RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 HOXA3O43365 443 aaPredicted RBP10.98□□□□□ -0.65
CLK3-209ENST00000562670 MPDU1O75352 247 aa10.98□□□□□ -0.65
CLK3-209ENST00000562670 BRI3O95415 125 aa10.98□□□□□ -0.65
CLK3-209ENST00000562670 CFDP00746 253 aaPredicted RBP10.98□□□□□ -0.65
CLK3-209ENST00000562670 SEC11BP0C7V7 166 aa10.98□□□□□ -0.65
CLK3-209ENST00000562670 CD69Q07108 199 aa10.98□□□□□ -0.65
CLK3-209ENST00000562670 ETFRF1Q6IPR1 90 aa10.98□□□□□ -0.65
CLK3-209ENST00000562670 IL17RELQ6ZVW7 336 aa10.98□□□□□ -0.65
CLK3-209ENST00000562670 SIGLECL1Q8N7X8 197 aa10.98□□□□□ -0.65
CLK3-209ENST00000562670 FAM110DQ8TAY7 271 aaPredicted RBP10.98□□□□□ -0.65
CLK3-209ENST00000562670 SCARB1Q8WTV0 552 aa10.98□□□□□ -0.65
CLK3-209ENST00000562670 GNPNAT1Q96EK6 184 aaPredicted RBP10.98□□□□□ -0.65
CLK3-209ENST00000562670 WDR61Q9GZS3 305 aaKnown RBP10.98□□□□□ -0.65
CLK3-209ENST00000562670 PARP11Q9NR21 331 aa10.98□□□□□ -0.65
CLK3-209ENST00000562670 WDR83OSQ9Y284 106 aa10.98□□□□□ -0.65
CLK3-209ENST00000562670 ACANP16112 2415 aa10.98□□□□□ -0.65
CLK3-209ENST00000562670 MXRA5Q9NR99 2828 aa10.98□□□□□ -0.65
CLK3-209ENST00000562670 PLXNB1O43157 2135 aa10.97□□□□□ -0.65
CLK3-209ENST00000562670 UBE2L5PA0A1B0GUS4 154 aa10.97□□□□□ -0.65
CLK3-209ENST00000562670 RPS10-NUDT3A0A1W2PQS6 291 aa10.97□□□□□ -0.65
CLK3-209ENST00000562670 SOX15O60248 233 aa10.97□□□□□ -0.65
CLK3-209ENST00000562670 REG1AP05451 166 aa10.97□□□□□ -0.65
CLK3-209ENST00000562670 SPP1P10451 314 aa10.97□□□□□ -0.65
CLK3-209ENST00000562670 MFAP2P55001 183 aa10.97□□□□□ -0.65
CLK3-209ENST00000562670 RPL15P61313 204 aaKnown RBP10.97□□□□□ -0.65
CLK3-209ENST00000562670 RBMS3Q6XE24 437 aaKnown RBP10.97□□□□□ -0.65
CLK3-209ENST00000562670 SLC35E3Q7Z769 313 aa10.97□□□□□ -0.65
CLK3-209ENST00000562670 CENPVQ7Z7K6 275 aaPredicted RBP10.97□□□□□ -0.65
CLK3-209ENST00000562670 PSMG3Q9BT73 122 aaPredicted RBP10.97□□□□□ -0.65
CLK3-209ENST00000562670 FAM103A1Q9BTL3 118 aaKnown RBP10.97□□□□□ -0.65
CLK3-209ENST00000562670 UBQLN2Q9UHD9 624 aa10.97□□□□□ -0.65
CLK3-209ENST00000562670 LSM4Q9Y4Z0 139 aaKnown RBP10.97□□□□□ -0.65
CLK3-209ENST00000562670 TIMM9Q9Y5J7 89 aa10.97□□□□□ -0.65
CLK3-209ENST00000562670 IGLV11-55A0A075B6I3 123 aa10.96□□□□□ -0.65
CLK3-209ENST00000562670 AP4M1O00189 453 aa10.96□□□□□ -0.65
CLK3-209ENST00000562670 HIST1H1BP16401 226 aaKnown RBP10.96□□□□□ -0.65
CLK3-209ENST00000562670 SRD5A1P18405 259 aa10.96□□□□□ -0.65
CLK3-209ENST00000562670 ARSJQ5FYB0 599 aaPredicted RBP10.96□□□□□ -0.65
CLK3-209ENST00000562670 SLC16A13Q7RTY0 426 aa10.96□□□□□ -0.65
CLK3-209ENST00000562670 TMEM144Q7Z5S9 345 aa10.96□□□□□ -0.65
CLK3-209ENST00000562670 LFNGQ8NES3 379 aa10.96□□□□□ -0.65
CLK3-209ENST00000562670 TAF15Q92804 592 aaKnown RBP eCLIP10.96□□□□□ -0.65
CLK3-209ENST00000562670 NPFFR1Q9GZQ6 430 aa10.96□□□□□ -0.65
CLK3-209ENST00000562670 WNT10AQ9GZT5 417 aa10.96□□□□□ -0.65
CLK3-209ENST00000562670 NPVFQ9HCQ7 196 aa10.96□□□□□ -0.65
CLK3-209ENST00000562670 DMRT1Q9Y5R6 373 aa10.96□□□□□ -0.65
CLK3-209ENST00000562670 H3BUA1 57 aa10.95□□□□□ -0.66
CLK3-209ENST00000562670 ATP6V0CP27449 155 aa10.95□□□□□ -0.66
CLK3-209ENST00000562670 OPRK1P41145 380 aa10.95□□□□□ -0.66
CLK3-209ENST00000562670 SLC25A24Q6NUK1 477 aa10.95□□□□□ -0.66
CLK3-209ENST00000562670 TREML4Q6UXN2 200 aa10.95□□□□□ -0.66
CLK3-209ENST00000562670 Q8N2B8 174 aa10.95□□□□□ -0.66
CLK3-209ENST00000562670 OR2G3Q8NGZ4 309 aa10.95□□□□□ -0.66
CLK3-209ENST00000562670 SCGB1C1Q8TD33 95 aa10.95□□□□□ -0.66
CLK3-209ENST00000562670 SLC35E1Q96K37 410 aa10.95□□□□□ -0.66
CLK3-209ENST00000562670 FANCD2OSQ96PS1 177 aa10.95□□□□□ -0.66
CLK3-209ENST00000562670 SMR3AQ99954 134 aa10.95□□□□□ -0.66
CLK3-209ENST00000562670 FNDC4Q9H6D8 234 aaPredicted RBP10.95□□□□□ -0.66
CLK3-209ENST00000562670 KCNIP2Q9NS61 270 aa10.95□□□□□ -0.66
CLK3-209ENST00000562670 THYN1Q9P016 225 aa10.95□□□□□ -0.66
CLK3-209ENST00000562670 TRAV41A0A0B4J266 112 aa10.94□□□□□ -0.66
CLK3-209ENST00000562670 I3L2K1 104 aa10.94□□□□□ -0.66
CLK3-209ENST00000562670 APELAP0DMC3 54 aa10.94□□□□□ -0.66
CLK3-209ENST00000562670 DEFA4P12838 97 aa10.94□□□□□ -0.66
CLK3-209ENST00000562670 RAB5CP51148 216 aa10.94□□□□□ -0.66
CLK3-209ENST00000562670 SERF2P84101 59 aa10.94□□□□□ -0.66
CLK3-209ENST00000562670 TEPPQ6URK8 271 aa10.94□□□□□ -0.66
CLK3-209ENST00000562670 UNQ5815/PRO19632Q6UWF5 114 aa10.94□□□□□ -0.66
CLK3-209ENST00000562670 ALKAL2Q6UX46 152 aa10.94□□□□□ -0.66
CLK3-209ENST00000562670 HSD17B11Q8NBQ5 300 aa10.94□□□□□ -0.66
CLK3-209ENST00000562670 TMEM116Q8NCL8 245 aa10.94□□□□□ -0.66
CLK3-209ENST00000562670 LRRC20Q8TCA0 184 aa10.94□□□□□ -0.66
CLK3-209ENST00000562670 TMED6Q8WW62 240 aa10.94□□□□□ -0.66
CLK3-209ENST00000562670 NPCDR1Q9BY65 106 aa10.94□□□□□ -0.66
CLK3-209ENST00000562670 PRSS22Q9GZN4 317 aa10.94□□□□□ -0.66
CLK3-209ENST00000562670 HIVEP2P31629 2446 aa10.94□□□□□ -0.66
CLK3-209ENST00000562670 ZFHX3Q15911 3703 aa10.94□□□□□ -0.66
CLK3-209ENST00000562670 SONP18583 2426 aaKnown RBP10.93□□□□□ -0.66
CLK3-209ENST00000562670 TRBV9A0A0B4J1U6 114 aa10.93□□□□□ -0.66
CLK3-209ENST00000562670 DNAJC9-AS1A6NH13 148 aa10.93□□□□□ -0.66
CLK3-209ENST00000562670 SH2D7A6NKC9 451 aaPredicted RBP10.93□□□□□ -0.66
CLK3-209ENST00000562670 UMAD1C9J7I0 102 aa10.93□□□□□ -0.66
CLK3-209ENST00000562670 K7EIM0 57 aa10.93□□□□□ -0.66
CLK3-209ENST00000562670 FGF7P21781 194 aa10.93□□□□□ -0.66
CLK3-209ENST00000562670 BLCAPP62952 87 aa10.93□□□□□ -0.66
CLK3-209ENST00000562670 CFHR3Q02985 330 aa10.93□□□□□ -0.66
CLK3-209ENST00000562670 AKR1C1Q04828 323 aa10.93□□□□□ -0.66
CLK3-209ENST00000562670 GAMTQ14353 236 aa10.93□□□□□ -0.66
CLK3-209ENST00000562670 ECSCRQ19T08 205 aa10.93□□□□□ -0.66
CLK3-209ENST00000562670 BTNL8Q6UX41 500 aa10.93□□□□□ -0.66
CLK3-209ENST00000562670 THAP8Q8NA92 274 aa10.93□□□□□ -0.66
CLK3-209ENST00000562670 MISP3Q96FF7 219 aa10.93□□□□□ -0.66
CLK3-209ENST00000562670 ATP6V0BQ99437 205 aa10.93□□□□□ -0.66
CLK3-209ENST00000562670 SLC25A32Q9H2D1 315 aa10.93□□□□□ -0.66
CLK3-209ENST00000562670 LINC01548A6NM66 108 aa10.92□□□□□ -0.66
CLK3-209ENST00000562670 C17orf112F2Z3M2 114 aa10.92□□□□□ -0.66
CLK3-209ENST00000562670 TRIM77I1YAP6 450 aa10.92□□□□□ -0.66
CLK3-209ENST00000562670 MT-CO2P00403 227 aa10.92□□□□□ -0.66
CLK3-209ENST00000562670 RNASE1P07998 156 aaKnown RBP10.92□□□□□ -0.66
CLK3-209ENST00000562670 PPIFP30405 207 aaKnown RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms