RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 SNCAP37840 140 aa15.21■□□□□ 0.03
NUP88-204ENST00000572290 ETV6P41212 452 aa15.21■□□□□ 0.03
NUP88-204ENST00000572290 ELLP55199 621 aaPredicted RBP15.21■□□□□ 0.03
NUP88-204ENST00000572290 TMEM268Q5VZI3 342 aa15.21■□□□□ 0.03
NUP88-204ENST00000572290 Q6ZRM9 215 aa15.21■□□□□ 0.03
NUP88-204ENST00000572290 MARC2Q969Z3 335 aa15.21■□□□□ 0.03
NUP88-204ENST00000572290 TMEM230Q96A57 120 aa15.21■□□□□ 0.03
NUP88-204ENST00000572290 CHRDL1Q9BU40 450 aa15.21■□□□□ 0.03
NUP88-204ENST00000572290 ENY2Q9NPA8 101 aa15.21■□□□□ 0.03
NUP88-204ENST00000572290 C19orf73Q9NVV2 129 aa15.21■□□□□ 0.03
NUP88-204ENST00000572290 GAR1Q9NY12 217 aaKnown RBP15.21■□□□□ 0.03
NUP88-204ENST00000572290 TMEM56-RWDD3S4R434 201 aa15.21■□□□□ 0.03
NUP88-204ENST00000572290 MT-CO2P00403 227 aa15.2■□□□□ 0.02
NUP88-204ENST00000572290 HOXA1P49639 335 aaPredicted RBP15.2■□□□□ 0.02
NUP88-204ENST00000572290 MFAP4P55083 255 aa15.2■□□□□ 0.02
NUP88-204ENST00000572290 GUCA2BQ16661 112 aa15.2■□□□□ 0.02
NUP88-204ENST00000572290 ZNF57Q68EA5 555 aaPredicted RBP15.2■□□□□ 0.02
NUP88-204ENST00000572290 TMEM190Q8WZ59 177 aa15.2■□□□□ 0.02
NUP88-204ENST00000572290 PINX1Q96BK5 328 aaKnown RBP15.2■□□□□ 0.02
NUP88-204ENST00000572290 GALNT14Q96FL9 552 aa15.2■□□□□ 0.02
NUP88-204ENST00000572290 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.2■□□□□ 0.02
NUP88-204ENST00000572290 MRPL27Q9P0M9 148 aaKnown RBP15.2■□□□□ 0.02
NUP88-204ENST00000572290 MLXQ9UH92 298 aa15.2■□□□□ 0.02
NUP88-204ENST00000572290 NDUFA4O00483 81 aa15.19■□□□□ 0.02
NUP88-204ENST00000572290 C8orf88P0DMB2 117 aa15.19■□□□□ 0.02
NUP88-204ENST00000572290 AKR1C4P17516 323 aa15.19■□□□□ 0.02
NUP88-204ENST00000572290 FCGR2BP31994 310 aaPredicted RBP15.19■□□□□ 0.02
NUP88-204ENST00000572290 ADMP35318 185 aa15.19■□□□□ 0.02
NUP88-204ENST00000572290 CD81P60033 236 aa15.19■□□□□ 0.02
NUP88-204ENST00000572290 TMEM187Q14656 261 aa15.19■□□□□ 0.02
NUP88-204ENST00000572290 SPANXN2Q5MJ10 180 aa15.19■□□□□ 0.02
NUP88-204ENST00000572290 IL22RA2Q969J5 263 aa15.19■□□□□ 0.02
NUP88-204ENST00000572290 GPR146Q96CH1 333 aa15.19■□□□□ 0.02
NUP88-204ENST00000572290 WDR89Q96FK6 387 aaPredicted RBP15.19■□□□□ 0.02
NUP88-204ENST00000572290 WWC2-AS2Q96NR7 200 aa15.19■□□□□ 0.02
NUP88-204ENST00000572290 TXN2Q99757 166 aa15.19■□□□□ 0.02
NUP88-204ENST00000572290 SELENOKQ9Y6D0 94 aa15.19■□□□□ 0.02
NUP88-204ENST00000572290 CTSGP08311 255 aa15.18■□□□□ 0.02
NUP88-204ENST00000572290 SUB1P53999 127 aaKnown RBP eCLIP15.18■□□□□ 0.02
NUP88-204ENST00000572290 SPCS3P61009 180 aa15.18■□□□□ 0.02
NUP88-204ENST00000572290 AARDQ4LEZ3 155 aa15.18■□□□□ 0.02
NUP88-204ENST00000572290 BTNL8Q6UX41 500 aa15.18■□□□□ 0.02
NUP88-204ENST00000572290 OR52E5Q8NH55 327 aa15.18■□□□□ 0.02
NUP88-204ENST00000572290 DEDD2Q8WXF8 326 aa15.18■□□□□ 0.02
NUP88-204ENST00000572290 NEURL2Q9BR09 285 aa15.18■□□□□ 0.02
NUP88-204ENST00000572290 TUBA4BQ9H853 241 aa15.18■□□□□ 0.02
NUP88-204ENST00000572290 CACNG5Q9UF02 275 aa15.18■□□□□ 0.02
NUP88-204ENST00000572290 HUWE1Q7Z6Z7 4374 aaKnown RBP15.17■□□□□ 0.02
NUP88-204ENST00000572290 NUPL2O15504 423 aaKnown RBP15.17■□□□□ 0.02
NUP88-204ENST00000572290 IGHV3-48P01763 117 aa15.17■□□□□ 0.02
NUP88-204ENST00000572290 RNASE2P10153 161 aaKnown RBP15.17■□□□□ 0.02
NUP88-204ENST00000572290 RELQ04864 619 aaPredicted RBP15.17■□□□□ 0.02
NUP88-204ENST00000572290 TMEM61Q8N0U2 210 aa15.17■□□□□ 0.02
NUP88-204ENST00000572290 C20orf24Q9BUV8 137 aa15.17■□□□□ 0.02
NUP88-204ENST00000572290 DAZ1Q9NQZ3 744 aaKnown RBP15.17■□□□□ 0.02
NUP88-204ENST00000572290 PRR13Q9NZ81 148 aa15.17■□□□□ 0.02
NUP88-204ENST00000572290 CORTO00230 105 aa15.16■□□□□ 0.02
NUP88-204ENST00000572290 CD7P09564 240 aa15.16■□□□□ 0.02
NUP88-204ENST00000572290 ANXA3P12429 323 aa15.16■□□□□ 0.02
NUP88-204ENST00000572290 SUPT4H1P63272 117 aaKnown RBP15.16■□□□□ 0.02
NUP88-204ENST00000572290 PVRIGQ6DKI7 326 aa15.16■□□□□ 0.02
NUP88-204ENST00000572290 SRRQ9GZT4 340 aa15.16■□□□□ 0.02
NUP88-204ENST00000572290 ZMAT4Q9H898 229 aa15.16■□□□□ 0.02
NUP88-204ENST00000572290 COL7A1Q02388 2944 aa15.15■□□□□ 0.02
NUP88-204ENST00000572290 SORL1Q92673 2214 aa15.15■□□□□ 0.02
NUP88-204ENST00000572290 K7EMT4 169 aa15.15■□□□□ 0.02
NUP88-204ENST00000572290 GNG7O60262 68 aa15.15■□□□□ 0.02
NUP88-204ENST00000572290 TMED4Q7Z7H5 227 aa15.15■□□□□ 0.02
NUP88-204ENST00000572290 DUSP18Q8NEJ0 188 aa15.15■□□□□ 0.02
NUP88-204ENST00000572290 NDUFA13Q9P0J0 144 aa15.15■□□□□ 0.02
NUP88-204ENST00000572290 IGHV3OR16-8A0A075B7F1 116 aa15.14■□□□□ 0.01
NUP88-204ENST00000572290 TRAV25A0A0B4J276 109 aa15.14■□□□□ 0.01
NUP88-204ENST00000572290 SCAF4O95104 1147 aaKnown RBP15.14■□□□□ 0.01
NUP88-204ENST00000572290 SULT1A3P0DMM9 295 aa15.14■□□□□ 0.01
NUP88-204ENST00000572290 SULT1A4P0DMN0 295 aa15.14■□□□□ 0.01
NUP88-204ENST00000572290 NPBWR1P48145 328 aa15.14■□□□□ 0.01
NUP88-204ENST00000572290 SRPXP78539 464 aa15.14■□□□□ 0.01
NUP88-204ENST00000572290 RBPMS2Q6ZRY4 209 aaKnown RBP15.14■□□□□ 0.01
NUP88-204ENST00000572290 SLC16A13Q7RTY0 426 aa15.14■□□□□ 0.01
NUP88-204ENST00000572290 LGI3Q8N145 548 aa15.14■□□□□ 0.01
NUP88-204ENST00000572290 RCHY1Q96PM5 261 aa15.14■□□□□ 0.01
NUP88-204ENST00000572290 SLC25A21Q9BQT8 299 aaPredicted RBP15.14■□□□□ 0.01
NUP88-204ENST00000572290 A0A0B4J2A0 478 aa15.13■□□□□ 0.01
NUP88-204ENST00000572290 C15orf62A8K5M9 175 aa15.13■□□□□ 0.01
NUP88-204ENST00000572290 CEBPZOSA8MTT3 80 aa15.13■□□□□ 0.01
NUP88-204ENST00000572290 ZNF207O43670 478 aaKnown RBP15.13■□□□□ 0.01
NUP88-204ENST00000572290 YIF1AO95070 293 aa15.13■□□□□ 0.01
NUP88-204ENST00000572290 HTR2BP41595 481 aa15.13■□□□□ 0.01
NUP88-204ENST00000572290 BSXQ3C1V8 233 aa15.13■□□□□ 0.01
NUP88-204ENST00000572290 LYZL2Q7Z4W2 148 aa15.13■□□□□ 0.01
NUP88-204ENST00000572290 ZNF414Q96IQ9 312 aa15.13■□□□□ 0.01
NUP88-204ENST00000572290 TM2D3Q9BRN9 247 aa15.13■□□□□ 0.01
NUP88-204ENST00000572290 HEYLQ9NQ87 328 aaPredicted RBP15.13■□□□□ 0.01
NUP88-204ENST00000572290 CACFD1Q9UGQ2 172 aa15.13■□□□□ 0.01
NUP88-204ENST00000572290 SHPKQ9UHJ6 478 aa15.13■□□□□ 0.01
NUP88-204ENST00000572290 OR11H12B2RN74 326 aa15.12■□□□□ 0.01
NUP88-204ENST00000572290 INPP1P49441 399 aa15.12■□□□□ 0.01
NUP88-204ENST00000572290 CCR6P51684 374 aa15.12■□□□□ 0.01
NUP88-204ENST00000572290 ANKRD55Q3KP44 614 aa15.12■□□□□ 0.01
NUP88-204ENST00000572290 TMEM128Q5BJH2 165 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 150.4 ms