RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 RHPN1-AS1Q9BWJ2 59 aa8.58□□□□□ -1.04
USP3-220ENST00000561381 MAP6D1Q9H9H5 199 aa8.58□□□□□ -1.04
USP3-220ENST00000561381 FKBP11Q9NYL4 201 aa8.58□□□□□ -1.04
USP3-220ENST00000561381 IGHV7-4-1A0A0J9YVY3 117 aa8.57□□□□□ -1.04
USP3-220ENST00000561381 NUPL2O15504 423 aaKnown RBP8.57□□□□□ -1.04
USP3-220ENST00000561381 MT-CO2P00403 227 aa8.57□□□□□ -1.04
USP3-220ENST00000561381 TSPAN5P62079 268 aa8.57□□□□□ -1.04
USP3-220ENST00000561381 IZUMO4Q1ZYL8 232 aa8.57□□□□□ -1.04
USP3-220ENST00000561381 SPINK9Q5DT21 86 aa8.57□□□□□ -1.04
USP3-220ENST00000561381 LCE3BQ5TA77 95 aa8.57□□□□□ -1.04
USP3-220ENST00000561381 H2BFWTQ7Z2G1 175 aa8.57□□□□□ -1.04
USP3-220ENST00000561381 SNX29P2Q8IUI4 249 aa8.57□□□□□ -1.04
USP3-220ENST00000561381 GBGT1Q8N5D6 347 aa8.57□□□□□ -1.04
USP3-220ENST00000561381 TMEM116Q8NCL8 245 aa8.57□□□□□ -1.04
USP3-220ENST00000561381 MRGPRFQ96AM1 343 aa8.57□□□□□ -1.04
USP3-220ENST00000561381 GALNT14Q96FL9 552 aa8.57□□□□□ -1.04
USP3-220ENST00000561381 TSC22D3Q99576 134 aa8.57□□□□□ -1.04
USP3-220ENST00000561381 SSBP4Q9BWG4 385 aaPredicted RBP8.57□□□□□ -1.04
USP3-220ENST00000561381 COMMD3Q9UBI1 195 aa8.57□□□□□ -1.04
USP3-220ENST00000561381 MFAP4P55083 255 aa8.56□□□□□ -1.04
USP3-220ENST00000561381 NCS1P62166 190 aa8.56□□□□□ -1.04
USP3-220ENST00000561381 RELQ04864 619 aaPredicted RBP8.56□□□□□ -1.04
USP3-220ENST00000561381 PINX1Q96BK5 328 aaKnown RBP8.56□□□□□ -1.04
USP3-220ENST00000561381 OR10C1Q96KK4 312 aa8.56□□□□□ -1.04
USP3-220ENST00000561381 NXF2Q9GZY0 626 aaKnown RBP8.56□□□□□ -1.04
USP3-220ENST00000561381 M0QYG6 137 aa8.55□□□□□ -1.04
USP3-220ENST00000561381 APOHP02749 345 aaPredicted RBP8.55□□□□□ -1.04
USP3-220ENST00000561381 PRCDQ00LT1 54 aa8.55□□□□□ -1.04
USP3-220ENST00000561381 FAM90A2PQ658T7 463 aa8.55□□□□□ -1.04
USP3-220ENST00000561381 LPCAT3Q6P1A2 487 aa8.55□□□□□ -1.04
USP3-220ENST00000561381 LILRB2Q8N423 598 aa8.55□□□□□ -1.04
USP3-220ENST00000561381 ZNF114Q8NC26 417 aa8.55□□□□□ -1.04
USP3-220ENST00000561381 OR4A16Q8NH70 328 aa8.55□□□□□ -1.04
USP3-220ENST00000561381 TXN2Q99757 166 aa8.55□□□□□ -1.04
USP3-220ENST00000561381 CSTL1Q9H114 145 aa8.55□□□□□ -1.04
USP3-220ENST00000561381 FAM212BQ9NTI7 297 aaPredicted RBP8.55□□□□□ -1.04
USP3-220ENST00000561381 TRAV14DV4A0A0A6YYC5 116 aa8.54□□□□□ -1.04
USP3-220ENST00000561381 IGHV3-66A0A0C4DH42 116 aa8.54□□□□□ -1.04
USP3-220ENST00000561381 GNG7O60262 68 aa8.54□□□□□ -1.04
USP3-220ENST00000561381 HPGDSO60760 199 aa8.54□□□□□ -1.04
USP3-220ENST00000561381 APOA1P02647 267 aa8.54□□□□□ -1.04
USP3-220ENST00000561381 ATF4P18848 351 aaPredicted RBP8.54□□□□□ -1.04
USP3-220ENST00000561381 ELK1P19419 428 aa8.54□□□□□ -1.04
USP3-220ENST00000561381 PI3P19957 117 aa8.54□□□□□ -1.04
USP3-220ENST00000561381 S100GP29377 79 aa8.54□□□□□ -1.04
USP3-220ENST00000561381 RCVRNP35243 200 aa8.54□□□□□ -1.04
USP3-220ENST00000561381 UCP3P55916 312 aa8.54□□□□□ -1.04
USP3-220ENST00000561381 HSPE1P61604 102 aaKnown RBP8.54□□□□□ -1.04
USP3-220ENST00000561381 VBP1P61758 197 aa8.54□□□□□ -1.04
USP3-220ENST00000561381 RNASE12Q5GAN4 147 aaKnown RBP8.54□□□□□ -1.04
USP3-220ENST00000561381 TOMM20LQ6UXN7 152 aa8.54□□□□□ -1.04
USP3-220ENST00000561381 TCF24Q7RTU0 167 aa8.54□□□□□ -1.04
USP3-220ENST00000561381 RPP25LQ8N5L8 163 aaKnown RBP8.54□□□□□ -1.04
USP3-220ENST00000561381 PHLDA1Q8WV24 401 aaPredicted RBP8.54□□□□□ -1.04
USP3-220ENST00000561381 ST8SIA2Q92186 375 aa8.54□□□□□ -1.04
USP3-220ENST00000561381 SCPEP1Q9HB40 452 aa8.54□□□□□ -1.04
USP3-220ENST00000561381 KLK5Q9Y337 293 aaPredicted RBP8.54□□□□□ -1.04
USP3-220ENST00000561381 KMT2AQ03164 3969 aa8.54□□□□□ -1.04
USP3-220ENST00000561381 A0A087WXM4 84 aa8.53□□□□□ -1.04
USP3-220ENST00000561381 SMIM31A0A1B0GVY4 71 aa8.53□□□□□ -1.04
USP3-220ENST00000561381 MPTX1A8MV57 137 aa8.53□□□□□ -1.04
USP3-220ENST00000561381 DEDDO75618 318 aa8.53□□□□□ -1.04
USP3-220ENST00000561381 IGKV1-5P01602 117 aa8.53□□□□□ -1.04
USP3-220ENST00000561381 ERHP84090 104 aaKnown RBP8.53□□□□□ -1.04
USP3-220ENST00000561381 FAM24BQ8N5W8 94 aa8.53□□□□□ -1.04
USP3-220ENST00000561381 TMEM217Q8N7C4 229 aa8.53□□□□□ -1.04
USP3-220ENST00000561381 TP53RKQ96S44 253 aa8.53□□□□□ -1.04
USP3-220ENST00000561381 RARRES2Q99969 163 aa8.53□□□□□ -1.04
USP3-220ENST00000561381 FUNDC2Q9BWH2 189 aa8.53□□□□□ -1.04
USP3-220ENST00000561381 C6orf62Q9GZU0 229 aaPredicted RBP8.53□□□□□ -1.04
USP3-220ENST00000561381 A0A0B4J293 547 aa8.52□□□□□ -1.05
USP3-220ENST00000561381 DEFB4AO15263 64 aa8.52□□□□□ -1.05
USP3-220ENST00000561381 DFFBO76075 338 aa8.52□□□□□ -1.05
USP3-220ENST00000561381 P0C879 139 aa8.52□□□□□ -1.05
USP3-220ENST00000561381 PGAM2P15259 253 aa8.52□□□□□ -1.05
USP3-220ENST00000561381 PIGPP57054 158 aa8.52□□□□□ -1.05
USP3-220ENST00000561381 NANOS2P60321 138 aaKnown RBP8.52□□□□□ -1.05
USP3-220ENST00000561381 LEMD1Q68G75 181 aa8.52□□□□□ -1.05
USP3-220ENST00000561381 OR11H2Q8NH07 326 aa8.52□□□□□ -1.05
USP3-220ENST00000561381 CMTM3Q96MX0 182 aa8.52□□□□□ -1.05
USP3-220ENST00000561381 VSIRQ9H7M9 311 aa8.52□□□□□ -1.05
USP3-220ENST00000561381 VCX3AQ9NNX9 186 aa8.52□□□□□ -1.05
USP3-220ENST00000561381 MRPL36Q9P0J6 103 aaKnown RBP8.52□□□□□ -1.05
USP3-220ENST00000561381 KLK11Q9UBX7 282 aa8.52□□□□□ -1.05
USP3-220ENST00000561381 PUS1Q9Y606 427 aaKnown RBP eCLIP8.52□□□□□ -1.05
USP3-220ENST00000561381 FRAS1Q86XX4 4008 aa8.51□□□□□ -1.05
USP3-220ENST00000561381 AGRNO00468 2067 aa8.51□□□□□ -1.05
USP3-220ENST00000561381 A0A1B0GU03 582 aa8.51□□□□□ -1.05
USP3-220ENST00000561381 ST8SIA3O43173 380 aa8.51□□□□□ -1.05
USP3-220ENST00000561381 TMEM50AO95807 157 aa8.51□□□□□ -1.05
USP3-220ENST00000561381 GHRHP01286 108 aa8.51□□□□□ -1.05
USP3-220ENST00000561381 NPBWR1P48145 328 aa8.51□□□□□ -1.05
USP3-220ENST00000561381 CMC4P56277 68 aaPredicted RBP8.51□□□□□ -1.05
USP3-220ENST00000561381 DEFB131AP59861 70 aa8.51□□□□□ -1.05
USP3-220ENST00000561381 RND3P61587 244 aa8.51□□□□□ -1.05
USP3-220ENST00000561381 MLANAQ16655 118 aa8.51□□□□□ -1.05
USP3-220ENST00000561381 SP6Q3SY56 376 aa8.51□□□□□ -1.05
USP3-220ENST00000561381 LHFPL1Q86WI0 220 aa8.51□□□□□ -1.05
USP3-220ENST00000561381 DUSP18Q8NEJ0 188 aa8.51□□□□□ -1.05
USP3-220ENST00000561381 GATAD1Q8WUU5 269 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms