RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 MISP3Q96FF7 219 aa16.73■□□□□ 0.27
SNX1-206ENST00000559389 CXorf58Q96LI9 332 aa16.73■□□□□ 0.27
SNX1-206ENST00000559389 MAGT1Q9H0U3 335 aa16.73■□□□□ 0.27
SNX1-206ENST00000559389 ALG5Q9Y673 324 aa16.73■□□□□ 0.27
SNX1-206ENST00000559389 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP16.72■□□□□ 0.27
SNX1-206ENST00000559389 C5orf51A6NDU8 294 aa16.72■□□□□ 0.27
SNX1-206ENST00000559389 CORTO00230 105 aa16.72■□□□□ 0.27
SNX1-206ENST00000559389 SYNGR2O43760 224 aa16.72■□□□□ 0.27
SNX1-206ENST00000559389 TRBV12-3P01733 135 aa16.72■□□□□ 0.27
SNX1-206ENST00000559389 NPY1RP25929 384 aa16.72■□□□□ 0.27
SNX1-206ENST00000559389 C2orf83Q53S99 150 aa16.72■□□□□ 0.27
SNX1-206ENST00000559389 FAM209BQ5JX69 171 aa16.72■□□□□ 0.27
SNX1-206ENST00000559389 GSG1LQ6UXU4 331 aa16.72■□□□□ 0.27
SNX1-206ENST00000559389 OR1N2Q8NGR9 330 aa16.72■□□□□ 0.27
SNX1-206ENST00000559389 TMEM170AQ8WVE7 144 aa16.72■□□□□ 0.27
SNX1-206ENST00000559389 S4R3C0 116 aa16.72■□□□□ 0.27
SNX1-206ENST00000559389 DNHD1Q96M86 4753 aa16.72■□□□□ 0.27
SNX1-206ENST00000559389 ANKRD34BA5PLL1 514 aa16.71■□□□□ 0.27
SNX1-206ENST00000559389 I3L2K1 104 aa16.71■□□□□ 0.27
SNX1-206ENST00000559389 GOSR2O14653 212 aa16.71■□□□□ 0.27
SNX1-206ENST00000559389 HSPB1P04792 205 aaKnown RBP16.71■□□□□ 0.27
SNX1-206ENST00000559389 IAPPP10997 89 aa16.71■□□□□ 0.27
SNX1-206ENST00000559389 POLR2GP62487 172 aaKnown RBP eCLIP16.71■□□□□ 0.27
SNX1-206ENST00000559389 LINC00482Q8N8I6 264 aa16.71■□□□□ 0.27
SNX1-206ENST00000559389 ZNF502Q8TBZ5 544 aa16.71■□□□□ 0.27
SNX1-206ENST00000559389 C2orf50Q96LR7 162 aa16.71■□□□□ 0.27
SNX1-206ENST00000559389 CIB3Q96Q77 187 aaPredicted RBP16.71■□□□□ 0.27
SNX1-206ENST00000559389 GSKIPQ9P0R6 139 aa16.71■□□□□ 0.27
SNX1-206ENST00000559389 PEF1Q9UBV8 284 aaKnown RBP16.71■□□□□ 0.27
SNX1-206ENST00000559389 TRBV7-1A0A0A6YYK4 115 aa16.7■□□□□ 0.26
SNX1-206ENST00000559389 LINC01619G3V211 115 aa16.7■□□□□ 0.26
SNX1-206ENST00000559389 SSNA1O43805 119 aa16.7■□□□□ 0.26
SNX1-206ENST00000559389 SCGB1D2O95969 90 aa16.7■□□□□ 0.26
SNX1-206ENST00000559389 IGHV3-23P01764 117 aa16.7■□□□□ 0.26
SNX1-206ENST00000559389 OR8U8P0C7N1 319 aa16.7■□□□□ 0.26
SNX1-206ENST00000559389 TREML4Q6UXN2 200 aa16.7■□□□□ 0.26
SNX1-206ENST00000559389 SCARB1Q8WTV0 552 aa16.7■□□□□ 0.26
SNX1-206ENST00000559389 RANGRFQ9HD47 186 aaPredicted RBP16.7■□□□□ 0.26
SNX1-206ENST00000559389 RCL1Q9Y2P8 373 aaKnown RBP16.7■□□□□ 0.26
SNX1-206ENST00000559389 U3KQ87 197 aa16.7■□□□□ 0.26
SNX1-206ENST00000559389 WRBO00258 174 aa16.69■□□□□ 0.26
SNX1-206ENST00000559389 LY86O95711 162 aa16.69■□□□□ 0.26
SNX1-206ENST00000559389 MT-CO2P00403 227 aa16.69■□□□□ 0.26
SNX1-206ENST00000559389 DPF1Q92782 380 aa16.69■□□□□ 0.26
SNX1-206ENST00000559389 PINX1Q96BK5 328 aaKnown RBP16.69■□□□□ 0.26
SNX1-206ENST00000559389 C21orf62Q9NYP8 219 aa16.69■□□□□ 0.26
SNX1-206ENST00000559389 IGHV3-21A0A0B4J1V1 117 aa16.68■□□□□ 0.26
SNX1-206ENST00000559389 C15orf62A8K5M9 175 aa16.68■□□□□ 0.26
SNX1-206ENST00000559389 BMPR1BO00238 502 aa16.68■□□□□ 0.26
SNX1-206ENST00000559389 SSSCA1O60232 199 aa16.68■□□□□ 0.26
SNX1-206ENST00000559389 IFNA10P01566 189 aa16.68■□□□□ 0.26
SNX1-206ENST00000559389 MBPP02686 304 aaPredicted RBP16.68■□□□□ 0.26
SNX1-206ENST00000559389 ATP5IP56385 69 aaPredicted RBP16.68■□□□□ 0.26
SNX1-206ENST00000559389 IL15RAQ13261 267 aa16.68■□□□□ 0.26
SNX1-206ENST00000559389 CLEC19AQ6UXS0 136 aa16.68■□□□□ 0.26
SNX1-206ENST00000559389 NOXA1Q86UR1 476 aa16.68■□□□□ 0.26
SNX1-206ENST00000559389 RNASEH2CQ8TDP1 164 aaKnown RBP16.68■□□□□ 0.26
SNX1-206ENST00000559389 ATP6V0BQ99437 205 aa16.68■□□□□ 0.26
SNX1-206ENST00000559389 F8W735 103 aaPredicted RBP16.67■□□□□ 0.26
SNX1-206ENST00000559389 SIX6O95475 246 aa16.67■□□□□ 0.26
SNX1-206ENST00000559389 ZP3P21754 424 aa16.67■□□□□ 0.26
SNX1-206ENST00000559389 HOXD3P31249 432 aaPredicted RBP16.67■□□□□ 0.26
SNX1-206ENST00000559389 SLURP1P55000 103 aa16.67■□□□□ 0.26
SNX1-206ENST00000559389 FNDC4Q9H6D8 234 aaPredicted RBP16.67■□□□□ 0.26
SNX1-206ENST00000559389 MGAT4CQ9UBM8 478 aa16.67■□□□□ 0.26
SNX1-206ENST00000559389 FCGR2BP31994 310 aaPredicted RBP16.66■□□□□ 0.26
SNX1-206ENST00000559389 GPR183P32249 361 aa16.66■□□□□ 0.26
SNX1-206ENST00000559389 OPRK1P41145 380 aa16.66■□□□□ 0.26
SNX1-206ENST00000559389 OR4C12Q96R67 309 aa16.66■□□□□ 0.26
SNX1-206ENST00000559389 PPP5D1E7EU14 171 aa16.65■□□□□ 0.26
SNX1-206ENST00000559389 H3BP45 60 aa16.65■□□□□ 0.26
SNX1-206ENST00000559389 K7EPK0 472 aa16.65■□□□□ 0.26
SNX1-206ENST00000559389 TMEM50AO95807 157 aa16.65■□□□□ 0.26
SNX1-206ENST00000559389 ARL3P36405 182 aa16.65■□□□□ 0.26
SNX1-206ENST00000559389 H2BFSP57053 126 aa16.65■□□□□ 0.26
SNX1-206ENST00000559389 WFDC9Q8NEX5 89 aa16.65■□□□□ 0.26
SNX1-206ENST00000559389 RAB40CQ96S21 281 aa16.65■□□□□ 0.26
SNX1-206ENST00000559389 RPS10-NUDT3A0A1W2PQS6 291 aa16.64■□□□□ 0.25
SNX1-206ENST00000559389 IGHV3-48P01763 117 aa16.64■□□□□ 0.25
SNX1-206ENST00000559389 CD33P20138 364 aa16.64■□□□□ 0.25
SNX1-206ENST00000559389 PAX9P55771 341 aa16.64■□□□□ 0.25
SNX1-206ENST00000559389 RPP30P78346 268 aaKnown RBP16.64■□□□□ 0.25
SNX1-206ENST00000559389 SMIM8Q96KF7 97 aa16.64■□□□□ 0.25
SNX1-206ENST00000559389 TXN2Q99757 166 aa16.64■□□□□ 0.25
SNX1-206ENST00000559389 NMES1Q9C002 83 aa16.64■□□□□ 0.25
SNX1-206ENST00000559389 LSM5Q9Y4Y9 91 aaKnown RBP16.64■□□□□ 0.25
SNX1-206ENST00000559389 TGOLN2O43493 480 aa16.63■□□□□ 0.25
SNX1-206ENST00000559389 GGCTO75223 188 aaKnown RBP16.63■□□□□ 0.25
SNX1-206ENST00000559389 CLEC3BP05452 202 aa16.63■□□□□ 0.25
SNX1-206ENST00000559389 MFAP4P55083 255 aa16.63■□□□□ 0.25
SNX1-206ENST00000559389 TAS2R30P59541 319 aa16.63■□□□□ 0.25
SNX1-206ENST00000559389 RAB32Q13637 225 aa16.63■□□□□ 0.25
SNX1-206ENST00000559389 RPEL1Q2QD12 228 aa16.63■□□□□ 0.25
SNX1-206ENST00000559389 Q56UQ5 140 aa16.63■□□□□ 0.25
SNX1-206ENST00000559389 SPANXN5Q5MJ07 72 aa16.63■□□□□ 0.25
SNX1-206ENST00000559389 UBAC2Q8NBM4 344 aa16.63■□□□□ 0.25
SNX1-206ENST00000559389 DCUN1D4Q92564 292 aa16.63■□□□□ 0.25
SNX1-206ENST00000559389 DLX4Q92988 240 aaPredicted RBP16.63■□□□□ 0.25
SNX1-206ENST00000559389 BSCL2Q96G97 398 aaPredicted RBP16.63■□□□□ 0.25
SNX1-206ENST00000559389 C11orf1Q9H5F2 150 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms