RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 ODAMA1E959 279 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 MBD3L4A6NDZ8 208 aaPredicted RBP10.07□□□□□ -0.8
SHMT2-207ENST00000553837 MBD3L3A6NE82 208 aaPredicted RBP10.07□□□□□ -0.8
SHMT2-207ENST00000553837 MBD3L5A6NJ08 208 aaPredicted RBP10.07□□□□□ -0.8
SHMT2-207ENST00000553837 C15orf65H3BRN8 121 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 PROP1O75360 226 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 CA2P00918 260 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 FRMD6-AS1P0C7T7 363 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 STAG3L2P0CL84 134 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 STAG3L3P0CL85 134 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 RPS16P62249 146 aaKnown RBP10.07□□□□□ -0.8
SHMT2-207ENST00000553837 RHOBP62745 196 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 CX3CL1P78423 397 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 OR4A47Q6IF82 309 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 IGF2-ASQ6U949 168 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 TMEM136Q6ZRR5 245 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 MUC15Q8N387 334 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 Q8N7P7 452 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 ZBTB34Q8NCN2 500 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 MBD3L2Q8NHZ7 208 aaPredicted RBP10.07□□□□□ -0.8
SHMT2-207ENST00000553837 PLPPR2Q96GM1 343 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 RCHY1Q96PM5 261 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 V9GYV3 84 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 BSNQ9UPA5 3926 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 IGHV3OR15-7A0A075B7D8 119 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 GAGE12BA1L429 117 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 ZNF891A8MT65 544 aaPredicted RBP10.07□□□□□ -0.8
SHMT2-207ENST00000553837 PRDX2P32119 198 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 OPRK1P41145 380 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 RIPPLY3P57055 190 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 RPL31P62899 125 aaKnown RBP10.07□□□□□ -0.8
SHMT2-207ENST00000553837 EDDM3AQ14507 147 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 LTC4SQ16873 150 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 UTF1Q5T230 341 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 TSKUQ8WUA8 353 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 EAF1Q96JC9 268 aaPredicted RBP10.07□□□□□ -0.8
SHMT2-207ENST00000553837 DUSP13Q9UII6 198 aa10.07□□□□□ -0.8
SHMT2-207ENST00000553837 G3V4G9 280 aa10.06□□□□□ -0.8
SHMT2-207ENST00000553837 C22orf34Q6ZV56 151 aa10.06□□□□□ -0.8
SHMT2-207ENST00000553837 ZNF439Q8NDP4 499 aa10.06□□□□□ -0.8
SHMT2-207ENST00000553837 OR4P4Q8NGL7 312 aa10.06□□□□□ -0.8
SHMT2-207ENST00000553837 ZDHHC16Q969W1 377 aa10.06□□□□□ -0.8
SHMT2-207ENST00000553837 CLEC5AQ9NY25 188 aa10.06□□□□□ -0.8
SHMT2-207ENST00000553837 RAB29O14966 203 aa10.05□□□□□ -0.8
SHMT2-207ENST00000553837 OR7C2O60412 319 aa10.05□□□□□ -0.8
SHMT2-207ENST00000553837 MT-CO2P00403 227 aa10.05□□□□□ -0.8
SHMT2-207ENST00000553837 HLA-DQA1P01909 254 aa10.05□□□□□ -0.8
SHMT2-207ENST00000553837 OR10J4P0C629 311 aa10.05□□□□□ -0.8
SHMT2-207ENST00000553837 LGALS7P47929 136 aa10.05□□□□□ -0.8
SHMT2-207ENST00000553837 KIAA1644Q3SXP7 199 aa10.05□□□□□ -0.8
SHMT2-207ENST00000553837 SPINK9Q5DT21 86 aa10.05□□□□□ -0.8
SHMT2-207ENST00000553837 ATOH7Q8N100 152 aa10.05□□□□□ -0.8
SHMT2-207ENST00000553837 ZADH2Q8N4Q0 377 aa10.05□□□□□ -0.8
SHMT2-207ENST00000553837 C11orf52Q96A22 123 aa10.05□□□□□ -0.8
SHMT2-207ENST00000553837 TMEM186Q96B77 213 aa10.05□□□□□ -0.8
SHMT2-207ENST00000553837 YTHDF2Q9Y5A9 579 aaKnown RBP10.05□□□□□ -0.8
SHMT2-207ENST00000553837 C22orf46C9J442 243 aa10.05□□□□□ -0.8
SHMT2-207ENST00000553837 M0R1B8 84 aa10.05□□□□□ -0.8
SHMT2-207ENST00000553837 RBMXL2O75526 392 aaKnown RBP10.05□□□□□ -0.8
SHMT2-207ENST00000553837 CLDN14O95500 239 aa10.05□□□□□ -0.8
SHMT2-207ENST00000553837 AMY1AP04745 511 aa10.05□□□□□ -0.8
SHMT2-207ENST00000553837 SRIP30626 198 aa10.05□□□□□ -0.8
SHMT2-207ENST00000553837 SELENOVP59797 346 aa10.05□□□□□ -0.8
SHMT2-207ENST00000553837 PDLIM3Q53GG5 364 aaPredicted RBP10.05□□□□□ -0.8
SHMT2-207ENST00000553837 FAM201AQ5SY85 155 aa10.05□□□□□ -0.8
SHMT2-207ENST00000553837 H2BFWTQ7Z2G1 175 aa10.05□□□□□ -0.8
SHMT2-207ENST00000553837 GCSAMQ8N6F7 178 aa10.05□□□□□ -0.8
SHMT2-207ENST00000553837 OR4F17Q8NGA8 305 aa10.05□□□□□ -0.8
SHMT2-207ENST00000553837 NINJ1Q92982 152 aa10.05□□□□□ -0.8
SHMT2-207ENST00000553837 CLEC7AQ9BXN2 247 aa10.05□□□□□ -0.8
SHMT2-207ENST00000553837 SERTM2A0A1B0GWG4 89 aa10.04□□□□□ -0.8
SHMT2-207ENST00000553837 SRRM5B3KS81 715 aa10.04□□□□□ -0.8
SHMT2-207ENST00000553837 IGHV3-13P01766 116 aa10.04□□□□□ -0.8
SHMT2-207ENST00000553837 IGHV3-7P01780 117 aa10.04□□□□□ -0.8
SHMT2-207ENST00000553837 NTF3P20783 257 aa10.04□□□□□ -0.8
SHMT2-207ENST00000553837 MC5RP33032 325 aa10.04□□□□□ -0.8
SHMT2-207ENST00000553837 CATR1Q13166 79 aa10.04□□□□□ -0.8
SHMT2-207ENST00000553837 S100A7AQ86SG5 101 aa10.04□□□□□ -0.8
SHMT2-207ENST00000553837 FAM19A2Q8N3H0 131 aa10.04□□□□□ -0.8
SHMT2-207ENST00000553837 ATMQ13315 3056 aa10.04□□□□□ -0.8
SHMT2-207ENST00000553837 C15orf62A8K5M9 175 aa10.04□□□□□ -0.8
SHMT2-207ENST00000553837 BMPR1BO00238 502 aa10.04□□□□□ -0.8
SHMT2-207ENST00000553837 LINC00869P0C866 280 aa10.04□□□□□ -0.8
SHMT2-207ENST00000553837 GCHFRP30047 84 aa10.04□□□□□ -0.8
SHMT2-207ENST00000553837 IGFL3Q6UXB1 125 aa10.04□□□□□ -0.8
SHMT2-207ENST00000553837 FAM169BQ8N8A8 192 aa10.04□□□□□ -0.8
SHMT2-207ENST00000553837 ZNRF1Q8ND25 227 aa10.04□□□□□ -0.8
SHMT2-207ENST00000553837 OR2V2Q96R30 315 aa10.04□□□□□ -0.8
SHMT2-207ENST00000553837 H0YJW9 148 aa10.03□□□□□ -0.8
SHMT2-207ENST00000553837 RRHO14718 337 aa10.03□□□□□ -0.8
SHMT2-207ENST00000553837 SPINK4O60575 86 aa10.03□□□□□ -0.8
SHMT2-207ENST00000553837 APCSP02743 223 aa10.03□□□□□ -0.8
SHMT2-207ENST00000553837 ZNF134P52741 427 aa10.03□□□□□ -0.8
SHMT2-207ENST00000553837 C1orf229Q6ZS94 237 aaPredicted RBP10.03□□□□□ -0.8
SHMT2-207ENST00000553837 MOGAT3Q86VF5 341 aa10.03□□□□□ -0.8
SHMT2-207ENST00000553837 FAM90A1Q86YD7 464 aa10.03□□□□□ -0.8
SHMT2-207ENST00000553837 RBMXL3Q8N7X1 1067 aaKnown RBP10.03□□□□□ -0.8
SHMT2-207ENST00000553837 Q8TCH9 128 aa10.03□□□□□ -0.8
SHMT2-207ENST00000553837 OSTCQ9NRP0 149 aa10.03□□□□□ -0.8
SHMT2-207ENST00000553837 ZFHX2Q9C0A1 2572 aaPredicted RBP10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms