RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 SLC35E1Q96K37 410 aa16.31■□□□□ 0.2
CLN3-230ENST00000568076 TXNDC17Q9BRA2 123 aa16.31■□□□□ 0.2
CLN3-230ENST00000568076 INSIG2Q9Y5U4 225 aa16.31■□□□□ 0.2
CLN3-230ENST00000568076 ITPR1Q14643 2758 aa16.3■□□□□ 0.2
CLN3-230ENST00000568076 SCO2A0A1W2PP80 73 aa16.3■□□□□ 0.2
CLN3-230ENST00000568076 AP4M1O00189 453 aa16.3■□□□□ 0.2
CLN3-230ENST00000568076 TRGC2P03986 189 aa16.3■□□□□ 0.2
CLN3-230ENST00000568076 REG1AP05451 166 aa16.3■□□□□ 0.2
CLN3-230ENST00000568076 LINC01551Q86U37 167 aa16.3■□□□□ 0.2
CLN3-230ENST00000568076 TEX45Q8NA69 505 aa16.3■□□□□ 0.2
CLN3-230ENST00000568076 NECAP1Q8NC96 275 aa16.3■□□□□ 0.2
CLN3-230ENST00000568076 ACY3Q96HD9 319 aa16.3■□□□□ 0.2
CLN3-230ENST00000568076 DOK5Q9P104 306 aa16.3■□□□□ 0.2
CLN3-230ENST00000568076 TRBV20OR9-2A0A075B6H5 130 aa16.29■□□□□ 0.2
CLN3-230ENST00000568076 CLN5O75503 358 aa16.29■□□□□ 0.2
CLN3-230ENST00000568076 ZNF114Q8NC26 417 aa16.29■□□□□ 0.2
CLN3-230ENST00000568076 OR5T1Q8NG75 326 aa16.29■□□□□ 0.2
CLN3-230ENST00000568076 RNASEH2CQ8TDP1 164 aaKnown RBP16.29■□□□□ 0.2
CLN3-230ENST00000568076 ZNF503Q96F45 646 aa16.29■□□□□ 0.2
CLN3-230ENST00000568076 ONECUT1Q9UBC0 465 aa16.29■□□□□ 0.2
CLN3-230ENST00000568076 A0A1W2PPR1 153 aa16.29■□□□□ 0.2
CLN3-230ENST00000568076 ZNF98A6NK75 572 aa16.29■□□□□ 0.2
CLN3-230ENST00000568076 H7BYZ3 331 aa16.29■□□□□ 0.2
CLN3-230ENST00000568076 PRSS8Q16651 343 aa16.29■□□□□ 0.2
CLN3-230ENST00000568076 ELOVL1Q9BW60 279 aa16.29■□□□□ 0.2
CLN3-230ENST00000568076 AURKAIP1Q9NWT8 199 aaPredicted RBP16.29■□□□□ 0.2
CLN3-230ENST00000568076 NAV3Q8IVL0 2385 aa16.29■□□□□ 0.2
CLN3-230ENST00000568076 IGLC7A0M8Q6 106 aa16.28■□□□□ 0.2
CLN3-230ENST00000568076 PGPEP1LA6NFU8 196 aa16.28■□□□□ 0.2
CLN3-230ENST00000568076 LY6LH3BQJ8 138 aa16.28■□□□□ 0.2
CLN3-230ENST00000568076 IGHV3-48P01763 117 aa16.28■□□□□ 0.2
CLN3-230ENST00000568076 OR5G3P0C626 314 aa16.28■□□□□ 0.2
CLN3-230ENST00000568076 PSG5Q15238 335 aa16.28■□□□□ 0.2
CLN3-230ENST00000568076 LDLRAD2Q5SZI1 272 aa16.28■□□□□ 0.2
CLN3-230ENST00000568076 PNKDQ8N490 385 aa16.28■□□□□ 0.2
CLN3-230ENST00000568076 TMEM37Q8WXS4 190 aa16.28■□□□□ 0.2
CLN3-230ENST00000568076 MRPL36Q9P0J6 103 aaKnown RBP16.28■□□□□ 0.2
CLN3-230ENST00000568076 TACC2O95359 2948 aa16.28■□□□□ 0.2
CLN3-230ENST00000568076 PSMB11A5LHX3 300 aa16.27■□□□□ 0.2
CLN3-230ENST00000568076 LIPFP07098 398 aa16.27■□□□□ 0.2
CLN3-230ENST00000568076 SIGLEC9Q9Y336 463 aa16.27■□□□□ 0.2
CLN3-230ENST00000568076 PHOX2AO14813 284 aa16.27■□□□□ 0.19
CLN3-230ENST00000568076 PLXNB1O43157 2135 aa16.27■□□□□ 0.19
CLN3-230ENST00000568076 MT-CO2P00403 227 aa16.27■□□□□ 0.19
CLN3-230ENST00000568076 GALR1P47211 349 aa16.27■□□□□ 0.19
CLN3-230ENST00000568076 SUB1P53999 127 aaKnown RBP eCLIP16.27■□□□□ 0.19
CLN3-230ENST00000568076 ANAPC16Q96DE5 110 aa16.27■□□□□ 0.19
CLN3-230ENST00000568076 C12orf57Q99622 126 aa16.27■□□□□ 0.19
CLN3-230ENST00000568076 PYGO2Q9BRQ0 406 aa16.27■□□□□ 0.19
CLN3-230ENST00000568076 IGKV1D-37A0A075B6S9 117 aa16.26■□□□□ 0.19
CLN3-230ENST00000568076 HIST1H2BKO60814 126 aa16.26■□□□□ 0.19
CLN3-230ENST00000568076 HIST1H2BJP06899 126 aa16.26■□□□□ 0.19
CLN3-230ENST00000568076 HIST1H2BOP23527 126 aa16.26■□□□□ 0.19
CLN3-230ENST00000568076 HIST1H2BBP33778 126 aa16.26■□□□□ 0.19
CLN3-230ENST00000568076 HIST1H2BDP58876 126 aa16.26■□□□□ 0.19
CLN3-230ENST00000568076 HIST1H2BCP62807 126 aa16.26■□□□□ 0.19
CLN3-230ENST00000568076 TNXAQ16473 311 aa16.26■□□□□ 0.19
CLN3-230ENST00000568076 HIST2H2BEQ16778 126 aa16.26■□□□□ 0.19
CLN3-230ENST00000568076 HIST2H2BFQ5QNW6 126 aaPredicted RBP16.26■□□□□ 0.19
CLN3-230ENST00000568076 UNQ6494/PRO21346Q6UXR6 183 aa16.26■□□□□ 0.19
CLN3-230ENST00000568076 C19orf35Q6ZS72 473 aa16.26■□□□□ 0.19
CLN3-230ENST00000568076 MMD2Q8IY49 270 aa16.26■□□□□ 0.19
CLN3-230ENST00000568076 NPIPB3Q92617 1050 aa16.26■□□□□ 0.19
CLN3-230ENST00000568076 HIST1H2BHQ93079 126 aa16.26■□□□□ 0.19
CLN3-230ENST00000568076 RPEQ96AT9 228 aa16.26■□□□□ 0.19
CLN3-230ENST00000568076 TIMD4Q96H15 378 aa16.26■□□□□ 0.19
CLN3-230ENST00000568076 HIST1H2BNQ99877 126 aa16.26■□□□□ 0.19
CLN3-230ENST00000568076 HIST1H2BMQ99879 126 aa16.26■□□□□ 0.19
CLN3-230ENST00000568076 AREGP15514 252 aa16.26■□□□□ 0.19
CLN3-230ENST00000568076 MFAP2P55001 183 aa16.26■□□□□ 0.19
CLN3-230ENST00000568076 RUSC1-AS1Q66K80 236 aa16.26■□□□□ 0.19
CLN3-230ENST00000568076 DTX2Q86UW9 622 aa16.26■□□□□ 0.19
CLN3-230ENST00000568076 NEU4Q8WWR8 484 aaPredicted RBP16.26■□□□□ 0.19
CLN3-230ENST00000568076 C19orf24Q9BVV8 132 aa16.26■□□□□ 0.19
CLN3-230ENST00000568076 TECRQ9NZ01 308 aaKnown RBP16.26■□□□□ 0.19
CLN3-230ENST00000568076 RPL27AP46776 148 aaKnown RBP16.25■□□□□ 0.19
CLN3-230ENST00000568076 MEOX2P50222 304 aa16.25■□□□□ 0.19
CLN3-230ENST00000568076 ARF6P62330 175 aa16.25■□□□□ 0.19
CLN3-230ENST00000568076 MORN5Q5VZ52 161 aa16.25■□□□□ 0.19
CLN3-230ENST00000568076 PVRIGQ6DKI7 326 aa16.25■□□□□ 0.19
CLN3-230ENST00000568076 HCP5Q6MZN7 132 aa16.25■□□□□ 0.19
CLN3-230ENST00000568076 FRZBQ92765 325 aa16.25■□□□□ 0.19
CLN3-230ENST00000568076 AMMECR1Q9Y4X0 333 aaPredicted RBP16.25■□□□□ 0.19
CLN3-230ENST00000568076 APELAP0DMC3 54 aa16.24■□□□□ 0.19
CLN3-230ENST00000568076 COMPP49747 757 aaPredicted RBP16.24■□□□□ 0.19
CLN3-230ENST00000568076 ZNF90Q03938 601 aa16.24■□□□□ 0.19
CLN3-230ENST00000568076 C11orf52Q96A22 123 aa16.24■□□□□ 0.19
CLN3-230ENST00000568076 SLC25A33Q9BSK2 321 aa16.24■□□□□ 0.19
CLN3-230ENST00000568076 SFTPCP11686 197 aa16.24■□□□□ 0.19
CLN3-230ENST00000568076 NDUFA6P56556 154 aa16.24■□□□□ 0.19
CLN3-230ENST00000568076 CLEC12BQ2HXU8 276 aa16.24■□□□□ 0.19
CLN3-230ENST00000568076 PPP1R27Q86WC6 154 aa16.24■□□□□ 0.19
CLN3-230ENST00000568076 THAP8Q8NA92 274 aa16.24■□□□□ 0.19
CLN3-230ENST00000568076 OR5B12Q96R08 314 aa16.24■□□□□ 0.19
CLN3-230ENST00000568076 CHODLQ9H9P2 273 aa16.24■□□□□ 0.19
CLN3-230ENST00000568076 PQLC2Q6ZP29 291 aa16.23■□□□□ 0.19
CLN3-230ENST00000568076 FBXL15Q9H469 300 aa16.23■□□□□ 0.19
CLN3-230ENST00000568076 TMEM167BQ9NRX6 74 aa16.23■□□□□ 0.19
CLN3-230ENST00000568076 ARL2-SNX15V9GYD0 113 aa16.23■□□□□ 0.19
CLN3-230ENST00000568076 HIVEP3Q5T1R4 2406 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms