RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 ST6GALNAC6Q969X2 333 aa10.29□□□□□ -0.76
SHMT2-229ENST00000557348 FLYWCH2Q96CP2 140 aaKnown RBP10.29□□□□□ -0.76
SHMT2-229ENST00000557348 MRPL20Q9BYC9 149 aaKnown RBP10.29□□□□□ -0.76
SHMT2-229ENST00000557348 WDR61Q9GZS3 305 aaKnown RBP10.29□□□□□ -0.76
SHMT2-229ENST00000557348 SLC39A9Q9NUM3 307 aa10.29□□□□□ -0.76
SHMT2-229ENST00000557348 TCF19Q9Y242 345 aa10.29□□□□□ -0.76
SHMT2-229ENST00000557348 C17orf112F2Z3M2 114 aa10.28□□□□□ -0.76
SHMT2-229ENST00000557348 UPK2O00526 184 aa10.28□□□□□ -0.76
SHMT2-229ENST00000557348 EREGO14944 169 aa10.28□□□□□ -0.76
SHMT2-229ENST00000557348 MPDU1O75352 247 aa10.28□□□□□ -0.76
SHMT2-229ENST00000557348 IL6RP08887 468 aaPredicted RBP10.28□□□□□ -0.76
SHMT2-229ENST00000557348 ZNF25P17030 456 aaPredicted RBP10.28□□□□□ -0.76
SHMT2-229ENST00000557348 USF1P22415 310 aaPredicted RBP10.28□□□□□ -0.76
SHMT2-229ENST00000557348 GPR6P46095 362 aaPredicted RBP10.28□□□□□ -0.76
SHMT2-229ENST00000557348 ADIRFQ15847 76 aa10.28□□□□□ -0.76
SHMT2-229ENST00000557348 VWC2Q2TAL6 325 aa10.28□□□□□ -0.76
SHMT2-229ENST00000557348 OR8G2PQ6IF36 304 aa10.28□□□□□ -0.76
SHMT2-229ENST00000557348 C1orf229Q6ZS94 237 aaPredicted RBP10.28□□□□□ -0.76
SHMT2-229ENST00000557348 C1orf122Q6ZSJ8 110 aa10.28□□□□□ -0.76
SHMT2-229ENST00000557348 ZNF843Q8N446 348 aa10.28□□□□□ -0.76
SHMT2-229ENST00000557348 OR4C12Q96R67 309 aa10.28□□□□□ -0.76
SHMT2-229ENST00000557348 TMEM208Q9BTX3 173 aa10.28□□□□□ -0.76
SHMT2-229ENST00000557348 SSBP3Q9BWW4 388 aaPredicted RBP10.28□□□□□ -0.76
SHMT2-229ENST00000557348 UBTD1Q9HAC8 227 aa10.28□□□□□ -0.76
SHMT2-229ENST00000557348 SMG1Q96Q15 3661 aaKnown RBP10.28□□□□□ -0.76
SHMT2-229ENST00000557348 FASNP49327 2511 aaKnown RBP10.28□□□□□ -0.76
SHMT2-229ENST00000557348 IGHV2-26A0A0B4J1V2 119 aa10.28□□□□□ -0.76
SHMT2-229ENST00000557348 PDE6DO43924 150 aa10.28□□□□□ -0.76
SHMT2-229ENST00000557348 LGALS7P47929 136 aa10.28□□□□□ -0.76
SHMT2-229ENST00000557348 YPEL3P61236 119 aaPredicted RBP10.28□□□□□ -0.76
SHMT2-229ENST00000557348 SELENOTP62341 195 aa10.28□□□□□ -0.76
SHMT2-229ENST00000557348 TMEM183BQ1AE95 376 aa10.28□□□□□ -0.76
SHMT2-229ENST00000557348 HLA-DRB5Q30154 266 aa10.28□□□□□ -0.76
SHMT2-229ENST00000557348 UTF1Q5T230 341 aa10.28□□□□□ -0.76
SHMT2-229ENST00000557348 HAPLN4Q86UW8 402 aa10.28□□□□□ -0.76
SHMT2-229ENST00000557348 C11orf42Q8N5U0 333 aa10.28□□□□□ -0.76
SHMT2-229ENST00000557348 KIR3DL3Q8N743 410 aa10.28□□□□□ -0.76
SHMT2-229ENST00000557348 TAF15Q92804 592 aaKnown RBP eCLIP10.28□□□□□ -0.76
SHMT2-229ENST00000557348 ZDHHC16Q969W1 377 aa10.28□□□□□ -0.76
SHMT2-229ENST00000557348 HARBI1Q96MB7 349 aa10.28□□□□□ -0.76
SHMT2-229ENST00000557348 NABP2Q9BQ15 211 aa10.28□□□□□ -0.76
SHMT2-229ENST00000557348 KCNIP2Q9NS61 270 aa10.28□□□□□ -0.76
SHMT2-229ENST00000557348 PKDREJQ9NTG1 2253 aa10.27□□□□□ -0.76
SHMT2-229ENST00000557348 USF3Q68DE3 2245 aa10.27□□□□□ -0.77
SHMT2-229ENST00000557348 ROS1P08922 2347 aa10.27□□□□□ -0.77
SHMT2-229ENST00000557348 PMS2P5A8MQ11 134 aa10.27□□□□□ -0.77
SHMT2-229ENST00000557348 FNDC10F2Z333 226 aa10.27□□□□□ -0.77
SHMT2-229ENST00000557348 F6UZH7 168 aa10.27□□□□□ -0.77
SHMT2-229ENST00000557348 SNRPCP09234 159 aaKnown RBP10.27□□□□□ -0.77
SHMT2-229ENST00000557348 VDAC2P45880 294 aaPredicted RBP10.27□□□□□ -0.77
SHMT2-229ENST00000557348 TPPP2P59282 170 aa10.27□□□□□ -0.77
SHMT2-229ENST00000557348 RUNX1Q01196 453 aa10.27□□□□□ -0.77
SHMT2-229ENST00000557348 VMA21Q3ZAQ7 101 aa10.27□□□□□ -0.77
SHMT2-229ENST00000557348 TEX43Q6ZNM6 134 aa10.27□□□□□ -0.77
SHMT2-229ENST00000557348 ZNF709Q8N972 641 aa10.27□□□□□ -0.77
SHMT2-229ENST00000557348 PLEKHA3Q9HB20 300 aa10.27□□□□□ -0.77
SHMT2-229ENST00000557348 PXMP4Q9Y6I8 212 aa10.27□□□□□ -0.77
SHMT2-229ENST00000557348 BAHCC1Q9P281 2608 aa10.26□□□□□ -0.77
SHMT2-229ENST00000557348 LOC105371242A0A075B767 164 aa10.26□□□□□ -0.77
SHMT2-229ENST00000557348 TRBV9A0A0B4J1U6 114 aa10.26□□□□□ -0.77
SHMT2-229ENST00000557348 C15orf62A8K5M9 175 aa10.26□□□□□ -0.77
SHMT2-229ENST00000557348 INS-IGF2F8WCM5 200 aa10.26□□□□□ -0.77
SHMT2-229ENST00000557348 IGLV1-47P01700 117 aa10.26□□□□□ -0.77
SHMT2-229ENST00000557348 CEACAM3P40198 252 aa10.26□□□□□ -0.77
SHMT2-229ENST00000557348 PRCDQ00LT1 54 aa10.26□□□□□ -0.77
SHMT2-229ENST00000557348 ARL16Q0P5N6 197 aa10.26□□□□□ -0.77
SHMT2-229ENST00000557348 COL5A1-AS1Q5SY13 56 aa10.26□□□□□ -0.77
SHMT2-229ENST00000557348 TMEM144Q7Z5S9 345 aa10.26□□□□□ -0.77
SHMT2-229ENST00000557348 VKORC1L1Q8N0U8 176 aa10.26□□□□□ -0.77
SHMT2-229ENST00000557348 MS4A10Q96PG2 267 aa10.26□□□□□ -0.77
SHMT2-229ENST00000557348 RNF5Q99942 180 aa10.26□□□□□ -0.77
SHMT2-229ENST00000557348 OR51B2Q9Y5P1 312 aa10.26□□□□□ -0.77
SHMT2-229ENST00000557348 CFAP46Q8IYW2 2715 aa10.26□□□□□ -0.77
SHMT2-229ENST00000557348 DIDO1Q9BTC0 2240 aaKnown RBP10.25□□□□□ -0.77
SHMT2-229ENST00000557348 UBE2L5PA0A1B0GUS4 154 aa10.25□□□□□ -0.77
SHMT2-229ENST00000557348 A0A1W2PN81 502 aa10.25□□□□□ -0.77
SHMT2-229ENST00000557348 SCGB1D1O95968 90 aa10.25□□□□□ -0.77
SHMT2-229ENST00000557348 IGKV1-16P04430 117 aa10.25□□□□□ -0.77
SHMT2-229ENST00000557348 SAA1P0DJI8 122 aaPredicted RBP10.25□□□□□ -0.77
SHMT2-229ENST00000557348 CHRNA7P36544 502 aa10.25□□□□□ -0.77
SHMT2-229ENST00000557348 SLC24A4Q8NFF2 622 aa10.25□□□□□ -0.77
SHMT2-229ENST00000557348 TMEM167AQ8TBQ9 72 aa10.25□□□□□ -0.77
SHMT2-229ENST00000557348 SPOCK3Q9BQ16 436 aa10.25□□□□□ -0.77
SHMT2-229ENST00000557348 COMMD5Q9GZQ3 224 aa10.25□□□□□ -0.77
SHMT2-229ENST00000557348 ONECUT1Q9UBC0 465 aa10.25□□□□□ -0.77
SHMT2-229ENST00000557348 BUB1B-PAK6H3BSN5 160 aa10.25□□□□□ -0.77
SHMT2-229ENST00000557348 ENSAO43768 121 aaKnown RBP10.25□□□□□ -0.77
SHMT2-229ENST00000557348 REG1AP05451 166 aa10.25□□□□□ -0.77
SHMT2-229ENST00000557348 NPY1RP25929 384 aa10.25□□□□□ -0.77
SHMT2-229ENST00000557348 CD1BP29016 333 aa10.25□□□□□ -0.77
SHMT2-229ENST00000557348 RPL15P61313 204 aaKnown RBP10.25□□□□□ -0.77
SHMT2-229ENST00000557348 RPS16P62249 146 aaKnown RBP10.25□□□□□ -0.77
SHMT2-229ENST00000557348 RPL8P62917 257 aaKnown RBP10.25□□□□□ -0.77
SHMT2-229ENST00000557348 ZNF726P1Q15940 193 aa10.25□□□□□ -0.77
SHMT2-229ENST00000557348 LCN15Q6UWW0 184 aa10.25□□□□□ -0.77
SHMT2-229ENST00000557348 OR4B1Q8NGF8 309 aa10.25□□□□□ -0.77
SHMT2-229ENST00000557348 OR2D3Q8NGH3 330 aa10.25□□□□□ -0.77
SHMT2-229ENST00000557348 OR1L8Q8NGR8 309 aa10.25□□□□□ -0.77
SHMT2-229ENST00000557348 PARLQ9H300 379 aa10.25□□□□□ -0.77
SHMT2-229ENST00000557348 FUT9Q9Y231 359 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms