RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 SPINK9Q5DT21 86 aa9.99□□□□□ -0.81
NEDD8-208ENST00000560427 C1QL4Q86Z23 238 aa9.99□□□□□ -0.81
NEDD8-208ENST00000560427 OR1S1Q8NH92 325 aa9.99□□□□□ -0.81
NEDD8-208ENST00000560427 DLX4Q92988 240 aaPredicted RBP9.99□□□□□ -0.81
NEDD8-208ENST00000560427 CEBPZOSA8MTT3 80 aa9.98□□□□□ -0.81
NEDD8-208ENST00000560427 SEC14L6B5MCN3 397 aa9.98□□□□□ -0.81
NEDD8-208ENST00000560427 K7EIM0 57 aa9.98□□□□□ -0.81
NEDD8-208ENST00000560427 LY86O95711 162 aa9.98□□□□□ -0.81
NEDD8-208ENST00000560427 IFNA21P01568 189 aa9.98□□□□□ -0.81
NEDD8-208ENST00000560427 TRBV12-3P01733 135 aa9.98□□□□□ -0.81
NEDD8-208ENST00000560427 H2AFB2P0C5Z0 115 aa9.98□□□□□ -0.81
NEDD8-208ENST00000560427 RNASE2P10153 161 aaKnown RBP9.98□□□□□ -0.81
NEDD8-208ENST00000560427 FCGR2BP31994 310 aaPredicted RBP9.98□□□□□ -0.81
NEDD8-208ENST00000560427 ARL3P36405 182 aa9.98□□□□□ -0.81
NEDD8-208ENST00000560427 ATP5IP56385 69 aaPredicted RBP9.98□□□□□ -0.81
NEDD8-208ENST00000560427 KLF5Q13887 457 aaPredicted RBP9.98□□□□□ -0.81
NEDD8-208ENST00000560427 NOXA1Q86UR1 476 aa9.98□□□□□ -0.81
NEDD8-208ENST00000560427 DUSP18Q8NEJ0 188 aa9.98□□□□□ -0.81
NEDD8-208ENST00000560427 ELOVL1Q9BW60 279 aa9.98□□□□□ -0.81
NEDD8-208ENST00000560427 HIPK2Q9H2X6 1198 aa9.98□□□□□ -0.81
NEDD8-208ENST00000560427 HEYLQ9NQ87 328 aaPredicted RBP9.98□□□□□ -0.81
NEDD8-208ENST00000560427 C21orf62Q9NYP8 219 aa9.98□□□□□ -0.81
NEDD8-208ENST00000560427 CMYA5Q8N3K9 4069 aa9.97□□□□□ -0.81
NEDD8-208ENST00000560427 TRAV6A0A075B6T7 132 aa9.97□□□□□ -0.81
NEDD8-208ENST00000560427 MED6O75586 246 aa9.97□□□□□ -0.81
NEDD8-208ENST00000560427 HOXB5P09067 269 aa9.97□□□□□ -0.81
NEDD8-208ENST00000560427 EGFEM1PQ0D2K5 195 aa9.97□□□□□ -0.81
NEDD8-208ENST00000560427 GGNBP1Q5YKI7 109 aa9.97□□□□□ -0.81
NEDD8-208ENST00000560427 ACSM6Q6P461 480 aa9.97□□□□□ -0.81
NEDD8-208ENST00000560427 SPSB3Q6PJ21 355 aa9.97□□□□□ -0.81
NEDD8-208ENST00000560427 CLEC19AQ6UXS0 136 aa9.97□□□□□ -0.81
NEDD8-208ENST00000560427 REC114Q7Z4M0 266 aa9.97□□□□□ -0.81
NEDD8-208ENST00000560427 SLC24A4Q8NFF2 622 aa9.97□□□□□ -0.81
NEDD8-208ENST00000560427 ZNF431Q8TF32 576 aaPredicted RBP9.97□□□□□ -0.81
NEDD8-208ENST00000560427 SCARB1Q8WTV0 552 aa9.97□□□□□ -0.81
NEDD8-208ENST00000560427 MISP3Q96FF7 219 aa9.97□□□□□ -0.81
NEDD8-208ENST00000560427 BSCL2Q96G97 398 aaPredicted RBP9.97□□□□□ -0.81
NEDD8-208ENST00000560427 TXN2Q99757 166 aa9.97□□□□□ -0.81
NEDD8-208ENST00000560427 PEMTQ9UBM1 199 aa9.97□□□□□ -0.81
NEDD8-208ENST00000560427 U3KQ87 197 aa9.97□□□□□ -0.81
NEDD8-208ENST00000560427 NOTCH3Q9UM47 2321 aa9.96□□□□□ -0.81
NEDD8-208ENST00000560427 I3L2K1 104 aa9.96□□□□□ -0.82
NEDD8-208ENST00000560427 LGALS9O00182 355 aa9.96□□□□□ -0.82
NEDD8-208ENST00000560427 MT-CO2P00403 227 aa9.96□□□□□ -0.82
NEDD8-208ENST00000560427 IL5P05113 134 aa9.96□□□□□ -0.82
NEDD8-208ENST00000560427 GPR183P32249 361 aa9.96□□□□□ -0.82
NEDD8-208ENST00000560427 C2orf83Q53S99 150 aa9.96□□□□□ -0.82
NEDD8-208ENST00000560427 PLET1Q6UQ28 207 aa9.96□□□□□ -0.82
NEDD8-208ENST00000560427 GPHB5Q86YW7 130 aa9.96□□□□□ -0.82
NEDD8-208ENST00000560427 OR9G4Q8NGQ1 327 aa9.96□□□□□ -0.82
NEDD8-208ENST00000560427 RNASEH2CQ8TDP1 164 aaKnown RBP9.96□□□□□ -0.82
NEDD8-208ENST00000560427 DTD1Q8TEA8 209 aa9.96□□□□□ -0.82
NEDD8-208ENST00000560427 CIB3Q96Q77 187 aaPredicted RBP9.96□□□□□ -0.82
NEDD8-208ENST00000560427 SIGLEC8Q9NYZ4 499 aa9.96□□□□□ -0.82
NEDD8-208ENST00000560427 NOTCH1P46531 2555 aa9.95□□□□□ -0.82
NEDD8-208ENST00000560427 RPS10-NUDT3A0A1W2PQS6 291 aa9.95□□□□□ -0.82
NEDD8-208ENST00000560427 PPP5D1E7EU14 171 aa9.95□□□□□ -0.82
NEDD8-208ENST00000560427 TGOLN2O43493 480 aa9.95□□□□□ -0.82
NEDD8-208ENST00000560427 PRAF2O60831 178 aa9.95□□□□□ -0.82
NEDD8-208ENST00000560427 SCGB2A1O75556 95 aa9.95□□□□□ -0.82
NEDD8-208ENST00000560427 ADAP1O75689 374 aa9.95□□□□□ -0.82
NEDD8-208ENST00000560427 IGHV3-23P01764 117 aa9.95□□□□□ -0.82
NEDD8-208ENST00000560427 CLEC3BP05452 202 aa9.95□□□□□ -0.82
NEDD8-208ENST00000560427 NPY1RP25929 384 aa9.95□□□□□ -0.82
NEDD8-208ENST00000560427 MFAP4P55083 255 aa9.95□□□□□ -0.82
NEDD8-208ENST00000560427 SYNJ2BPP57105 145 aa9.95□□□□□ -0.82
NEDD8-208ENST00000560427 NRARPQ7Z6K4 114 aa9.95□□□□□ -0.82
NEDD8-208ENST00000560427 OR4C12Q96R67 309 aa9.95□□□□□ -0.82
NEDD8-208ENST00000560427 RBKSQ9H477 322 aa9.95□□□□□ -0.82
NEDD8-208ENST00000560427 GPN1Q9HCN4 374 aaPredicted RBP9.95□□□□□ -0.82
NEDD8-208ENST00000560427 PALMDQ9NP74 551 aa9.95□□□□□ -0.82
NEDD8-208ENST00000560427 S4R3C0 116 aa9.95□□□□□ -0.82
NEDD8-208ENST00000560427 A8MWP6 167 aa9.94□□□□□ -0.82
NEDD8-208ENST00000560427 F8W735 103 aaPredicted RBP9.94□□□□□ -0.82
NEDD8-208ENST00000560427 SAP30O75446 220 aa9.94□□□□□ -0.82
NEDD8-208ENST00000560427 NPBWR1P48145 328 aa9.94□□□□□ -0.82
NEDD8-208ENST00000560427 FAM106AQ4KMX7 169 aa9.94□□□□□ -0.82
NEDD8-208ENST00000560427 Q56UQ5 140 aa9.94□□□□□ -0.82
NEDD8-208ENST00000560427 OR52B4Q8NGK2 314 aa9.94□□□□□ -0.82
NEDD8-208ENST00000560427 PINX1Q96BK5 328 aaKnown RBP9.94□□□□□ -0.82
NEDD8-208ENST00000560427 OR2T8A6NH00 312 aa9.93□□□□□ -0.82
NEDD8-208ENST00000560427 NUPL2O15504 423 aaKnown RBP9.93□□□□□ -0.82
NEDD8-208ENST00000560427 SYNGR2O43760 224 aa9.93□□□□□ -0.82
NEDD8-208ENST00000560427 NXPH3O95157 252 aa9.93□□□□□ -0.82
NEDD8-208ENST00000560427 OR2C1O95371 312 aa9.93□□□□□ -0.82
NEDD8-208ENST00000560427 IFNA10P01566 189 aa9.93□□□□□ -0.82
NEDD8-208ENST00000560427 SLC25A4P12235 298 aa9.93□□□□□ -0.82
NEDD8-208ENST00000560427 OPRK1P41145 380 aa9.93□□□□□ -0.82
NEDD8-208ENST00000560427 RPP30P78346 268 aaKnown RBP9.93□□□□□ -0.82
NEDD8-208ENST00000560427 RELQ04864 619 aaPredicted RBP9.93□□□□□ -0.82
NEDD8-208ENST00000560427 ETFRF1Q6IPR1 90 aa9.93□□□□□ -0.82
NEDD8-208ENST00000560427 C12orf45Q8N5I9 185 aaPredicted RBP9.93□□□□□ -0.82
NEDD8-208ENST00000560427 OR4D5Q8NGN0 318 aa9.93□□□□□ -0.82
NEDD8-208ENST00000560427 SEC22CQ9BRL7 303 aa9.93□□□□□ -0.82
NEDD8-208ENST00000560427 MARVELD1Q9BSK0 173 aa9.93□□□□□ -0.82
NEDD8-208ENST00000560427 ZNF436Q9C0F3 470 aaPredicted RBP9.93□□□□□ -0.82
NEDD8-208ENST00000560427 IGHV3-21A0A0B4J1V1 117 aa9.92□□□□□ -0.82
NEDD8-208ENST00000560427 SNRPGP15A8MWD9 76 aa9.92□□□□□ -0.82
NEDD8-208ENST00000560427 INMT-MINDY4F8WBC2 141 aa9.92□□□□□ -0.82
NEDD8-208ENST00000560427 NDUFA4O00483 81 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms