RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 COMPP49747 757 aaPredicted RBP13.51□□□□□ -0.25
LDLR-206ENST00000557958 LMO4P61968 165 aa13.51□□□□□ -0.25
LDLR-206ENST00000557958 WT1-ASQ06250 92 aa13.51□□□□□ -0.25
LDLR-206ENST00000557958 RHEBQ15382 184 aa13.51□□□□□ -0.25
LDLR-206ENST00000557958 AWAT1Q58HT5 328 aa13.51□□□□□ -0.25
LDLR-206ENST00000557958 C10orf55Q5SWW7 151 aa13.51□□□□□ -0.25
LDLR-206ENST00000557958 HCP5Q6MZN7 132 aa13.51□□□□□ -0.25
LDLR-206ENST00000557958 SIRPDQ9H106 197 aa13.51□□□□□ -0.25
LDLR-206ENST00000557958 HILPDAQ9Y5L2 63 aa13.51□□□□□ -0.25
LDLR-206ENST00000557958 FBN2P35556 2912 aa13.51□□□□□ -0.25
LDLR-206ENST00000557958 CELSR2Q9HCU4 2923 aa13.51□□□□□ -0.25
LDLR-206ENST00000557958 TACC2O95359 2948 aa13.51□□□□□ -0.25
LDLR-206ENST00000557958 IGHV4-61A0A0C4DH41 118 aa13.5□□□□□ -0.25
LDLR-206ENST00000557958 PCP4L1A6NKN8 68 aa13.5□□□□□ -0.25
LDLR-206ENST00000557958 TOX4O94842 621 aa13.5□□□□□ -0.25
LDLR-206ENST00000557958 MOSP00540 346 aa13.5□□□□□ -0.25
LDLR-206ENST00000557958 HOXB4P17483 251 aaPredicted RBP13.5□□□□□ -0.25
LDLR-206ENST00000557958 PAX2Q02962 417 aa13.5□□□□□ -0.25
LDLR-206ENST00000557958 TMEM249Q2WGJ8 235 aa13.5□□□□□ -0.25
LDLR-206ENST00000557958 MIC13Q5XKP0 118 aa13.5□□□□□ -0.25
LDLR-206ENST00000557958 ETFRF1Q6IPR1 90 aa13.5□□□□□ -0.25
LDLR-206ENST00000557958 SLC16A13Q7RTY0 426 aa13.5□□□□□ -0.25
LDLR-206ENST00000557958 TBL2Q9Y4P3 447 aaKnown RBP13.5□□□□□ -0.25
LDLR-206ENST00000557958 SNRNP70P08621 437 aaKnown RBP13.5□□□□□ -0.25
LDLR-206ENST00000557958 MMDQ15546 238 aa13.5□□□□□ -0.25
LDLR-206ENST00000557958 DEFB113Q30KQ7 82 aa13.5□□□□□ -0.25
LDLR-206ENST00000557958 STPG3Q8N7X2 389 aa13.5□□□□□ -0.25
LDLR-206ENST00000557958 ZNF114Q8NC26 417 aa13.5□□□□□ -0.25
LDLR-206ENST00000557958 C2CD4CQ8TF44 421 aa13.5□□□□□ -0.25
LDLR-206ENST00000557958 SSMEM1Q8WWF3 244 aa13.5□□□□□ -0.25
LDLR-206ENST00000557958 SRSF8Q9BRL6 282 aaKnown RBP13.5□□□□□ -0.25
LDLR-206ENST00000557958 RPS10P5Q9NQ39 176 aa13.5□□□□□ -0.25
LDLR-206ENST00000557958 SPG11Q96JI7 2443 aa13.5□□□□□ -0.25
LDLR-206ENST00000557958 CGB1A6NKQ9 187 aa13.49□□□□□ -0.25
LDLR-206ENST00000557958 E7EUB6 86 aa13.49□□□□□ -0.25
LDLR-206ENST00000557958 M0R036 132 aa13.49□□□□□ -0.25
LDLR-206ENST00000557958 CORTO00230 105 aa13.49□□□□□ -0.25
LDLR-206ENST00000557958 NBR2O15453 112 aa13.49□□□□□ -0.25
LDLR-206ENST00000557958 NDUFS6O75380 124 aaKnown RBP13.49□□□□□ -0.25
LDLR-206ENST00000557958 MT-CO2P00403 227 aa13.49□□□□□ -0.25
LDLR-206ENST00000557958 S100A8P05109 93 aa13.49□□□□□ -0.25
LDLR-206ENST00000557958 CNTFRP26992 372 aa13.49□□□□□ -0.25
LDLR-206ENST00000557958 RHOBP62745 196 aa13.49□□□□□ -0.25
LDLR-206ENST00000557958 GAMTQ14353 236 aa13.49□□□□□ -0.25
LDLR-206ENST00000557958 SLC35E3Q7Z769 313 aa13.49□□□□□ -0.25
LDLR-206ENST00000557958 CYB561D1Q8N8Q1 229 aa13.49□□□□□ -0.25
LDLR-206ENST00000557958 NANPQ8TBE9 248 aa13.49□□□□□ -0.25
LDLR-206ENST00000557958 CFHR4Q92496 578 aa13.49□□□□□ -0.25
LDLR-206ENST00000557958 IGLC7A0M8Q6 106 aa13.48□□□□□ -0.25
LDLR-206ENST00000557958 C7orf77A4D0Y5 90 aa13.48□□□□□ -0.25
LDLR-206ENST00000557958 UBE2CO00762 179 aa13.48□□□□□ -0.25
LDLR-206ENST00000557958 YIF1AO95070 293 aa13.48□□□□□ -0.25
LDLR-206ENST00000557958 SMIM6P0DI80 62 aa13.48□□□□□ -0.25
LDLR-206ENST00000557958 PAX1P15863 534 aa13.48□□□□□ -0.25
LDLR-206ENST00000557958 UBE2E1P51965 193 aa13.48□□□□□ -0.25
LDLR-206ENST00000557958 CEBPGP53567 150 aa13.48□□□□□ -0.25
LDLR-206ENST00000557958 GNB1P62873 340 aa13.48□□□□□ -0.25
LDLR-206ENST00000557958 MRGPRG-AS1Q2M3A8 158 aa13.48□□□□□ -0.25
LDLR-206ENST00000557958 LHFPL4Q7Z7J7 247 aa13.48□□□□□ -0.25
LDLR-206ENST00000557958 OR2T10Q8NGZ9 312 aa13.48□□□□□ -0.25
LDLR-206ENST00000557958 C22orf15Q8WYQ4 148 aa13.48□□□□□ -0.25
LDLR-206ENST00000557958 MALSU1Q96EH3 234 aa13.48□□□□□ -0.25
LDLR-206ENST00000557958 NIPSNAP3BQ9BS92 247 aa13.48□□□□□ -0.25
LDLR-206ENST00000557958 C19orf24Q9BVV8 132 aa13.48□□□□□ -0.25
LDLR-206ENST00000557958 FBXL15Q9H469 300 aa13.48□□□□□ -0.25
LDLR-206ENST00000557958 POLR3KQ9Y2Y1 108 aaPredicted RBP13.48□□□□□ -0.25
LDLR-206ENST00000557958 CSMD2Q7Z408 3487 aa13.48□□□□□ -0.25
LDLR-206ENST00000557958 DSCR9P59020 149 aa13.48□□□□□ -0.25
LDLR-206ENST00000557958 MEF2BQ02080 365 aaPredicted RBP13.48□□□□□ -0.25
LDLR-206ENST00000557958 LDLRAD2Q5SZI1 272 aa13.48□□□□□ -0.25
LDLR-206ENST00000557958 ZFP82Q8N141 532 aa13.48□□□□□ -0.25
LDLR-206ENST00000557958 BEX4Q9NWD9 120 aaPredicted RBP13.48□□□□□ -0.25
LDLR-206ENST00000557958 C5orf52A6NGY3 159 aa13.47□□□□□ -0.25
LDLR-206ENST00000557958 VWC2LB2RUY7 222 aa13.47□□□□□ -0.25
LDLR-206ENST00000557958 HMGB3O15347 200 aaKnown RBP13.47□□□□□ -0.25
LDLR-206ENST00000557958 PRR20EP86478 221 aa13.47□□□□□ -0.25
LDLR-206ENST00000557958 PRR20CP86479 221 aa13.47□□□□□ -0.25
LDLR-206ENST00000557958 PRR20DP86480 221 aa13.47□□□□□ -0.25
LDLR-206ENST00000557958 PRR20BP86481 221 aa13.47□□□□□ -0.25
LDLR-206ENST00000557958 PRR20AP86496 221 aa13.47□□□□□ -0.25
LDLR-206ENST00000557958 HES1Q14469 280 aa13.47□□□□□ -0.25
LDLR-206ENST00000557958 SSX2Q16385 188 aa13.47□□□□□ -0.25
LDLR-206ENST00000557958 NPBQ8NG41 125 aa13.47□□□□□ -0.25
LDLR-206ENST00000557958 C1orf159Q96HA4 380 aa13.47□□□□□ -0.25
LDLR-206ENST00000557958 SLC45A2Q9UMX9 530 aa13.47□□□□□ -0.25
LDLR-206ENST00000557958 HELZ2Q9BYK8 2649 aaKnown RBP13.47□□□□□ -0.25
LDLR-206ENST00000557958 TNCP24821 2201 aa13.47□□□□□ -0.25
LDLR-206ENST00000557958 ARHGAP32A7KAX9 2087 aa13.47□□□□□ -0.25
LDLR-206ENST00000557958 CNIH1O95406 144 aa13.46□□□□□ -0.25
LDLR-206ENST00000557958 CXorf1O96002 111 aa13.46□□□□□ -0.25
LDLR-206ENST00000557958 GCSAMLQ5JQS6 135 aa13.46□□□□□ -0.25
LDLR-206ENST00000557958 OR1P1Q8NH06 330 aa13.46□□□□□ -0.25
LDLR-206ENST00000557958 SRSF12Q8WXF0 261 aaKnown RBP13.46□□□□□ -0.25
LDLR-206ENST00000557958 ACY3Q96HD9 319 aa13.46□□□□□ -0.25
LDLR-206ENST00000557958 PUS1Q9Y606 427 aaKnown RBP eCLIP13.46□□□□□ -0.25
LDLR-206ENST00000557958 A0A1W2PRD5 423 aa13.46□□□□□ -0.26
LDLR-206ENST00000557958 A0A1W2PRF3 423 aa13.46□□□□□ -0.26
LDLR-206ENST00000557958 A0A1W2PRM7 423 aa13.46□□□□□ -0.26
LDLR-206ENST00000557958 EIF3GO75821 320 aaKnown RBP eCLIP13.46□□□□□ -0.26
LDLR-206ENST00000557958 NDUFA3O95167 84 aa13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms