RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 GGNBP1Q5YKI7 109 aa7□□□□□ -1.29
VPS35-206ENST00000565228 LGI3Q8N145 548 aa7□□□□□ -1.29
VPS35-206ENST00000565228 OR1P1Q8NH06 330 aa7□□□□□ -1.29
VPS35-206ENST00000565228 OR52E5Q8NH55 327 aa7□□□□□ -1.29
VPS35-206ENST00000565228 CACNG8Q8WXS5 425 aa7□□□□□ -1.29
VPS35-206ENST00000565228 DPF1Q92782 380 aa7□□□□□ -1.29
VPS35-206ENST00000565228 WDR89Q96FK6 387 aaPredicted RBP7□□□□□ -1.29
VPS35-206ENST00000565228 SCGB3A2Q96PL1 93 aa7□□□□□ -1.29
VPS35-206ENST00000565228 PRR25Q96S07 402 aa7□□□□□ -1.29
VPS35-206ENST00000565228 C7orf50Q9BRJ6 194 aaKnown RBP7□□□□□ -1.29
VPS35-206ENST00000565228 RBKSQ9H477 322 aa7□□□□□ -1.29
VPS35-206ENST00000565228 CTNNBIP1Q9NSA3 81 aaPredicted RBP7□□□□□ -1.29
VPS35-206ENST00000565228 FKBP11Q9NYL4 201 aa7□□□□□ -1.29
VPS35-206ENST00000565228 BIRC6Q9NR09 4857 aa7□□□□□ -1.29
VPS35-206ENST00000565228 EPPK1P58107 5090 aaKnown RBP6.99□□□□□ -1.29
VPS35-206ENST00000565228 IGHV3OR16-8A0A075B7F1 116 aa6.99□□□□□ -1.29
VPS35-206ENST00000565228 OR2T8A6NH00 312 aa6.99□□□□□ -1.29
VPS35-206ENST00000565228 TMEM50AO95807 157 aa6.99□□□□□ -1.29
VPS35-206ENST00000565228 IFNA17P01571 189 aa6.99□□□□□ -1.29
VPS35-206ENST00000565228 DEFA4P12838 97 aa6.99□□□□□ -1.29
VPS35-206ENST00000565228 INPP1P49441 399 aa6.99□□□□□ -1.29
VPS35-206ENST00000565228 SPCS3P61009 180 aa6.99□□□□□ -1.29
VPS35-206ENST00000565228 SMCO1Q147U7 214 aa6.99□□□□□ -1.29
VPS35-206ENST00000565228 THOC7Q6I9Y2 204 aaKnown RBP6.99□□□□□ -1.29
VPS35-206ENST00000565228 LYG2Q86SG7 212 aa6.99□□□□□ -1.29
VPS35-206ENST00000565228 OR9G4Q8NGQ1 327 aa6.99□□□□□ -1.29
VPS35-206ENST00000565228 S100ZQ8WXG8 99 aa6.99□□□□□ -1.29
VPS35-206ENST00000565228 RRNAD1Q96FB5 475 aaKnown RBP6.99□□□□□ -1.29
VPS35-206ENST00000565228 MISP3Q96FF7 219 aa6.99□□□□□ -1.29
VPS35-206ENST00000565228 OR10C1Q96KK4 312 aa6.99□□□□□ -1.29
VPS35-206ENST00000565228 ZNF436Q9C0F3 470 aaPredicted RBP6.99□□□□□ -1.29
VPS35-206ENST00000565228 PLEKHA3Q9HB20 300 aa6.99□□□□□ -1.29
VPS35-206ENST00000565228 NUDT15Q9NV35 164 aa6.99□□□□□ -1.29
VPS35-206ENST00000565228 HSPB7Q9UBY9 170 aa6.99□□□□□ -1.29
VPS35-206ENST00000565228 KCNIP3Q9Y2W7 256 aa6.99□□□□□ -1.29
VPS35-206ENST00000565228 TMEM213A2RRL7 107 aa6.98□□□□□ -1.29
VPS35-206ENST00000565228 CCSO14618 274 aa6.98□□□□□ -1.29
VPS35-206ENST00000565228 IGLV1-51P01701 117 aa6.98□□□□□ -1.29
VPS35-206ENST00000565228 CTSGP08311 255 aa6.98□□□□□ -1.29
VPS35-206ENST00000565228 SULT1A3P0DMM9 295 aa6.98□□□□□ -1.29
VPS35-206ENST00000565228 SULT1A4P0DMN0 295 aa6.98□□□□□ -1.29
VPS35-206ENST00000565228 HIST1H1BP16401 226 aaKnown RBP6.98□□□□□ -1.29
VPS35-206ENST00000565228 ARL3P36405 182 aa6.98□□□□□ -1.29
VPS35-206ENST00000565228 PRR20EP86478 221 aa6.98□□□□□ -1.29
VPS35-206ENST00000565228 PRR20CP86479 221 aa6.98□□□□□ -1.29
VPS35-206ENST00000565228 PRR20DP86480 221 aa6.98□□□□□ -1.29
VPS35-206ENST00000565228 PRR20BP86481 221 aa6.98□□□□□ -1.29
VPS35-206ENST00000565228 PRR20AP86496 221 aa6.98□□□□□ -1.29
VPS35-206ENST00000565228 TNFRSF9Q07011 255 aa6.98□□□□□ -1.29
VPS35-206ENST00000565228 TM4SF20Q53R12 229 aa6.98□□□□□ -1.29
VPS35-206ENST00000565228 C9orf66Q5T8R8 295 aa6.98□□□□□ -1.29
VPS35-206ENST00000565228 HSD17B13Q7Z5P4 300 aaPredicted RBP6.98□□□□□ -1.29
VPS35-206ENST00000565228 NRARPQ7Z6K4 114 aa6.98□□□□□ -1.29
VPS35-206ENST00000565228 OR4D5Q8NGN0 318 aa6.98□□□□□ -1.29
VPS35-206ENST00000565228 VN1R17PQ8TDU5 208 aa6.98□□□□□ -1.29
VPS35-206ENST00000565228 EEF1AKMT3Q96AZ1 226 aa6.98□□□□□ -1.29
VPS35-206ENST00000565228 WDR12Q9GZL7 423 aaKnown RBP6.98□□□□□ -1.29
VPS35-206ENST00000565228 MAGT1Q9H0U3 335 aa6.98□□□□□ -1.29
VPS35-206ENST00000565228 C21orf62Q9NYP8 219 aa6.98□□□□□ -1.29
VPS35-206ENST00000565228 TRBV7-1A0A0A6YYK4 115 aa6.97□□□□□ -1.29
VPS35-206ENST00000565228 A0A1B0GU03 582 aa6.97□□□□□ -1.29
VPS35-206ENST00000565228 C2orf70A6NJV1 201 aa6.97□□□□□ -1.29
VPS35-206ENST00000565228 C15orf62A8K5M9 175 aa6.97□□□□□ -1.29
VPS35-206ENST00000565228 PRSS46E5RG02 174 aa6.97□□□□□ -1.29
VPS35-206ENST00000565228 TGOLN2O43493 480 aa6.97□□□□□ -1.29
VPS35-206ENST00000565228 SAP30O75446 220 aa6.97□□□□□ -1.29
VPS35-206ENST00000565228 CCNKO75909 580 aa6.97□□□□□ -1.29
VPS35-206ENST00000565228 DUS4LO95620 317 aaKnown RBP6.97□□□□□ -1.29
VPS35-206ENST00000565228 IAPPP10997 89 aa6.97□□□□□ -1.29
VPS35-206ENST00000565228 HOXA1P49639 335 aaPredicted RBP6.97□□□□□ -1.29
VPS35-206ENST00000565228 PAX9P55771 341 aa6.97□□□□□ -1.29
VPS35-206ENST00000565228 RPEL1Q2QD12 228 aa6.97□□□□□ -1.29
VPS35-206ENST00000565228 C2orf83Q53S99 150 aa6.97□□□□□ -1.29
VPS35-206ENST00000565228 REC114Q7Z4M0 266 aa6.97□□□□□ -1.29
VPS35-206ENST00000565228 GPHB5Q86YW7 130 aa6.97□□□□□ -1.29
VPS35-206ENST00000565228 RNASE11Q8TAA1 199 aaKnown RBP6.97□□□□□ -1.29
VPS35-206ENST00000565228 MITD1Q8WV92 249 aa6.97□□□□□ -1.29
VPS35-206ENST00000565228 PINX1Q96BK5 328 aaKnown RBP6.97□□□□□ -1.29
VPS35-206ENST00000565228 OR4C12Q96R67 309 aa6.97□□□□□ -1.29
VPS35-206ENST00000565228 LSM4Q9Y4Z0 139 aaKnown RBP6.97□□□□□ -1.29
VPS35-206ENST00000565228 COL7A1Q02388 2944 aa6.96□□□□□ -1.3
VPS35-206ENST00000565228 DUXBA0A1W2PPF3 345 aa6.96□□□□□ -1.3
VPS35-206ENST00000565228 ZNF785A8K8V0 405 aa6.96□□□□□ -1.3
VPS35-206ENST00000565228 PMS2P5A8MQ11 134 aa6.96□□□□□ -1.3
VPS35-206ENST00000565228 CENPXA8MT69 81 aa6.96□□□□□ -1.3
VPS35-206ENST00000565228 ZNF207O43670 478 aaKnown RBP6.96□□□□□ -1.3
VPS35-206ENST00000565228 GGCTO75223 188 aaKnown RBP6.96□□□□□ -1.3
VPS35-206ENST00000565228 ATG12O94817 140 aa6.96□□□□□ -1.3
VPS35-206ENST00000565228 H2AFB2P0C5Z0 115 aa6.96□□□□□ -1.3
VPS35-206ENST00000565228 ANXA3P12429 323 aa6.96□□□□□ -1.3
VPS35-206ENST00000565228 ZP3P21754 424 aa6.96□□□□□ -1.3
VPS35-206ENST00000565228 FCGR2BP31994 310 aaPredicted RBP6.96□□□□□ -1.3
VPS35-206ENST00000565228 ERHP84090 104 aaKnown RBP6.96□□□□□ -1.3
VPS35-206ENST00000565228 ID3Q02535 119 aa6.96□□□□□ -1.3
VPS35-206ENST00000565228 IL15RAQ13261 267 aa6.96□□□□□ -1.3
VPS35-206ENST00000565228 C4orf46Q504U0 113 aa6.96□□□□□ -1.3
VPS35-206ENST00000565228 Q8N1Y9 231 aa6.96□□□□□ -1.3
VPS35-206ENST00000565228 LILRB2Q8N423 598 aa6.96□□□□□ -1.3
VPS35-206ENST00000565228 DUSP18Q8NEJ0 188 aa6.96□□□□□ -1.3
VPS35-206ENST00000565228 CXorf58Q96LI9 332 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms