RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 VSIRQ9H7M9 311 aa8.31□□□□□ -1.08
CLK3-222ENST00000568232 ACOT13Q9NPJ3 140 aa8.31□□□□□ -1.08
CLK3-222ENST00000568232 XCL2Q9UBD3 114 aa8.31□□□□□ -1.08
CLK3-222ENST00000568232 OR2W1Q9Y3N9 320 aa8.31□□□□□ -1.08
CLK3-222ENST00000568232 TMED3Q9Y3Q3 217 aa8.31□□□□□ -1.08
CLK3-222ENST00000568232 HMCN2Q8NDA2 5059 aa8.3□□□□□ -1.08
CLK3-222ENST00000568232 SLC17A2O00624 439 aa8.3□□□□□ -1.08
CLK3-222ENST00000568232 TNFSF12O43508 249 aa8.3□□□□□ -1.08
CLK3-222ENST00000568232 IGHV3-48P01763 117 aa8.3□□□□□ -1.08
CLK3-222ENST00000568232 ZNF688P0C7X2 276 aa8.3□□□□□ -1.08
CLK3-222ENST00000568232 XGP55808 180 aa8.3□□□□□ -1.08
CLK3-222ENST00000568232 C2orf76Q3KRA6 126 aa8.3□□□□□ -1.08
CLK3-222ENST00000568232 HSD17B12Q53GQ0 312 aa8.3□□□□□ -1.08
CLK3-222ENST00000568232 ZNRF2Q8NHG8 242 aa8.3□□□□□ -1.08
CLK3-222ENST00000568232 SRSF8Q9BRL6 282 aaKnown RBP8.3□□□□□ -1.08
CLK3-222ENST00000568232 ATG101Q9BSB4 218 aa8.3□□□□□ -1.08
CLK3-222ENST00000568232 ELF5Q9UKW6 265 aaPredicted RBP8.3□□□□□ -1.08
CLK3-222ENST00000568232 LSM2Q9Y333 95 aaKnown RBP8.3□□□□□ -1.08
CLK3-222ENST00000568232 AK6Q9Y3D8 172 aaKnown RBP8.3□□□□□ -1.08
CLK3-222ENST00000568232 F11RQ9Y624 299 aaKnown RBP8.3□□□□□ -1.08
CLK3-222ENST00000568232 FLG2Q5D862 2391 aaPredicted RBP8.3□□□□□ -1.08
CLK3-222ENST00000568232 TRAV2A0A0B4J234 112 aa8.29□□□□□ -1.08
CLK3-222ENST00000568232 TEX50A0A1B0GTY4 177 aa8.29□□□□□ -1.08
CLK3-222ENST00000568232 K7EQG2 157 aa8.29□□□□□ -1.08
CLK3-222ENST00000568232 GABARAPO95166 117 aa8.29□□□□□ -1.08
CLK3-222ENST00000568232 CD5P06127 495 aa8.29□□□□□ -1.08
CLK3-222ENST00000568232 EIF4EP06730 217 aaKnown RBP8.29□□□□□ -1.08
CLK3-222ENST00000568232 TRAPPC2P0DI81 140 aa8.29□□□□□ -1.08
CLK3-222ENST00000568232 TRAPPC2BP0DI82 140 aa8.29□□□□□ -1.08
CLK3-222ENST00000568232 FAM3BP58499 235 aaPredicted RBP8.29□□□□□ -1.08
CLK3-222ENST00000568232 RAB11BQ15907 218 aa8.29□□□□□ -1.08
CLK3-222ENST00000568232 FAM222AQ5U5X8 452 aa8.29□□□□□ -1.08
CLK3-222ENST00000568232 TOMM20LQ6UXN7 152 aa8.29□□□□□ -1.08
CLK3-222ENST00000568232 NANOGP1Q8N7R0 232 aa8.29□□□□□ -1.08
CLK3-222ENST00000568232 STXBP6Q8NFX7 210 aa8.29□□□□□ -1.08
CLK3-222ENST00000568232 FAM3DQ96BQ1 224 aa8.29□□□□□ -1.08
CLK3-222ENST00000568232 KRTAP4-12Q9BQ66 201 aa8.29□□□□□ -1.08
CLK3-222ENST00000568232 NIPSNAP3BQ9BS92 247 aa8.29□□□□□ -1.08
CLK3-222ENST00000568232 FUNDC2Q9BWH2 189 aa8.29□□□□□ -1.08
CLK3-222ENST00000568232 NXF2Q9GZY0 626 aaKnown RBP8.29□□□□□ -1.08
CLK3-222ENST00000568232 MDFICQ9P1T7 246 aa8.29□□□□□ -1.08
CLK3-222ENST00000568232 DKK2Q9UBU2 259 aa8.29□□□□□ -1.08
CLK3-222ENST00000568232 TMEM272A0A1B0GTI8 110 aa8.28□□□□□ -1.08
CLK3-222ENST00000568232 MFNGO00587 321 aa8.28□□□□□ -1.08
CLK3-222ENST00000568232 SLC22A5O76082 557 aa8.28□□□□□ -1.08
CLK3-222ENST00000568232 PSMB9P28065 219 aa8.28□□□□□ -1.08
CLK3-222ENST00000568232 FUSP35637 526 aaKnown RBP eCLIP8.28□□□□□ -1.08
CLK3-222ENST00000568232 WNT4P56705 351 aa8.28□□□□□ -1.08
CLK3-222ENST00000568232 SPAG16Q8N0X2 631 aa8.28□□□□□ -1.08
CLK3-222ENST00000568232 S100ZQ8WXG8 99 aa8.28□□□□□ -1.08
CLK3-222ENST00000568232 FRZBQ92765 325 aa8.28□□□□□ -1.08
CLK3-222ENST00000568232 SLC25A46Q96AG3 418 aa8.28□□□□□ -1.08
CLK3-222ENST00000568232 YIPF6Q96EC8 236 aa8.28□□□□□ -1.08
CLK3-222ENST00000568232 RAB40CQ96S21 281 aa8.28□□□□□ -1.08
CLK3-222ENST00000568232 HINT2Q9BX68 163 aa8.28□□□□□ -1.08
CLK3-222ENST00000568232 TMEM140Q9NV12 185 aa8.28□□□□□ -1.08
CLK3-222ENST00000568232 GHRHP01286 108 aa8.27□□□□□ -1.09
CLK3-222ENST00000568232 UCHL1P09936 223 aa8.27□□□□□ -1.09
CLK3-222ENST00000568232 HIST1H1DP16402 221 aaKnown RBP8.27□□□□□ -1.09
CLK3-222ENST00000568232 TALDO1P37837 337 aa8.27□□□□□ -1.09
CLK3-222ENST00000568232 SSX1Q16384 188 aa8.27□□□□□ -1.09
CLK3-222ENST00000568232 Q6ZS49 121 aa8.27□□□□□ -1.09
CLK3-222ENST00000568232 MS4A15Q8N5U1 240 aa8.27□□□□□ -1.09
CLK3-222ENST00000568232 OR10R2Q8NGX6 335 aa8.27□□□□□ -1.09
CLK3-222ENST00000568232 BORCS5Q969J3 196 aa8.27□□□□□ -1.09
CLK3-222ENST00000568232 MND1Q9BWT6 205 aa8.27□□□□□ -1.09
CLK3-222ENST00000568232 MRPL18Q9H0U6 180 aaKnown RBP8.27□□□□□ -1.09
CLK3-222ENST00000568232 IGHV3OR16-12A0A075B7B8 117 aa8.26□□□□□ -1.09
CLK3-222ENST00000568232 SULT1C2O00338 296 aa8.26□□□□□ -1.09
CLK3-222ENST00000568232 MYL12BO14950 172 aa8.26□□□□□ -1.09
CLK3-222ENST00000568232 SMR3BP02814 79 aaPredicted RBP8.26□□□□□ -1.09
CLK3-222ENST00000568232 MFAP4P55083 255 aa8.26□□□□□ -1.09
CLK3-222ENST00000568232 TAS2R31P59538 309 aa8.26□□□□□ -1.09
CLK3-222ENST00000568232 DLK1P80370 383 aa8.26□□□□□ -1.09
CLK3-222ENST00000568232 ZNF705AQ6ZN79 300 aaPredicted RBP8.26□□□□□ -1.09
CLK3-222ENST00000568232 DMBX1Q8NFW5 382 aa8.26□□□□□ -1.09
CLK3-222ENST00000568232 DCANP1Q8TF63 244 aa8.26□□□□□ -1.09
CLK3-222ENST00000568232 GRAMD2BQ96HH9 432 aa8.26□□□□□ -1.09
CLK3-222ENST00000568232 AIFM2Q9BRQ8 373 aa8.26□□□□□ -1.09
CLK3-222ENST00000568232 GINS3Q9BRX5 216 aa8.26□□□□□ -1.09
CLK3-222ENST00000568232 WDR12Q9GZL7 423 aaKnown RBP8.26□□□□□ -1.09
CLK3-222ENST00000568232 CCL28Q9NRJ3 127 aa8.26□□□□□ -1.09
CLK3-222ENST00000568232 NDUFA4L2Q9NRX3 87 aa8.26□□□□□ -1.09
CLK3-222ENST00000568232 RAB22AQ9UL26 194 aa8.26□□□□□ -1.09
CLK3-222ENST00000568232 TMEM189A5PLL7 270 aa8.25□□□□□ -1.09
CLK3-222ENST00000568232 ZNF705FA8MVS1 300 aaPredicted RBP8.25□□□□□ -1.09
CLK3-222ENST00000568232 I3L2K1 104 aa8.25□□□□□ -1.09
CLK3-222ENST00000568232 ZNF705DP0CH99 300 aaPredicted RBP8.25□□□□□ -1.09
CLK3-222ENST00000568232 ZNF705BP0CI00 300 aaPredicted RBP8.25□□□□□ -1.09
CLK3-222ENST00000568232 NQO2P16083 231 aa8.25□□□□□ -1.09
CLK3-222ENST00000568232 CTF1Q16619 201 aa8.25□□□□□ -1.09
CLK3-222ENST00000568232 POU2AF1Q16633 256 aa8.25□□□□□ -1.09
CLK3-222ENST00000568232 PSMG4Q5JS54 123 aa8.25□□□□□ -1.09
CLK3-222ENST00000568232 HES5Q5TA89 166 aa8.25□□□□□ -1.09
CLK3-222ENST00000568232 HSD17B13Q7Z5P4 300 aaPredicted RBP8.25□□□□□ -1.09
CLK3-222ENST00000568232 OR1L8Q8NGR8 309 aa8.25□□□□□ -1.09
CLK3-222ENST00000568232 LSM10Q969L4 123 aaKnown RBP8.25□□□□□ -1.09
CLK3-222ENST00000568232 TMEM203Q969S6 136 aa8.25□□□□□ -1.09
CLK3-222ENST00000568232 MISP3Q96FF7 219 aa8.25□□□□□ -1.09
CLK3-222ENST00000568232 NEU1Q99519 415 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms