RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 CCL17Q92583 94 aa10.47□□□□□ -0.73
LDLR-207ENST00000558013 HARBI1Q96MB7 349 aa10.47□□□□□ -0.73
LDLR-207ENST00000558013 MS4A10Q96PG2 267 aa10.47□□□□□ -0.73
LDLR-207ENST00000558013 IL36BQ9NZH7 164 aa10.47□□□□□ -0.73
LDLR-207ENST00000558013 PRNDQ9UKY0 176 aa10.47□□□□□ -0.73
LDLR-207ENST00000558013 FCN1O00602 326 aa10.46□□□□□ -0.73
LDLR-207ENST00000558013 PLAUP00749 431 aa10.46□□□□□ -0.73
LDLR-207ENST00000558013 REG1AP05451 166 aa10.46□□□□□ -0.73
LDLR-207ENST00000558013 Q6ZS92 163 aa10.46□□□□□ -0.73
LDLR-207ENST00000558013 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.46□□□□□ -0.73
LDLR-207ENST00000558013 H1FXQ92522 213 aaKnown RBP10.46□□□□□ -0.73
LDLR-207ENST00000558013 ATG101Q9BSB4 218 aa10.46□□□□□ -0.73
LDLR-207ENST00000558013 CBLN4Q9NTU7 201 aa10.46□□□□□ -0.73
LDLR-207ENST00000558013 MRPL36Q9P0J6 103 aaKnown RBP10.46□□□□□ -0.73
LDLR-207ENST00000558013 SLC25A10Q9UBX3 287 aaPredicted RBP10.46□□□□□ -0.73
LDLR-207ENST00000558013 POLR3KQ9Y2Y1 108 aaPredicted RBP10.46□□□□□ -0.73
LDLR-207ENST00000558013 DPRXA6NFQ7 191 aa10.46□□□□□ -0.74
LDLR-207ENST00000558013 ITGB1BP1O14713 200 aa10.46□□□□□ -0.74
LDLR-207ENST00000558013 GNG4P50150 75 aa10.46□□□□□ -0.74
LDLR-207ENST00000558013 YPEL3P61236 119 aaPredicted RBP10.46□□□□□ -0.74
LDLR-207ENST00000558013 RTL8BQ17RB0 113 aa10.46□□□□□ -0.74
LDLR-207ENST00000558013 TMEM200BQ69YZ2 307 aa10.46□□□□□ -0.74
LDLR-207ENST00000558013 Q6ZWC4 215 aa10.46□□□□□ -0.74
LDLR-207ENST00000558013 TPSG1Q9NRR2 321 aa10.46□□□□□ -0.74
LDLR-207ENST00000558013 RNF114Q9Y508 228 aa10.46□□□□□ -0.74
LDLR-207ENST00000558013 IGHV3-72A0A0B4J1Y9 119 aa10.45□□□□□ -0.74
LDLR-207ENST00000558013 SNURFLB1AK76 121 aa10.45□□□□□ -0.74
LDLR-207ENST00000558013 PYYP10082 97 aa10.45□□□□□ -0.74
LDLR-207ENST00000558013 POU2AF1Q16633 256 aa10.45□□□□□ -0.74
LDLR-207ENST00000558013 C11orf52Q96A22 123 aa10.45□□□□□ -0.74
LDLR-207ENST00000558013 FNDC4Q9H6D8 234 aaPredicted RBP10.45□□□□□ -0.74
LDLR-207ENST00000558013 KLK10O43240 276 aa10.45□□□□□ -0.74
LDLR-207ENST00000558013 IRF2P14316 349 aa10.45□□□□□ -0.74
LDLR-207ENST00000558013 AREGP15514 252 aa10.45□□□□□ -0.74
LDLR-207ENST00000558013 CDKN1AP38936 164 aa10.45□□□□□ -0.74
LDLR-207ENST00000558013 ADIPOQQ15848 244 aa10.45□□□□□ -0.74
LDLR-207ENST00000558013 CMTM2Q8TAZ6 248 aa10.45□□□□□ -0.74
LDLR-207ENST00000558013 FAM168AQ92567 244 aa10.45□□□□□ -0.74
LDLR-207ENST00000558013 SGK494Q96LW2 274 aa10.45□□□□□ -0.74
LDLR-207ENST00000558013 TXNDC17Q9BRA2 123 aa10.45□□□□□ -0.74
LDLR-207ENST00000558013 CGB1A6NKQ9 187 aa10.44□□□□□ -0.74
LDLR-207ENST00000558013 MGST1P10620 155 aaKnown RBP10.44□□□□□ -0.74
LDLR-207ENST00000558013 RAB4BP61018 213 aa10.44□□□□□ -0.74
LDLR-207ENST00000558013 WT1-ASQ06250 92 aa10.44□□□□□ -0.74
LDLR-207ENST00000558013 ADTRPQ96IZ2 230 aa10.44□□□□□ -0.74
LDLR-207ENST00000558013 A0A0G2JNJ9 132 aa10.44□□□□□ -0.74
LDLR-207ENST00000558013 H0YJW9 148 aa10.44□□□□□ -0.74
LDLR-207ENST00000558013 CRISP2P16562 243 aa10.44□□□□□ -0.74
LDLR-207ENST00000558013 BSPH1Q075Z2 132 aa10.44□□□□□ -0.74
LDLR-207ENST00000558013 NDUFAF3Q9BU61 184 aa10.44□□□□□ -0.74
LDLR-207ENST00000558013 SSBP3Q9BWW4 388 aaPredicted RBP10.44□□□□□ -0.74
LDLR-207ENST00000558013 COMMD5Q9GZQ3 224 aa10.44□□□□□ -0.74
LDLR-207ENST00000558013 Q9UFV3 132 aa10.44□□□□□ -0.74
LDLR-207ENST00000558013 ZNF257Q9Y2Q1 563 aa10.44□□□□□ -0.74
LDLR-207ENST00000558013 MALRD1Q5VYJ5 2156 aa10.44□□□□□ -0.74
LDLR-207ENST00000558013 TRAV34A0A0B4J273 112 aa10.44□□□□□ -0.74
LDLR-207ENST00000558013 hADV38S2A0JD32 116 aa10.44□□□□□ -0.74
LDLR-207ENST00000558013 ZNF705FA8MVS1 300 aaPredicted RBP10.44□□□□□ -0.74
LDLR-207ENST00000558013 ZNF705DP0CH99 300 aaPredicted RBP10.44□□□□□ -0.74
LDLR-207ENST00000558013 ZNF705BP0CI00 300 aaPredicted RBP10.44□□□□□ -0.74
LDLR-207ENST00000558013 TNFSF4P23510 183 aa10.44□□□□□ -0.74
LDLR-207ENST00000558013 CEACAM8P31997 349 aaPredicted RBP10.44□□□□□ -0.74
LDLR-207ENST00000558013 IQCJQ1A5X6 159 aa10.44□□□□□ -0.74
LDLR-207ENST00000558013 MRPL54Q6P161 138 aaKnown RBP10.44□□□□□ -0.74
LDLR-207ENST00000558013 TBX15Q96SF7 602 aa10.44□□□□□ -0.74
LDLR-207ENST00000558013 SLC25A33Q9BSK2 321 aa10.44□□□□□ -0.74
LDLR-207ENST00000558013 LINC00574Q9H8X3 128 aa10.44□□□□□ -0.74
LDLR-207ENST00000558013 NAGKQ9UJ70 344 aa10.44□□□□□ -0.74
LDLR-207ENST00000558013 IGHV3-21A0A0B4J1V1 117 aa10.43□□□□□ -0.74
LDLR-207ENST00000558013 MT-CO2P00403 227 aa10.43□□□□□ -0.74
LDLR-207ENST00000558013 IGLV2-8P01709 118 aa10.43□□□□□ -0.74
LDLR-207ENST00000558013 CD69Q07108 199 aa10.43□□□□□ -0.74
LDLR-207ENST00000558013 RPEL1Q2QD12 228 aa10.43□□□□□ -0.74
LDLR-207ENST00000558013 IGFL3Q6UXB1 125 aa10.43□□□□□ -0.74
LDLR-207ENST00000558013 FAM103A1Q9BTL3 118 aaKnown RBP10.43□□□□□ -0.74
LDLR-207ENST00000558013 TECRQ9NZ01 308 aaKnown RBP10.43□□□□□ -0.74
LDLR-207ENST00000558013 C9JCJ5 164 aa10.43□□□□□ -0.74
LDLR-207ENST00000558013 C2orf83Q53S99 150 aa10.43□□□□□ -0.74
LDLR-207ENST00000558013 ZNF833PQ6ZTB9 187 aa10.43□□□□□ -0.74
LDLR-207ENST00000558013 TGIF2LXQ8IUE1 241 aa10.43□□□□□ -0.74
LDLR-207ENST00000558013 NPIPB3Q92617 1050 aa10.43□□□□□ -0.74
LDLR-207ENST00000558013 CORO2AQ92828 525 aa10.43□□□□□ -0.74
LDLR-207ENST00000558013 HSPB9Q9BQS6 159 aa10.43□□□□□ -0.74
LDLR-207ENST00000558013 NCOR1P1Q9H4R4 102 aa10.43□□□□□ -0.74
LDLR-207ENST00000558013 NDUFA4L2Q9NRX3 87 aa10.43□□□□□ -0.74
LDLR-207ENST00000558013 SERTAD4Q9NUC0 356 aa10.43□□□□□ -0.74
LDLR-207ENST00000558013 LINC00312Q9Y6C7 94 aa10.43□□□□□ -0.74
LDLR-207ENST00000558013 ATRXP46100 2492 aa10.43□□□□□ -0.74
LDLR-207ENST00000558013 THBDP07204 575 aa10.42□□□□□ -0.74
LDLR-207ENST00000558013 PRB4P10163 310 aaPredicted RBP10.42□□□□□ -0.74
LDLR-207ENST00000558013 RPL8P62917 257 aaKnown RBP10.42□□□□□ -0.74
LDLR-207ENST00000558013 TEX36Q5VZQ5 186 aa10.42□□□□□ -0.74
LDLR-207ENST00000558013 BAGE3Q86Y29 109 aa10.42□□□□□ -0.74
LDLR-207ENST00000558013 BAGE2Q86Y30 109 aa10.42□□□□□ -0.74
LDLR-207ENST00000558013 BTF3L4Q96K17 158 aa10.42□□□□□ -0.74
LDLR-207ENST00000558013 FAM167A-AS1Q96KT0 104 aa10.42□□□□□ -0.74
LDLR-207ENST00000558013 SFXN3Q9BWM7 321 aa10.42□□□□□ -0.74
LDLR-207ENST00000558013 SLC25A2Q9BXI2 301 aa10.42□□□□□ -0.74
LDLR-207ENST00000558013 C17orf100A8MU93 164 aa10.42□□□□□ -0.74
LDLR-207ENST00000558013 NOL4LQ96MY1 436 aaPredicted RBP10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms