RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 GNG7O60262 68 aa12.78□□□□□ -0.36
CLK3-221ENST00000568139 IGHV3-48P01763 117 aa12.78□□□□□ -0.36
CLK3-221ENST00000568139 APOHP02749 345 aaPredicted RBP12.78□□□□□ -0.36
CLK3-221ENST00000568139 EIF4EP06730 217 aaKnown RBP12.78□□□□□ -0.36
CLK3-221ENST00000568139 GIG44P09565 113 aaPredicted RBP12.78□□□□□ -0.36
CLK3-221ENST00000568139 RBMY1A1P0DJD3 496 aaKnown RBP12.78□□□□□ -0.36
CLK3-221ENST00000568139 RBMY1CP0DJD4 496 aa12.78□□□□□ -0.36
CLK3-221ENST00000568139 RBMY1FQ15415 496 aaKnown RBP12.78□□□□□ -0.36
CLK3-221ENST00000568139 TOMM20LQ6UXN7 152 aa12.78□□□□□ -0.36
CLK3-221ENST00000568139 CMTM1Q8IZ96 169 aa12.78□□□□□ -0.36
CLK3-221ENST00000568139 FAM24BQ8N5W8 94 aa12.78□□□□□ -0.36
CLK3-221ENST00000568139 DUSP18Q8NEJ0 188 aa12.78□□□□□ -0.36
CLK3-221ENST00000568139 FCGR1BQ92637 280 aa12.78□□□□□ -0.36
CLK3-221ENST00000568139 RNF167Q9H6Y7 350 aa12.78□□□□□ -0.36
CLK3-221ENST00000568139 IFT46Q9NQC8 304 aa12.78□□□□□ -0.36
CLK3-221ENST00000568139 ANAPC10Q9UM13 185 aa12.78□□□□□ -0.36
CLK3-221ENST00000568139 MUC4Q99102 2169 aa12.77□□□□□ -0.36
CLK3-221ENST00000568139 A0A1B0GVY2 172 aa12.77□□□□□ -0.37
CLK3-221ENST00000568139 GPR31O00270 319 aa12.77□□□□□ -0.37
CLK3-221ENST00000568139 STHQ8IWL8 128 aa12.77□□□□□ -0.37
CLK3-221ENST00000568139 FAM212BQ9NTI7 297 aaPredicted RBP12.77□□□□□ -0.37
CLK3-221ENST00000568139 IGHV4-28A0A0C4DH34 117 aa12.76□□□□□ -0.37
CLK3-221ENST00000568139 XRCC3O43542 346 aa12.76□□□□□ -0.37
CLK3-221ENST00000568139 PMP2P02689 132 aa12.76□□□□□ -0.37
CLK3-221ENST00000568139 MIFP14174 115 aa12.76□□□□□ -0.37
CLK3-221ENST00000568139 NAT1P18440 290 aa12.76□□□□□ -0.37
CLK3-221ENST00000568139 HLA-DMBP28068 263 aa12.76□□□□□ -0.37
CLK3-221ENST00000568139 PRCDQ00LT1 54 aa12.76□□□□□ -0.37
CLK3-221ENST00000568139 TMEM41BQ5BJD5 291 aa12.76□□□□□ -0.37
CLK3-221ENST00000568139 SEC22AQ96IW7 307 aa12.76□□□□□ -0.37
CLK3-221ENST00000568139 FXYD6Q9H0Q3 95 aa12.76□□□□□ -0.37
CLK3-221ENST00000568139 ZFAND3Q9H8U3 227 aa12.76□□□□□ -0.37
CLK3-221ENST00000568139 RAB26Q9ULW5 256 aa12.76□□□□□ -0.37
CLK3-221ENST00000568139 IGHV4-4A0A075B6R2 117 aa12.75□□□□□ -0.37
CLK3-221ENST00000568139 TRAV10A0A0B4J240 114 aa12.75□□□□□ -0.37
CLK3-221ENST00000568139 ZNF705EA8MWA4 302 aaPredicted RBP12.75□□□□□ -0.37
CLK3-221ENST00000568139 TMEM127O75204 238 aa12.75□□□□□ -0.37
CLK3-221ENST00000568139 Q6ZTC4 211 aa12.75□□□□□ -0.37
CLK3-221ENST00000568139 TRPT1Q86TN4 253 aaKnown RBP12.75□□□□□ -0.37
CLK3-221ENST00000568139 PINX1Q96BK5 328 aaKnown RBP12.75□□□□□ -0.37
CLK3-221ENST00000568139 IGHV3-66A0A0C4DH42 116 aa12.74□□□□□ -0.37
CLK3-221ENST00000568139 NPBWR1P48145 328 aa12.74□□□□□ -0.37
CLK3-221ENST00000568139 TAS2R46P59540 309 aa12.74□□□□□ -0.37
CLK3-221ENST00000568139 HSPE1P61604 102 aaKnown RBP12.74□□□□□ -0.37
CLK3-221ENST00000568139 RPL11P62913 178 aaKnown RBP12.74□□□□□ -0.37
CLK3-221ENST00000568139 MORN3Q6PF18 240 aaPredicted RBP12.74□□□□□ -0.37
CLK3-221ENST00000568139 ZNF600Q6ZNG1 722 aa12.74□□□□□ -0.37
CLK3-221ENST00000568139 OR5H2Q8NGV7 314 aa12.74□□□□□ -0.37
CLK3-221ENST00000568139 OR6F1Q8NGZ6 308 aa12.74□□□□□ -0.37
CLK3-221ENST00000568139 OR4A16Q8NH70 328 aa12.74□□□□□ -0.37
CLK3-221ENST00000568139 RNF126Q9BV68 326 aa12.74□□□□□ -0.37
CLK3-221ENST00000568139 PUS1Q9Y606 427 aaKnown RBP eCLIP12.74□□□□□ -0.37
CLK3-221ENST00000568139 X6R8D5 127 aa12.74□□□□□ -0.37
CLK3-221ENST00000568139 ELOA3CA0A087WX78 387 aaPredicted RBP12.73□□□□□ -0.37
CLK3-221ENST00000568139 K7EQG2 157 aa12.73□□□□□ -0.37
CLK3-221ENST00000568139 TMEM50AO95807 157 aa12.73□□□□□ -0.37
CLK3-221ENST00000568139 IGKV1-39P01597 117 aa12.73□□□□□ -0.37
CLK3-221ENST00000568139 IGKV1D-39P04432 117 aa12.73□□□□□ -0.37
CLK3-221ENST00000568139 MED14OSP0DP75 135 aa12.73□□□□□ -0.37
CLK3-221ENST00000568139 SPP1P10451 314 aa12.73□□□□□ -0.37
CLK3-221ENST00000568139 ERHP84090 104 aaKnown RBP12.73□□□□□ -0.37
CLK3-221ENST00000568139 PHLDA2Q53GA4 152 aa12.73□□□□□ -0.37
CLK3-221ENST00000568139 PVRIGQ6DKI7 326 aa12.73□□□□□ -0.37
CLK3-221ENST00000568139 H2BFWTQ7Z2G1 175 aa12.73□□□□□ -0.37
CLK3-221ENST00000568139 S100A16Q96FQ6 103 aaKnown RBP12.73□□□□□ -0.37
CLK3-221ENST00000568139 TMEM231Q9H6L2 316 aa12.73□□□□□ -0.37
CLK3-221ENST00000568139 RABAC1Q9UI14 185 aa12.73□□□□□ -0.37
CLK3-221ENST00000568139 LOC100506127A0A0U1RQW1 187 aa12.72□□□□□ -0.37
CLK3-221ENST00000568139 A0A1B0GU03 582 aa12.72□□□□□ -0.37
CLK3-221ENST00000568139 LPCAT3Q6P1A2 487 aa12.72□□□□□ -0.37
CLK3-221ENST00000568139 LYSMD2Q8IV50 215 aa12.72□□□□□ -0.37
CLK3-221ENST00000568139 GRAMD2BQ96HH9 432 aa12.72□□□□□ -0.37
CLK3-221ENST00000568139 FAT2Q9NYQ8 4349 aa12.71□□□□□ -0.37
CLK3-221ENST00000568139 PKHD1P08F94 4074 aa12.71□□□□□ -0.37
CLK3-221ENST00000568139 A0A1W2PS18 150 aa12.71□□□□□ -0.37
CLK3-221ENST00000568139 C4BPBP20851 252 aa12.71□□□□□ -0.37
CLK3-221ENST00000568139 NPPCP23582 126 aa12.71□□□□□ -0.37
CLK3-221ENST00000568139 S100GP29377 79 aa12.71□□□□□ -0.37
CLK3-221ENST00000568139 TBC1D26Q86UD7 250 aa12.71□□□□□ -0.37
CLK3-221ENST00000568139 CSNK1G2-AS1Q8NCQ2 148 aa12.71□□□□□ -0.37
CLK3-221ENST00000568139 RYR1P21817 5038 aa12.71□□□□□ -0.38
CLK3-221ENST00000568139 INS-IGF2F8WCM5 200 aa12.7□□□□□ -0.38
CLK3-221ENST00000568139 HRH1P35367 487 aa12.7□□□□□ -0.38
CLK3-221ENST00000568139 TAS2R20P59543 309 aa12.7□□□□□ -0.38
CLK3-221ENST00000568139 CENPSQ8N2Z9 138 aa12.7□□□□□ -0.38
CLK3-221ENST00000568139 MRGPRFQ96AM1 343 aa12.7□□□□□ -0.38
CLK3-221ENST00000568139 YTHDF1Q9BYJ9 559 aaKnown RBP12.7□□□□□ -0.38
CLK3-221ENST00000568139 DNAH2Q9P225 4427 aa12.7□□□□□ -0.38
CLK3-221ENST00000568139 KNCNA6PVL3 124 aa12.69□□□□□ -0.38
CLK3-221ENST00000568139 AMBPP02760 352 aa12.69□□□□□ -0.38
CLK3-221ENST00000568139 CRYBB3P26998 211 aa12.69□□□□□ -0.38
CLK3-221ENST00000568139 UBE2NLQ5JXB2 153 aa12.69□□□□□ -0.38
CLK3-221ENST00000568139 TMEM69Q5SWH9 247 aa12.69□□□□□ -0.38
CLK3-221ENST00000568139 POM121L12Q8N7R1 296 aa12.69□□□□□ -0.38
CLK3-221ENST00000568139 STXBP6Q8NFX7 210 aa12.69□□□□□ -0.38
CLK3-221ENST00000568139 DCANP1Q8TF63 244 aa12.69□□□□□ -0.38
CLK3-221ENST00000568139 TBC1D24Q9ULP9 559 aa12.69□□□□□ -0.38
CLK3-221ENST00000568139 CELA1Q9UNI1 258 aa12.69□□□□□ -0.38
CLK3-221ENST00000568139 DEFB131BA0A096LNP1 70 aa12.68□□□□□ -0.38
CLK3-221ENST00000568139 PRSS29PA6NIE9 313 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms