RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 SPCS3P61009 180 aa10.17□□□□□ -0.78
CLK3-213ENST00000563842 TMEM187Q14656 261 aa10.17□□□□□ -0.78
CLK3-213ENST00000563842 Q56UQ5 140 aa10.17□□□□□ -0.78
CLK3-213ENST00000563842 GTSCR1Q86UQ5 136 aa10.17□□□□□ -0.78
CLK3-213ENST00000563842 LGI3Q8N145 548 aa10.17□□□□□ -0.78
CLK3-213ENST00000563842 LHFPL5Q8TAF8 219 aa10.17□□□□□ -0.78
CLK3-213ENST00000563842 TMEM230Q96A57 120 aa10.17□□□□□ -0.78
CLK3-213ENST00000563842 ZNF436Q9C0F3 470 aaPredicted RBP10.17□□□□□ -0.78
CLK3-213ENST00000563842 IGHV3-21A0A0B4J1V1 117 aa10.16□□□□□ -0.78
CLK3-213ENST00000563842 CENPXA8MT69 81 aa10.16□□□□□ -0.78
CLK3-213ENST00000563842 NUPL2O15504 423 aaKnown RBP10.16□□□□□ -0.78
CLK3-213ENST00000563842 CBLN1P23435 193 aa10.16□□□□□ -0.78
CLK3-213ENST00000563842 FCGR2BP31994 310 aaPredicted RBP10.16□□□□□ -0.78
CLK3-213ENST00000563842 RELQ04864 619 aaPredicted RBP10.16□□□□□ -0.78
CLK3-213ENST00000563842 AARDQ4LEZ3 155 aa10.16□□□□□ -0.78
CLK3-213ENST00000563842 TMEM128Q5BJH2 165 aa10.16□□□□□ -0.78
CLK3-213ENST00000563842 SPINK9Q5DT21 86 aa10.16□□□□□ -0.78
CLK3-213ENST00000563842 UBAC2Q8NBM4 344 aa10.16□□□□□ -0.78
CLK3-213ENST00000563842 ZC4H2Q9NQZ6 224 aa10.16□□□□□ -0.78
CLK3-213ENST00000563842 MRPL27Q9P0M9 148 aaKnown RBP10.16□□□□□ -0.78
CLK3-213ENST00000563842 CACNG5Q9UF02 275 aa10.16□□□□□ -0.78
CLK3-213ENST00000563842 KMT2CQ8NEZ4 4911 aaKnown RBP10.15□□□□□ -0.78
CLK3-213ENST00000563842 A0A0B4J2A0 478 aa10.15□□□□□ -0.78
CLK3-213ENST00000563842 A0A0G2JRQ6 117 aa10.15□□□□□ -0.78
CLK3-213ENST00000563842 DUXBA0A1W2PPF3 345 aa10.15□□□□□ -0.78
CLK3-213ENST00000563842 I3L2K1 104 aa10.15□□□□□ -0.78
CLK3-213ENST00000563842 NDUFA4O00483 81 aa10.15□□□□□ -0.78
CLK3-213ENST00000563842 MT-CO2P00403 227 aa10.15□□□□□ -0.78
CLK3-213ENST00000563842 SULT1A3P0DMM9 295 aa10.15□□□□□ -0.78
CLK3-213ENST00000563842 SULT1A4P0DMN0 295 aa10.15□□□□□ -0.78
CLK3-213ENST00000563842 NPBWR1P48145 328 aa10.15□□□□□ -0.78
CLK3-213ENST00000563842 RBMS2Q15434 407 aaKnown RBP10.15□□□□□ -0.78
CLK3-213ENST00000563842 DEFB114Q30KQ6 69 aa10.15□□□□□ -0.78
CLK3-213ENST00000563842 CD300EQ496F6 205 aaPredicted RBP10.15□□□□□ -0.78
CLK3-213ENST00000563842 Q6ZRM9 215 aa10.15□□□□□ -0.78
CLK3-213ENST00000563842 TMED4Q7Z7H5 227 aa10.15□□□□□ -0.78
CLK3-213ENST00000563842 DUSP18Q8NEJ0 188 aa10.15□□□□□ -0.78
CLK3-213ENST00000563842 PINX1Q96BK5 328 aaKnown RBP10.15□□□□□ -0.78
CLK3-213ENST00000563842 GPR146Q96CH1 333 aa10.15□□□□□ -0.78
CLK3-213ENST00000563842 SHPKQ9UHJ6 478 aa10.15□□□□□ -0.78
CLK3-213ENST00000563842 TMEM213A2RRL7 107 aa10.14□□□□□ -0.79
CLK3-213ENST00000563842 GNG7O60262 68 aa10.14□□□□□ -0.79
CLK3-213ENST00000563842 SCGB2A1O75556 95 aa10.14□□□□□ -0.79
CLK3-213ENST00000563842 HTR2BP41595 481 aa10.14□□□□□ -0.79
CLK3-213ENST00000563842 CCR6P51684 374 aa10.14□□□□□ -0.79
CLK3-213ENST00000563842 SUPT4H1P63272 117 aaKnown RBP10.14□□□□□ -0.79
CLK3-213ENST00000563842 ADAMTSL5Q6ZMM2 481 aa10.14□□□□□ -0.79
CLK3-213ENST00000563842 NOXA1Q86UR1 476 aa10.14□□□□□ -0.79
CLK3-213ENST00000563842 CENPSQ8N2Z9 138 aa10.14□□□□□ -0.79
CLK3-213ENST00000563842 UXS1Q8NBZ7 420 aa10.14□□□□□ -0.79
CLK3-213ENST00000563842 TMEM190Q8WZ59 177 aa10.14□□□□□ -0.79
CLK3-213ENST00000563842 C7orf50Q9BRJ6 194 aaKnown RBP10.14□□□□□ -0.79
CLK3-213ENST00000563842 HIPK2Q9H2X6 1198 aa10.14□□□□□ -0.79
CLK3-213ENST00000563842 HEYLQ9NQ87 328 aaPredicted RBP10.14□□□□□ -0.79
CLK3-213ENST00000563842 IGHV3-35A0A0C4DH35 117 aa10.13□□□□□ -0.79
CLK3-213ENST00000563842 CEBPZOSA8MTT3 80 aa10.13□□□□□ -0.79
CLK3-213ENST00000563842 A8MZ25 164 aa10.13□□□□□ -0.79
CLK3-213ENST00000563842 K7EMT4 169 aa10.13□□□□□ -0.79
CLK3-213ENST00000563842 CTSGP08311 255 aa10.13□□□□□ -0.79
CLK3-213ENST00000563842 C8orf88P0DMB2 117 aa10.13□□□□□ -0.79
CLK3-213ENST00000563842 RNASE2P10153 161 aaKnown RBP10.13□□□□□ -0.79
CLK3-213ENST00000563842 VAMP1P23763 118 aa10.13□□□□□ -0.79
CLK3-213ENST00000563842 UBE2MP61081 183 aaKnown RBP10.13□□□□□ -0.79
CLK3-213ENST00000563842 SMCO1Q147U7 214 aa10.13□□□□□ -0.79
CLK3-213ENST00000563842 BAK1Q16611 211 aa10.13□□□□□ -0.79
CLK3-213ENST00000563842 TM4SF20Q53R12 229 aa10.13□□□□□ -0.79
CLK3-213ENST00000563842 UNQ9165/PRO28630Q6UXU0 137 aa10.13□□□□□ -0.79
CLK3-213ENST00000563842 Q8N1Y9 231 aa10.13□□□□□ -0.79
CLK3-213ENST00000563842 CHRDL1Q9BU40 450 aa10.13□□□□□ -0.79
CLK3-213ENST00000563842 DAZ1Q9NQZ3 744 aaKnown RBP10.13□□□□□ -0.79
CLK3-213ENST00000563842 COL7A1Q02388 2944 aa10.12□□□□□ -0.79
CLK3-213ENST00000563842 TRAV25A0A0B4J276 109 aa10.12□□□□□ -0.79
CLK3-213ENST00000563842 A0A1B0GU03 582 aa10.12□□□□□ -0.79
CLK3-213ENST00000563842 RPS10-NUDT3A0A1W2PQS6 291 aa10.12□□□□□ -0.79
CLK3-213ENST00000563842 IZUMO1RA6ND01 250 aa10.12□□□□□ -0.79
CLK3-213ENST00000563842 F8W735 103 aaPredicted RBP10.12□□□□□ -0.79
CLK3-213ENST00000563842 FRMD6-AS1P0C7T7 363 aa10.12□□□□□ -0.79
CLK3-213ENST00000563842 GUCA2BQ16661 112 aa10.12□□□□□ -0.79
CLK3-213ENST00000563842 CNPY1Q3B7I2 92 aa10.12□□□□□ -0.79
CLK3-213ENST00000563842 ANKRD55Q3KP44 614 aa10.12□□□□□ -0.79
CLK3-213ENST00000563842 NMSQ5H8A3 153 aa10.12□□□□□ -0.79
CLK3-213ENST00000563842 PVRIGQ6DKI7 326 aa10.12□□□□□ -0.79
CLK3-213ENST00000563842 LINC00299Q6ZSB3 139 aa10.12□□□□□ -0.79
CLK3-213ENST00000563842 LYZL2Q7Z4W2 148 aa10.12□□□□□ -0.79
CLK3-213ENST00000563842 C20orf24Q9BUV8 137 aa10.12□□□□□ -0.79
CLK3-213ENST00000563842 C15orf62A8K5M9 175 aa10.11□□□□□ -0.79
CLK3-213ENST00000563842 ZNF785A8K8V0 405 aa10.11□□□□□ -0.79
CLK3-213ENST00000563842 SFT2D2O95562 160 aa10.11□□□□□ -0.79
CLK3-213ENST00000563842 IGHV4-30-4P0DP06 118 aa10.11□□□□□ -0.79
CLK3-213ENST00000563842 ADMP35318 185 aa10.11□□□□□ -0.79
CLK3-213ENST00000563842 OPRK1P41145 380 aa10.11□□□□□ -0.79
CLK3-213ENST00000563842 BSXQ3C1V8 233 aa10.11□□□□□ -0.79
CLK3-213ENST00000563842 C2orf83Q53S99 150 aa10.11□□□□□ -0.79
CLK3-213ENST00000563842 LAMTOR1Q6IAA8 161 aa10.11□□□□□ -0.79
CLK3-213ENST00000563842 RBPMS2Q6ZRY4 209 aaKnown RBP10.11□□□□□ -0.79
CLK3-213ENST00000563842 SLC16A13Q7RTY0 426 aa10.11□□□□□ -0.79
CLK3-213ENST00000563842 LRTM2Q8N967 370 aa10.11□□□□□ -0.79
CLK3-213ENST00000563842 SLC24A4Q8NFF2 622 aa10.11□□□□□ -0.79
CLK3-213ENST00000563842 OR1S1Q8NH92 325 aa10.11□□□□□ -0.79
CLK3-213ENST00000563842 RNASEH2CQ8TDP1 164 aaKnown RBP10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms