RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 MYOD1P15172 320 aa7.14□□□□□ -1.27
VPS39-207ENST00000563692 EBI3Q14213 229 aa7.14□□□□□ -1.27
VPS39-207ENST00000563692 PEA15Q15121 130 aa7.14□□□□□ -1.27
VPS39-207ENST00000563692 MMDQ15546 238 aa7.14□□□□□ -1.27
VPS39-207ENST00000563692 TMEM41BQ5BJD5 291 aa7.14□□□□□ -1.27
VPS39-207ENST00000563692 ETFRF1Q6IPR1 90 aa7.14□□□□□ -1.27
VPS39-207ENST00000563692 TEPPQ6URK8 271 aa7.14□□□□□ -1.27
VPS39-207ENST00000563692 LYPD6BQ8NI32 183 aa7.14□□□□□ -1.27
VPS39-207ENST00000563692 RNASEH2CQ8TDP1 164 aaKnown RBP7.14□□□□□ -1.27
VPS39-207ENST00000563692 CACNG8Q8WXS5 425 aa7.14□□□□□ -1.27
VPS39-207ENST00000563692 CFHR4Q92496 578 aa7.14□□□□□ -1.27
VPS39-207ENST00000563692 EAF1Q96JC9 268 aaPredicted RBP7.14□□□□□ -1.27
VPS39-207ENST00000563692 SRSF8Q9BRL6 282 aaKnown RBP7.14□□□□□ -1.27
VPS39-207ENST00000563692 RSG1Q9BU20 258 aa7.14□□□□□ -1.27
VPS39-207ENST00000563692 PBDC1Q9BVG4 233 aa7.14□□□□□ -1.27
VPS39-207ENST00000563692 WDR83OSQ9Y284 106 aa7.14□□□□□ -1.27
VPS39-207ENST00000563692 SVEP1Q4LDE5 3571 aa7.14□□□□□ -1.27
VPS39-207ENST00000563692 MXRA5Q9NR99 2828 aa7.14□□□□□ -1.27
VPS39-207ENST00000563692 CENPVL3A0A0U1RRI6 287 aa7.13□□□□□ -1.27
VPS39-207ENST00000563692 NCBP2LA6PVI3 153 aaKnown RBP7.13□□□□□ -1.27
VPS39-207ENST00000563692 CORTO00230 105 aa7.13□□□□□ -1.27
VPS39-207ENST00000563692 AVPP01185 164 aa7.13□□□□□ -1.27
VPS39-207ENST00000563692 RNASE2P10153 161 aaKnown RBP7.13□□□□□ -1.27
VPS39-207ENST00000563692 MDKP21741 143 aaPredicted RBP7.13□□□□□ -1.27
VPS39-207ENST00000563692 HILS1P60008 231 aa7.13□□□□□ -1.27
VPS39-207ENST00000563692 GNB1P62873 340 aa7.13□□□□□ -1.27
VPS39-207ENST00000563692 HNF4GQ14541 408 aa7.13□□□□□ -1.27
VPS39-207ENST00000563692 TUSC1Q2TAM9 212 aa7.13□□□□□ -1.27
VPS39-207ENST00000563692 BSXQ3C1V8 233 aa7.13□□□□□ -1.27
VPS39-207ENST00000563692 ACOT6Q3I5F7 207 aaPredicted RBP7.13□□□□□ -1.27
VPS39-207ENST00000563692 LDLRAD2Q5SZI1 272 aa7.13□□□□□ -1.27
VPS39-207ENST00000563692 C12orf54Q6X4T0 127 aa7.13□□□□□ -1.27
VPS39-207ENST00000563692 OR10W1Q8NGF6 305 aa7.13□□□□□ -1.27
VPS39-207ENST00000563692 OR1L6Q8NGR2 347 aa7.13□□□□□ -1.27
VPS39-207ENST00000563692 SFT2D1Q8WV19 159 aa7.13□□□□□ -1.27
VPS39-207ENST00000563692 RBMXL1Q96E39 390 aaKnown RBP7.13□□□□□ -1.27
VPS39-207ENST00000563692 NPCDR1Q9BY65 106 aa7.13□□□□□ -1.27
VPS39-207ENST00000563692 FBXL15Q9H469 300 aa7.13□□□□□ -1.27
VPS39-207ENST00000563692 SMDT1Q9H4I9 107 aa7.13□□□□□ -1.27
VPS39-207ENST00000563692 TREM1Q9NP99 234 aa7.13□□□□□ -1.27
VPS39-207ENST00000563692 DOCK11Q5JSL3 2073 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 IGHV1-69DA0A0B4J2H0 117 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 PRSS46E5RG02 174 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 NDUFA3O95167 84 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 IGHV1-69P01742 117 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 TMEM11P17152 192 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 ZP3P21754 424 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 CNTFRP26992 372 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 SAA4P35542 130 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 OPRK1P41145 380 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 FHITP49789 147 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 AKR1C1Q04828 323 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 WT1-ASQ06250 92 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 CD69Q07108 199 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 TOR2AQ5JU69 321 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 FFAR4Q5NUL3 377 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 TREML4Q6UXN2 200 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 TMEM144Q7Z5S9 345 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.12□□□□□ -1.27
VPS39-207ENST00000563692 OR10G4Q8NGN3 311 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 OR10G9Q8NGN4 311 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 OR10G7Q8NGN6 311 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 TMEM170AQ8WVE7 144 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 MBD3L1Q8WWY6 194 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 NARS2Q96I59 477 aaKnown RBP7.12□□□□□ -1.27
VPS39-207ENST00000563692 SLC35E1Q96K37 410 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 ACTR3CQ9C0K3 210 aaPredicted RBP7.12□□□□□ -1.27
VPS39-207ENST00000563692 EIF5A2Q9GZV4 153 aaKnown RBP7.12□□□□□ -1.27
VPS39-207ENST00000563692 RPRMQ9NS64 109 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 SLC39A9Q9NUM3 307 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 FAM96BQ9Y3D0 163 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 CUBNO60494 3623 aa7.12□□□□□ -1.27
VPS39-207ENST00000563692 TRAV1-1A0A0B4J248 108 aa7.11□□□□□ -1.27
VPS39-207ENST00000563692 A0A1B0GW64 132 aa7.11□□□□□ -1.27
VPS39-207ENST00000563692 A0A1W2PPV4 95 aa7.11□□□□□ -1.27
VPS39-207ENST00000563692 TMEM218A2RU14 115 aa7.11□□□□□ -1.27
VPS39-207ENST00000563692 E7EUB6 86 aa7.11□□□□□ -1.27
VPS39-207ENST00000563692 AGPAT2O15120 278 aa7.11□□□□□ -1.27
VPS39-207ENST00000563692 M6PRP20645 277 aa7.11□□□□□ -1.27
VPS39-207ENST00000563692 ELLP55199 621 aaPredicted RBP7.11□□□□□ -1.27
VPS39-207ENST00000563692 GUK1Q16774 197 aa7.11□□□□□ -1.27
VPS39-207ENST00000563692 C5orf64Q2M2E5 130 aa7.11□□□□□ -1.27
VPS39-207ENST00000563692 MRGPRG-AS1Q2M3A8 158 aa7.11□□□□□ -1.27
VPS39-207ENST00000563692 ZNF562Q6V9R5 426 aa7.11□□□□□ -1.27
VPS39-207ENST00000563692 ZNF114Q8NC26 417 aa7.11□□□□□ -1.27
VPS39-207ENST00000563692 BPIFCQ8NFQ6 507 aa7.11□□□□□ -1.27
VPS39-207ENST00000563692 OR1P1Q8NH06 330 aa7.11□□□□□ -1.27
VPS39-207ENST00000563692 ABHD5Q8WTS1 349 aa7.11□□□□□ -1.27
VPS39-207ENST00000563692 SRSF12Q8WXF0 261 aaKnown RBP7.11□□□□□ -1.27
VPS39-207ENST00000563692 C22orf15Q8WYQ4 148 aa7.11□□□□□ -1.27
VPS39-207ENST00000563692 P2RX4Q99571 388 aa7.11□□□□□ -1.27
VPS39-207ENST00000563692 RASL11BQ9BPW5 248 aa7.11□□□□□ -1.27
VPS39-207ENST00000563692 TPSG1Q9NRR2 321 aa7.11□□□□□ -1.27
VPS39-207ENST00000563692 RFNGQ9Y644 331 aa7.11□□□□□ -1.27
VPS39-207ENST00000563692 DNHD1Q96M86 4753 aa7.11□□□□□ -1.27
VPS39-207ENST00000563692 IGLC7A0M8Q6 106 aa7.1□□□□□ -1.27
VPS39-207ENST00000563692 CGB1A6NKQ9 187 aa7.1□□□□□ -1.27
VPS39-207ENST00000563692 FCN1O00602 326 aa7.1□□□□□ -1.27
VPS39-207ENST00000563692 IFNA1P01562 189 aa7.1□□□□□ -1.27
VPS39-207ENST00000563692 DEFA4P12838 97 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms