RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 SUB1P53999 127 aaKnown RBP eCLIP10.42□□□□□ -0.74
SHMT2-228ENST00000557302 SYNJ2BPP57105 145 aa10.42□□□□□ -0.74
SHMT2-228ENST00000557302 TATDN3Q17R31 274 aa10.42□□□□□ -0.74
SHMT2-228ENST00000557302 PDLIM3Q53GG5 364 aaPredicted RBP10.42□□□□□ -0.74
SHMT2-228ENST00000557302 OR1S1Q8NH92 325 aa10.42□□□□□ -0.74
SHMT2-228ENST00000557302 COQ8AQ8NI60 647 aa10.42□□□□□ -0.74
SHMT2-228ENST00000557302 MISP3Q96FF7 219 aa10.42□□□□□ -0.74
SHMT2-228ENST00000557302 ELOVL1Q9BW60 279 aa10.42□□□□□ -0.74
SHMT2-228ENST00000557302 NUDT15Q9NV35 164 aa10.42□□□□□ -0.74
SHMT2-228ENST00000557302 TRAV6A0A075B6T7 132 aa10.41□□□□□ -0.74
SHMT2-228ENST00000557302 IGHV3-21A0A0B4J1V1 117 aa10.41□□□□□ -0.74
SHMT2-228ENST00000557302 K7EIM0 57 aa10.41□□□□□ -0.74
SHMT2-228ENST00000557302 GGCTO75223 188 aaKnown RBP10.41□□□□□ -0.74
SHMT2-228ENST00000557302 SAP30O75446 220 aa10.41□□□□□ -0.74
SHMT2-228ENST00000557302 NXPH3O95157 252 aa10.41□□□□□ -0.74
SHMT2-228ENST00000557302 CLEC3BP05452 202 aa10.41□□□□□ -0.74
SHMT2-228ENST00000557302 HOXB5P09067 269 aa10.41□□□□□ -0.74
SHMT2-228ENST00000557302 GPR183P32249 361 aa10.41□□□□□ -0.74
SHMT2-228ENST00000557302 INSL3P51460 131 aa10.41□□□□□ -0.74
SHMT2-228ENST00000557302 TNFRSF9Q07011 255 aa10.41□□□□□ -0.74
SHMT2-228ENST00000557302 ACSM6Q6P461 480 aa10.41□□□□□ -0.74
SHMT2-228ENST00000557302 SCARB1Q8WTV0 552 aa10.41□□□□□ -0.74
SHMT2-228ENST00000557302 HEYLQ9NQ87 328 aaPredicted RBP10.41□□□□□ -0.74
SHMT2-228ENST00000557302 C21orf62Q9NYP8 219 aa10.41□□□□□ -0.74
SHMT2-228ENST00000557302 ZMAT5Q9UDW3 170 aaKnown RBP10.41□□□□□ -0.74
SHMT2-228ENST00000557302 RNASE2P10153 161 aaKnown RBP10.4□□□□□ -0.74
SHMT2-228ENST00000557302 SLC25A6P12236 298 aa10.4□□□□□ -0.74
SHMT2-228ENST00000557302 HTR2BP41595 481 aa10.4□□□□□ -0.74
SHMT2-228ENST00000557302 IFITM3Q01628 133 aa10.4□□□□□ -0.74
SHMT2-228ENST00000557302 EGFEM1PQ0D2K5 195 aa10.4□□□□□ -0.74
SHMT2-228ENST00000557302 GGNBP1Q5YKI7 109 aa10.4□□□□□ -0.74
SHMT2-228ENST00000557302 OR9G4Q8NGQ1 327 aa10.4□□□□□ -0.74
SHMT2-228ENST00000557302 ENKURQ8TC29 256 aa10.4□□□□□ -0.74
SHMT2-228ENST00000557302 PINX1Q96BK5 328 aaKnown RBP10.4□□□□□ -0.74
SHMT2-228ENST00000557302 OR4C12Q96R67 309 aa10.4□□□□□ -0.74
SHMT2-228ENST00000557302 ATP6V0BQ99437 205 aa10.4□□□□□ -0.74
SHMT2-228ENST00000557302 HIPK2Q9H2X6 1198 aa10.4□□□□□ -0.74
SHMT2-228ENST00000557302 HSPB7Q9UBY9 170 aa10.4□□□□□ -0.74
SHMT2-228ENST00000557302 I3L2K1 104 aa10.39□□□□□ -0.75
SHMT2-228ENST00000557302 CORTO00230 105 aa10.39□□□□□ -0.75
SHMT2-228ENST00000557302 TGOLN2O43493 480 aa10.39□□□□□ -0.75
SHMT2-228ENST00000557302 OR2C1O95371 312 aa10.39□□□□□ -0.75
SHMT2-228ENST00000557302 MT-CO2P00403 227 aa10.39□□□□□ -0.75
SHMT2-228ENST00000557302 H2AFB2P0C5Z0 115 aa10.39□□□□□ -0.75
SHMT2-228ENST00000557302 BSXQ3C1V8 233 aa10.39□□□□□ -0.75
SHMT2-228ENST00000557302 Q56UQ5 140 aa10.39□□□□□ -0.75
SHMT2-228ENST00000557302 PLET1Q6UQ28 207 aa10.39□□□□□ -0.75
SHMT2-228ENST00000557302 REC114Q7Z4M0 266 aa10.39□□□□□ -0.75
SHMT2-228ENST00000557302 UBAC2Q8NBM4 344 aa10.39□□□□□ -0.75
SHMT2-228ENST00000557302 BSCL2Q96G97 398 aaPredicted RBP10.39□□□□□ -0.75
SHMT2-228ENST00000557302 ZC4H2Q9NQZ6 224 aa10.39□□□□□ -0.75
SHMT2-228ENST00000557302 OR2T8A6NH00 312 aa10.38□□□□□ -0.75
SHMT2-228ENST00000557302 FAM90A26D6RGX4 464 aa10.38□□□□□ -0.75
SHMT2-228ENST00000557302 PITX3O75364 302 aa10.38□□□□□ -0.75
SHMT2-228ENST00000557302 ADAP1O75689 374 aa10.38□□□□□ -0.75
SHMT2-228ENST00000557302 IFNA21P01568 189 aa10.38□□□□□ -0.75
SHMT2-228ENST00000557302 PRB2P02812 416 aaPredicted RBP10.38□□□□□ -0.75
SHMT2-228ENST00000557302 MFAP4P55083 255 aa10.38□□□□□ -0.75
SHMT2-228ENST00000557302 DEFA1P59665 94 aa10.38□□□□□ -0.75
SHMT2-228ENST00000557302 DEFA3P59666 94 aa10.38□□□□□ -0.75
SHMT2-228ENST00000557302 KRTAP10-11P60412 298 aa10.38□□□□□ -0.75
SHMT2-228ENST00000557302 FAM106AQ4KMX7 169 aa10.38□□□□□ -0.75
SHMT2-228ENST00000557302 PVRIGQ6DKI7 326 aa10.38□□□□□ -0.75
SHMT2-228ENST00000557302 SPSB3Q6PJ21 355 aa10.38□□□□□ -0.75
SHMT2-228ENST00000557302 GPHB5Q86YW7 130 aa10.38□□□□□ -0.75
SHMT2-228ENST00000557302 SLC24A4Q8NFF2 622 aa10.38□□□□□ -0.75
SHMT2-228ENST00000557302 OR52B4Q8NGK2 314 aa10.38□□□□□ -0.75
SHMT2-228ENST00000557302 DTD1Q8TEA8 209 aa10.38□□□□□ -0.75
SHMT2-228ENST00000557302 MITD1Q8WV92 249 aa10.38□□□□□ -0.75
SHMT2-228ENST00000557302 RBKSQ9H477 322 aa10.38□□□□□ -0.75
SHMT2-228ENST00000557302 GAR1Q9NY12 217 aaKnown RBP10.38□□□□□ -0.75
SHMT2-228ENST00000557302 PEMTQ9UBM1 199 aa10.38□□□□□ -0.75
SHMT2-228ENST00000557302 C2orf83Q53S99 150 aa10.37□□□□□ -0.75
SHMT2-228ENST00000557302 NOXA1Q86UR1 476 aa10.37□□□□□ -0.75
SHMT2-228ENST00000557302 ZNF431Q8TF32 576 aaPredicted RBP10.37□□□□□ -0.75
SHMT2-228ENST00000557302 TXN2Q99757 166 aa10.37□□□□□ -0.75
SHMT2-228ENST00000557302 AURKAIP1Q9NWT8 199 aaPredicted RBP10.37□□□□□ -0.75
SHMT2-228ENST00000557302 ZNF320A2RRD8 509 aa10.36□□□□□ -0.75
SHMT2-228ENST00000557302 F8W735 103 aaPredicted RBP10.36□□□□□ -0.75
SHMT2-228ENST00000557302 LGALS9O00182 355 aa10.36□□□□□ -0.75
SHMT2-228ENST00000557302 MED6O75586 246 aa10.36□□□□□ -0.75
SHMT2-228ENST00000557302 IFNA10P01566 189 aa10.36□□□□□ -0.75
SHMT2-228ENST00000557302 IGHV3-48P01763 117 aa10.36□□□□□ -0.75
SHMT2-228ENST00000557302 NPY1RP25929 384 aa10.36□□□□□ -0.75
SHMT2-228ENST00000557302 FCGR2BP31994 310 aaPredicted RBP10.36□□□□□ -0.75
SHMT2-228ENST00000557302 OPRK1P41145 380 aa10.36□□□□□ -0.75
SHMT2-228ENST00000557302 C11orf87Q6NUJ2 197 aa10.36□□□□□ -0.75
SHMT2-228ENST00000557302 IL34Q6ZMJ4 242 aa10.36□□□□□ -0.75
SHMT2-228ENST00000557302 NRARPQ7Z6K4 114 aa10.36□□□□□ -0.75
SHMT2-228ENST00000557302 DUSP18Q8NEJ0 188 aa10.36□□□□□ -0.75
SHMT2-228ENST00000557302 SEC22CQ9BRL7 303 aa10.36□□□□□ -0.75
SHMT2-228ENST00000557302 U3KQ87 197 aa10.36□□□□□ -0.75
SHMT2-228ENST00000557302 PRKDCP78527 4128 aaKnown RBP10.36□□□□□ -0.75
SHMT2-228ENST00000557302 DNAH3Q8TD57 4116 aa10.36□□□□□ -0.75
SHMT2-228ENST00000557302 IGHV3-35A0A0C4DH35 117 aa10.35□□□□□ -0.75
SHMT2-228ENST00000557302 RPS10-NUDT3A0A1W2PQS6 291 aa10.35□□□□□ -0.75
SHMT2-228ENST00000557302 NUPL2O15504 423 aaKnown RBP10.35□□□□□ -0.75
SHMT2-228ENST00000557302 GNG7O60262 68 aa10.35□□□□□ -0.75
SHMT2-228ENST00000557302 CSN3P07498 182 aa10.35□□□□□ -0.75
SHMT2-228ENST00000557302 NPBWR1P48145 328 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms