213ENST00000574933 IGHV4OR15-8A0A075B7B6 117 aa13.99□□□□□ -0.17
CCDC40-213ENST00000574933 A0A087WW49 117 aa13.99□□□□□ -0.17
CCDC40-213ENST00000574933 IGHV3-21A0A0B4J1V1 117 aa13.99□□□□□ -0.17
CCDC40-213ENST00000574933 LINC01619G3V211 115 aa13.99□□□□□ -0.17
CCDC40-213ENST00000574933 H0YIZ8 118 aa13.99□□□□□ -0.17
CCDC40-213ENST00000574933 H3BP45 60 aa13.99□□□□□ -0.17
CCDC40-213ENST00000574933 L7N2F9 121 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms