RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 STRAPQ9Y3F4 350 aaKnown RBP10.98□□□□□ -0.65
LDLR-213ENST00000560502 NXPH3O95157 252 aa10.97□□□□□ -0.65
LDLR-213ENST00000560502 IGLV2-23P01705 113 aa10.97□□□□□ -0.65
LDLR-213ENST00000560502 IAPPP10997 89 aa10.97□□□□□ -0.65
LDLR-213ENST00000560502 RAB14P61106 215 aa10.97□□□□□ -0.65
LDLR-213ENST00000560502 RPL8P62917 257 aaKnown RBP10.97□□□□□ -0.65
LDLR-213ENST00000560502 PRCDQ00LT1 54 aa10.97□□□□□ -0.65
LDLR-213ENST00000560502 TMEM14EPQ6UXP3 125 aa10.97□□□□□ -0.65
LDLR-213ENST00000560502 THNSL2Q86YJ6 484 aa10.97□□□□□ -0.65
LDLR-213ENST00000560502 MMD2Q8IY49 270 aa10.97□□□□□ -0.65
LDLR-213ENST00000560502 OR1S2Q8NGQ3 325 aa10.97□□□□□ -0.65
LDLR-213ENST00000560502 DPF1Q92782 380 aa10.97□□□□□ -0.65
LDLR-213ENST00000560502 PINX1Q96BK5 328 aaKnown RBP10.97□□□□□ -0.65
LDLR-213ENST00000560502 PARD6GQ9BYG4 376 aaPredicted RBP10.97□□□□□ -0.65
LDLR-213ENST00000560502 ARV1Q9H2C2 271 aa10.97□□□□□ -0.65
LDLR-213ENST00000560502 OR51B2Q9Y5P1 312 aa10.97□□□□□ -0.65
LDLR-213ENST00000560502 A0A1W2PN81 502 aa10.96□□□□□ -0.65
LDLR-213ENST00000560502 SRRM4A7MD48 611 aaKnown RBP10.96□□□□□ -0.65
LDLR-213ENST00000560502 CHRNA7P36544 502 aa10.96□□□□□ -0.65
LDLR-213ENST00000560502 HOXA1P49639 335 aaPredicted RBP10.96□□□□□ -0.65
LDLR-213ENST00000560502 ATP6V1FQ16864 119 aa10.96□□□□□ -0.65
LDLR-213ENST00000560502 C9orf152Q5JTZ5 239 aa10.96□□□□□ -0.65
LDLR-213ENST00000560502 CLLU1Q5K131 121 aa10.96□□□□□ -0.65
LDLR-213ENST00000560502 C18orf65Q6ZTR6 163 aa10.96□□□□□ -0.65
LDLR-213ENST00000560502 OR1L8Q8NGR8 309 aa10.96□□□□□ -0.65
LDLR-213ENST00000560502 P2RX4Q99571 388 aa10.96□□□□□ -0.65
LDLR-213ENST00000560502 ATP5SQ99766 215 aa10.96□□□□□ -0.65
LDLR-213ENST00000560502 COMMD5Q9GZQ3 224 aa10.96□□□□□ -0.65
LDLR-213ENST00000560502 PLEKHA3Q9HB20 300 aa10.96□□□□□ -0.65
LDLR-213ENST00000560502 MOSP00540 346 aa10.95□□□□□ -0.66
LDLR-213ENST00000560502 CFDP00746 253 aaPredicted RBP10.95□□□□□ -0.66
LDLR-213ENST00000560502 SNRNP70P08621 437 aaKnown RBP10.95□□□□□ -0.66
LDLR-213ENST00000560502 FAM106CPP0CH98 169 aa10.95□□□□□ -0.66
LDLR-213ENST00000560502 NHLH2Q02577 135 aa10.95□□□□□ -0.66
LDLR-213ENST00000560502 EBI3Q14213 229 aa10.95□□□□□ -0.66
LDLR-213ENST00000560502 SPANXN5Q5MJ07 72 aa10.95□□□□□ -0.66
LDLR-213ENST00000560502 ZNF329Q86UD4 541 aa10.95□□□□□ -0.66
LDLR-213ENST00000560502 C5orf56Q8N8D9 126 aa10.95□□□□□ -0.66
LDLR-213ENST00000560502 OR5C1Q8NGR4 320 aa10.95□□□□□ -0.66
LDLR-213ENST00000560502 OR2T10Q8NGZ9 312 aa10.95□□□□□ -0.66
LDLR-213ENST00000560502 NOL4LQ96MY1 436 aaPredicted RBP10.95□□□□□ -0.66
LDLR-213ENST00000560502 GINS3Q9BRX5 216 aa10.95□□□□□ -0.66
LDLR-213ENST00000560502 MCRIP2Q9BUT9 160 aaKnown RBP10.95□□□□□ -0.66
LDLR-213ENST00000560502 SLC25A32Q9H2D1 315 aa10.95□□□□□ -0.66
LDLR-213ENST00000560502 TRAV3A0A0B4J244 114 aa10.94□□□□□ -0.66
LDLR-213ENST00000560502 H3BP45 60 aa10.94□□□□□ -0.66
LDLR-213ENST00000560502 CRYGBP07316 175 aa10.94□□□□□ -0.66
LDLR-213ENST00000560502 SEC11BP0C7V7 166 aa10.94□□□□□ -0.66
LDLR-213ENST00000560502 MYCNOSP40205 109 aa10.94□□□□□ -0.66
LDLR-213ENST00000560502 F2RL1P55085 397 aa10.94□□□□□ -0.66
LDLR-213ENST00000560502 RAB11AP62491 216 aa10.94□□□□□ -0.66
LDLR-213ENST00000560502 PSG5Q15238 335 aa10.94□□□□□ -0.66
LDLR-213ENST00000560502 RPL7L1Q6DKI1 246 aaKnown RBP10.94□□□□□ -0.66
LDLR-213ENST00000560502 C8orf86Q6ZUL3 223 aa10.94□□□□□ -0.66
LDLR-213ENST00000560502 HSD17B13Q7Z5P4 300 aaPredicted RBP10.94□□□□□ -0.66
LDLR-213ENST00000560502 NPBQ8NG41 125 aa10.94□□□□□ -0.66
LDLR-213ENST00000560502 OR10P1Q8NGE3 313 aa10.94□□□□□ -0.66
LDLR-213ENST00000560502 GNPNAT1Q96EK6 184 aaPredicted RBP10.94□□□□□ -0.66
LDLR-213ENST00000560502 SRSF8Q9BRL6 282 aaKnown RBP10.94□□□□□ -0.66
LDLR-213ENST00000560502 GGACTQ9BVM4 153 aa10.94□□□□□ -0.66
LDLR-213ENST00000560502 HEYLQ9NQ87 328 aaPredicted RBP10.94□□□□□ -0.66
LDLR-213ENST00000560502 IGHV3-72A0A0B4J1Y9 119 aa10.93□□□□□ -0.66
LDLR-213ENST00000560502 FGF16O43320 207 aa10.93□□□□□ -0.66
LDLR-213ENST00000560502 SLC25A17O43808 307 aa10.93□□□□□ -0.66
LDLR-213ENST00000560502 CST7O76096 145 aa10.93□□□□□ -0.66
LDLR-213ENST00000560502 ACTL6BO94805 426 aa10.93□□□□□ -0.66
LDLR-213ENST00000560502 NDUFA3O95167 84 aa10.93□□□□□ -0.66
LDLR-213ENST00000560502 IFNA5P01569 189 aa10.93□□□□□ -0.66
LDLR-213ENST00000560502 OR8U8P0C7N1 319 aa10.93□□□□□ -0.66
LDLR-213ENST00000560502 METTL15P1P0C7V9 234 aa10.93□□□□□ -0.66
LDLR-213ENST00000560502 HTR2BP41595 481 aa10.93□□□□□ -0.66
LDLR-213ENST00000560502 TMEM267Q0VDI3 215 aaPredicted RBP10.93□□□□□ -0.66
LDLR-213ENST00000560502 PRSS8Q16651 343 aa10.93□□□□□ -0.66
LDLR-213ENST00000560502 ALKAL2Q6UX46 152 aa10.93□□□□□ -0.66
LDLR-213ENST00000560502 PPP1R27Q86WC6 154 aa10.93□□□□□ -0.66
LDLR-213ENST00000560502 LILRB2Q8N423 598 aa10.93□□□□□ -0.66
LDLR-213ENST00000560502 SLC24A4Q8NFF2 622 aa10.93□□□□□ -0.66
LDLR-213ENST00000560502 OR4C12Q96R67 309 aa10.93□□□□□ -0.66
LDLR-213ENST00000560502 SMIM3Q9BZL3 60 aa10.93□□□□□ -0.66
LDLR-213ENST00000560502 NDUFA4L2Q9NRX3 87 aa10.93□□□□□ -0.66
LDLR-213ENST00000560502 KIAA1456Q9P272 454 aa10.93□□□□□ -0.66
LDLR-213ENST00000560502 TEX50A0A1B0GTY4 177 aa10.92□□□□□ -0.66
LDLR-213ENST00000560502 C15orf62A8K5M9 175 aa10.92□□□□□ -0.66
LDLR-213ENST00000560502 FNDC10F2Z333 226 aa10.92□□□□□ -0.66
LDLR-213ENST00000560502 RRHO14718 337 aa10.92□□□□□ -0.66
LDLR-213ENST00000560502 NBR2O15453 112 aa10.92□□□□□ -0.66
LDLR-213ENST00000560502 IFNA10P01566 189 aa10.92□□□□□ -0.66
LDLR-213ENST00000560502 IGHG2P01859 326 aa10.92□□□□□ -0.66
LDLR-213ENST00000560502 NPY1RP25929 384 aa10.92□□□□□ -0.66
LDLR-213ENST00000560502 RAB5CP51148 216 aa10.92□□□□□ -0.66
LDLR-213ENST00000560502 ERHP84090 104 aaKnown RBP10.92□□□□□ -0.66
LDLR-213ENST00000560502 SLC38A11Q08AI6 406 aa10.92□□□□□ -0.66
LDLR-213ENST00000560502 VWC2Q2TAL6 325 aa10.92□□□□□ -0.66
LDLR-213ENST00000560502 Q8N6K4 173 aa10.92□□□□□ -0.66
LDLR-213ENST00000560502 KLHL30-AS1Q8NEE0 82 aa10.92□□□□□ -0.66
LDLR-213ENST00000560502 RNF141Q8WVD5 230 aa10.92□□□□□ -0.66
LDLR-213ENST00000560502 TMEM147Q9BVK8 224 aa10.92□□□□□ -0.66
LDLR-213ENST00000560502 ZNF430Q9H8G1 570 aaPredicted RBP10.92□□□□□ -0.66
LDLR-213ENST00000560502 METTL1Q9UBP6 276 aaKnown RBP10.92□□□□□ -0.66
LDLR-213ENST00000560502 DYNC2H1Q8NCM8 4307 aaKnown RBP10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms