RNA–Protein interactions for RNA: ENST00000555854.1

VIPAS39-207, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 444 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-207ENST00000555854 SLC38A6Q8IZM9 456 aa6.93□□□□□ -1.3
VIPAS39-207ENST00000555854 OR2C3Q8N628 320 aa6.93□□□□□ -1.3
VIPAS39-207ENST00000555854 ZNF114Q8NC26 417 aa6.93□□□□□ -1.3
VIPAS39-207ENST00000555854 BSCL2Q96G97 398 aaPredicted RBP6.93□□□□□ -1.3
VIPAS39-207ENST00000555854 TP53RKQ96S44 253 aa6.93□□□□□ -1.3
VIPAS39-207ENST00000555854 C21orf62Q9NYP8 219 aa6.93□□□□□ -1.3
VIPAS39-207ENST00000555854 THYN1Q9P016 225 aa6.93□□□□□ -1.3
VIPAS39-207ENST00000555854 EXTL2Q9UBQ6 330 aa6.93□□□□□ -1.3
VIPAS39-207ENST00000555854 MTFP1Q9UDX5 166 aa6.93□□□□□ -1.3
VIPAS39-207ENST00000555854 PRNDQ9UKY0 176 aa6.93□□□□□ -1.3
VIPAS39-207ENST00000555854 FAM25AB3EWG3 89 aa6.92□□□□□ -1.3
VIPAS39-207ENST00000555854 FAM25CB3EWG5 89 aa6.92□□□□□ -1.3
VIPAS39-207ENST00000555854 FAM25GB3EWG6 89 aa6.92□□□□□ -1.3
VIPAS39-207ENST00000555854 NDUFA4O00483 81 aa6.92□□□□□ -1.3
VIPAS39-207ENST00000555854 ZNF207O43670 478 aaKnown RBP6.92□□□□□ -1.3
VIPAS39-207ENST00000555854 IGHV3-48P01763 117 aa6.92□□□□□ -1.3
VIPAS39-207ENST00000555854 CD74P04233 296 aa6.92□□□□□ -1.3
VIPAS39-207ENST00000555854 CTSGP08311 255 aa6.92□□□□□ -1.3
VIPAS39-207ENST00000555854 SPINK9Q5DT21 86 aa6.92□□□□□ -1.3
VIPAS39-207ENST00000555854 FAAP20Q6NZ36 180 aa6.92□□□□□ -1.3
VIPAS39-207ENST00000555854 OR52B4Q8NGK2 314 aa6.92□□□□□ -1.3
VIPAS39-207ENST00000555854 OR1P1Q8NH06 330 aa6.92□□□□□ -1.3
VIPAS39-207ENST00000555854 CHAC2Q8WUX2 184 aa6.92□□□□□ -1.3
VIPAS39-207ENST00000555854 MARC2Q969Z3 335 aa6.92□□□□□ -1.3
VIPAS39-207ENST00000555854 ATP6V0BQ99437 205 aa6.92□□□□□ -1.3
VIPAS39-207ENST00000555854 DAZ1Q9NQZ3 744 aaKnown RBP6.92□□□□□ -1.3
VIPAS39-207ENST00000555854 MRPL27Q9P0M9 148 aaKnown RBP6.92□□□□□ -1.3
VIPAS39-207ENST00000555854 RABL2AQ9UBK7 228 aaPredicted RBP6.92□□□□□ -1.3
VIPAS39-207ENST00000555854 RABL2BQ9UNT1 228 aa6.92□□□□□ -1.3
VIPAS39-207ENST00000555854 UFC1Q9Y3C8 167 aa6.92□□□□□ -1.3
VIPAS39-207ENST00000555854 HECTD4Q9Y4D8 3996 aa6.92□□□□□ -1.3
VIPAS39-207ENST00000555854 TRAV25A0A0B4J276 109 aa6.91□□□□□ -1.3
VIPAS39-207ENST00000555854 A0A0B4J293 547 aa6.91□□□□□ -1.3
VIPAS39-207ENST00000555854 TSPAN4O14817 238 aa6.91□□□□□ -1.3
VIPAS39-207ENST00000555854 SNAPC5O75971 98 aa6.91□□□□□ -1.3
VIPAS39-207ENST00000555854 MT-CO2P00403 227 aa6.91□□□□□ -1.3
VIPAS39-207ENST00000555854 PIGPP57054 158 aa6.91□□□□□ -1.3
VIPAS39-207ENST00000555854 EWSR1Q01844 656 aaKnown RBP eCLIP6.91□□□□□ -1.3
VIPAS39-207ENST00000555854 RNASE10Q5GAN6 216 aaKnown RBP6.91□□□□□ -1.3
VIPAS39-207ENST00000555854 MZT2AQ6P582 158 aa6.91□□□□□ -1.3
VIPAS39-207ENST00000555854 SPSB3Q6PJ21 355 aa6.91□□□□□ -1.3
VIPAS39-207ENST00000555854 SLC16A13Q7RTY0 426 aa6.91□□□□□ -1.3
VIPAS39-207ENST00000555854 CCDC190Q86UF4 302 aa6.91□□□□□ -1.3
VIPAS39-207ENST00000555854 ARRDC1Q8N5I2 433 aa6.91□□□□□ -1.3
VIPAS39-207ENST00000555854 UBAC2Q8NBM4 344 aa6.91□□□□□ -1.3
VIPAS39-207ENST00000555854 OR1L6Q8NGR2 347 aa6.91□□□□□ -1.3
VIPAS39-207ENST00000555854 LHFPL5Q8TAF8 219 aa6.91□□□□□ -1.3
VIPAS39-207ENST00000555854 SPAG8Q99932 426 aaPredicted RBP6.91□□□□□ -1.3
VIPAS39-207ENST00000555854 OVOL2Q9BRP0 275 aa6.91□□□□□ -1.3
VIPAS39-207ENST00000555854 GGTLC1Q9BX51 225 aa6.91□□□□□ -1.3
VIPAS39-207ENST00000555854 C5orf66Q9H5L9 145 aa6.91□□□□□ -1.3
VIPAS39-207ENST00000555854 MRPL36Q9P0J6 103 aaKnown RBP6.91□□□□□ -1.3
VIPAS39-207ENST00000555854 UBQLN2Q9UHD9 624 aa6.91□□□□□ -1.3
VIPAS39-207ENST00000555854 HERC2O95714 4834 aa6.9□□□□□ -1.3
VIPAS39-207ENST00000555854 CTDSP2O14595 271 aa6.9□□□□□ -1.3
VIPAS39-207ENST00000555854 IFNA6P05013 189 aa6.9□□□□□ -1.3
VIPAS39-207ENST00000555854 PGAM2P15259 253 aa6.9□□□□□ -1.3
VIPAS39-207ENST00000555854 TBPP20226 339 aa6.9□□□□□ -1.3
VIPAS39-207ENST00000555854 UCP1P25874 307 aa6.9□□□□□ -1.3
VIPAS39-207ENST00000555854 FCGR2BP31994 310 aaPredicted RBP6.9□□□□□ -1.3
VIPAS39-207ENST00000555854 HSPE1P61604 102 aaKnown RBP6.9□□□□□ -1.3
VIPAS39-207ENST00000555854 SP6Q3SY56 376 aa6.9□□□□□ -1.3
VIPAS39-207ENST00000555854 Q56UQ5 140 aa6.9□□□□□ -1.3
VIPAS39-207ENST00000555854 PVRIGQ6DKI7 326 aa6.9□□□□□ -1.3
VIPAS39-207ENST00000555854 LPCAT3Q6P1A2 487 aa6.9□□□□□ -1.3
VIPAS39-207ENST00000555854 H2BFWTQ7Z2G1 175 aa6.9□□□□□ -1.3
VIPAS39-207ENST00000555854 OR13C8Q8NGS7 320 aa6.9□□□□□ -1.3
VIPAS39-207ENST00000555854 MISP3Q96FF7 219 aa6.9□□□□□ -1.3
VIPAS39-207ENST00000555854 ZNF486Q96H40 463 aaPredicted RBP6.9□□□□□ -1.3
VIPAS39-207ENST00000555854 OR10C1Q96KK4 312 aa6.9□□□□□ -1.3
VIPAS39-207ENST00000555854 TMEM56Q96MV1 263 aa6.9□□□□□ -1.3
VIPAS39-207ENST00000555854 FAM210AQ96ND0 272 aa6.9□□□□□ -1.3
VIPAS39-207ENST00000555854 C20orf24Q9BUV8 137 aa6.9□□□□□ -1.3
VIPAS39-207ENST00000555854 C6orf62Q9GZU0 229 aaPredicted RBP6.9□□□□□ -1.3
VIPAS39-207ENST00000555854 FKBP11Q9NYL4 201 aa6.9□□□□□ -1.3
VIPAS39-207ENST00000555854 DNAH2Q9P225 4427 aa6.89□□□□□ -1.31
VIPAS39-207ENST00000555854 IGHV3-49A0A0A0MS15 119 aa6.89□□□□□ -1.31
VIPAS39-207ENST00000555854 IGHV7-4-1A0A0J9YVY3 117 aa6.89□□□□□ -1.31
VIPAS39-207ENST00000555854 C15orf62A8K5M9 175 aa6.89□□□□□ -1.31
VIPAS39-207ENST00000555854 INS-IGF2F8WCM5 200 aa6.89□□□□□ -1.31
VIPAS39-207ENST00000555854 GABARAPH6UMI1 98 aa6.89□□□□□ -1.31
VIPAS39-207ENST00000555854 K7EMT4 169 aa6.89□□□□□ -1.31
VIPAS39-207ENST00000555854 CHEK1O14757 476 aa6.89□□□□□ -1.31
VIPAS39-207ENST00000555854 ST8SIA3O43173 380 aa6.89□□□□□ -1.31
VIPAS39-207ENST00000555854 CTSDP07339 412 aaPredicted RBP6.89□□□□□ -1.31
VIPAS39-207ENST00000555854 RNASE2P10153 161 aaKnown RBP6.89□□□□□ -1.31
VIPAS39-207ENST00000555854 ZNF124Q15973 351 aa6.89□□□□□ -1.31
VIPAS39-207ENST00000555854 Q6ZRM9 215 aa6.89□□□□□ -1.31
VIPAS39-207ENST00000555854 RBPMS2Q6ZRY4 209 aaKnown RBP6.89□□□□□ -1.31
VIPAS39-207ENST00000555854 TMEM229BQ8NBD8 167 aa6.89□□□□□ -1.31
VIPAS39-207ENST00000555854 OR4A16Q8NH70 328 aa6.89□□□□□ -1.31
VIPAS39-207ENST00000555854 MARCH1Q8TCQ1 289 aa6.89□□□□□ -1.31
VIPAS39-207ENST00000555854 SMIM4Q8WVI0 70 aa6.89□□□□□ -1.31
VIPAS39-207ENST00000555854 RNF2Q99496 336 aa6.89□□□□□ -1.31
VIPAS39-207ENST00000555854 FNDC4Q9H6D8 234 aaPredicted RBP6.89□□□□□ -1.31
VIPAS39-207ENST00000555854 IGHV3OR16-13A0A075B7E8 117 aa6.88□□□□□ -1.31
VIPAS39-207ENST00000555854 LOC102724200A0A096LPH7 203 aaPredicted RBP6.88□□□□□ -1.31
VIPAS39-207ENST00000555854 IGHV3-74A0A0B4J1X5 117 aa6.88□□□□□ -1.31
VIPAS39-207ENST00000555854 C3orf85A0A1B0GTC6 90 aa6.88□□□□□ -1.31
VIPAS39-207ENST00000555854 CYB5BO43169 146 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms