RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 ISG20L2Q9H9L3 353 aaKnown RBP4.7□□□□□ -1.66
VPS53-212ENST00000572259 CTSZQ9UBR2 303 aa4.7□□□□□ -1.66
VPS53-212ENST00000572259 RPUSD1Q9UJJ7 312 aaKnown RBP4.7□□□□□ -1.66
VPS53-212ENST00000572259 PAIP2BQ9ULR5 123 aaKnown RBP4.7□□□□□ -1.66
VPS53-212ENST00000572259 IGKV1D-17A0A075B6S4 117 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 TRAV40A0A0B4J280 105 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 M0R1W7 72 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 NBEAP1P0C6P0 100 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 S100A1P23297 94 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 PFN2P35080 140 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 RBMXP38159 391 aaKnown RBP4.69□□□□□ -1.66
VPS53-212ENST00000572259 RPL29P47914 159 aaKnown RBP4.69□□□□□ -1.66
VPS53-212ENST00000572259 TCL1AP56279 114 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 WNT4P56705 351 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 KRTAP10-11P60412 298 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 HNRNPA0Q13151 305 aaKnown RBP4.69□□□□□ -1.66
VPS53-212ENST00000572259 KISS1Q15726 138 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 C4orf26Q17RF5 130 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 SYT6Q5T7P8 510 aaPredicted RBP4.69□□□□□ -1.66
VPS53-212ENST00000572259 HES5Q5TA89 166 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.69□□□□□ -1.66
VPS53-212ENST00000572259 SAXO1Q8IYX7 474 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 FAM216BQ8N7L0 139 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 OR10W1Q8NGF6 305 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 GHSRQ92847 366 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 TMEM106AQ96A25 262 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 SEH1LQ96EE3 360 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 GAFA1Q96PS6 74 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 NRIP2Q9BQI9 281 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 ZNF649Q9BS31 505 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 FGF23Q9GZV9 251 aaPredicted RBP4.69□□□□□ -1.66
VPS53-212ENST00000572259 Q9H521 79 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 RNF167Q9H6Y7 350 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 HEXA-AS1Q9H8Q6 139 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 HES4Q9HCC6 221 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 TMEM138Q9NPI0 162 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 ZNF256Q9Y2P7 627 aaPredicted RBP4.69□□□□□ -1.66
VPS53-212ENST00000572259 ALG5Q9Y673 324 aa4.69□□□□□ -1.66
VPS53-212ENST00000572259 IGKV1D-8A0A087WSZ0 117 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 A0A0B4J2A0 478 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 A0A0G2JLM5 398 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 K7N7A8 449 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 ZNF780AO75290 641 aaPredicted RBP4.68□□□□□ -1.66
VPS53-212ENST00000572259 NXPH4O95158 308 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 CNIH1O95406 144 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 HAND1O96004 215 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 CRYBA1P05813 215 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 GABRR1P24046 479 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 PRTN3P24158 256 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 RPL12P30050 165 aaKnown RBP4.68□□□□□ -1.66
VPS53-212ENST00000572259 CEACAM6P40199 344 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 CRYBA4P53673 196 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 AQP4P55087 323 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 RAB25P57735 213 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 MEF2CQ06413 473 aaPredicted RBP4.68□□□□□ -1.66
VPS53-212ENST00000572259 BAMBIQ13145 260 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 ZNF146Q15072 292 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 RSU1Q15404 277 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 Q499Y3 187 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 PPP1R27Q86WC6 154 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 GATD1Q8NB37 220 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 CHST4Q8NCG5 386 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 LY6G5BQ8NDX9 201 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 OR51A4Q8NGJ6 313 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 OR51G1Q8NGK1 321 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 OR13A1Q8NGR1 328 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 MRGPRDQ8TDS7 321 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 SLC25A38Q96DW6 304 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 OR10C1Q96KK4 312 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 SELENOIQ9C0D9 397 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 MS4A6AQ9H2W1 248 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 ZNF430Q9H8G1 570 aaPredicted RBP4.68□□□□□ -1.66
VPS53-212ENST00000572259 SHPKQ9UHJ6 478 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 ZNF222Q9UK12 451 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 RAB22AQ9UL26 194 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 STAB1Q9NY15 2570 aa4.68□□□□□ -1.66
VPS53-212ENST00000572259 IGKV1-27A0A075B6S5 117 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 IGHV3OR16-10A0A075B7F0 116 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 IGHV1-69DA0A0B4J2H0 117 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 IGKV1-9A0A0C4DH69 117 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 CENPVL3A0A0U1RRI6 287 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 hADV38S2A0JD32 116 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 C15orf61A6NNL5 157 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 DEGS1O15121 323 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 VENTXO95231 258 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 IGHV1-69P01742 117 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 FBP1P09467 338 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 CD37P11049 281 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 ZNF93P35789 620 aaPredicted RBP4.67□□□□□ -1.66
VPS53-212ENST00000572259 EDDM3BP56851 147 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 GRK1Q15835 563 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 IZUMO2Q6UXV1 221 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 VMO1Q7Z5L0 202 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 MRPL55Q7Z7F7 128 aaKnown RBP4.67□□□□□ -1.66
VPS53-212ENST00000572259 GAPTQ8N292 157 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 TMEM86BQ8N661 226 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 CD177Q8N6Q3 437 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 SIGLECL1Q8N7X8 197 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 OR4C13Q8NGP0 309 aa4.67□□□□□ -1.66
VPS53-212ENST00000572259 OR13D1Q8NGV5 346 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms