RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 OR4C12Q96R67 309 aa7.48□□□□□ -1.21
LIMA1-211ENST00000552338 HINT2Q9BX68 163 aa7.48□□□□□ -1.21
LIMA1-211ENST00000552338 THYN1Q9P016 225 aa7.48□□□□□ -1.21
LIMA1-211ENST00000552338 IGSF23A1L1A6 192 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 CLPSL1A2RUU4 121 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 FAM24AA6NFZ4 105 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 FAM223BA6NKX1 122 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 I3L2K1 104 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 PFDN1O60925 122 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 NXPH3O95157 252 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 IFNA10P01566 189 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 RPL12P30050 165 aaKnown RBP7.47□□□□□ -1.21
LIMA1-211ENST00000552338 S100A11P31949 105 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 SLC35B1P78383 322 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 DLK1P80370 383 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 CD69Q07108 199 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 SPINK9Q5DT21 86 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 C9orf152Q5JTZ5 239 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 FAM209BQ5JX69 171 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 TEX38Q6PEX7 206 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 HAPLN4Q86UW8 402 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 PRIMA1Q86XR5 153 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 FAM223AQ8IWN6 122 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 NECAP1Q8NC96 275 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 TMEM116Q8NCL8 245 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 OR10P1Q8NGE3 313 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 VN1R17PQ8TDU5 208 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 ABHD5Q8WTS1 349 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 PINX1Q96BK5 328 aaKnown RBP7.47□□□□□ -1.21
LIMA1-211ENST00000552338 USMG5Q96IX5 58 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 NOL4LQ96MY1 436 aaPredicted RBP7.47□□□□□ -1.21
LIMA1-211ENST00000552338 TXN2Q99757 166 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 PARD6GQ9BYG4 376 aaPredicted RBP7.47□□□□□ -1.21
LIMA1-211ENST00000552338 HSPB11Q9Y547 144 aa7.47□□□□□ -1.21
LIMA1-211ENST00000552338 A0A0D9SG52 128 aa7.46□□□□□ -1.22
LIMA1-211ENST00000552338 PSMB11A5LHX3 300 aa7.46□□□□□ -1.22
LIMA1-211ENST00000552338 K7EIM0 57 aa7.46□□□□□ -1.22
LIMA1-211ENST00000552338 TAAR5O14804 337 aa7.46□□□□□ -1.22
LIMA1-211ENST00000552338 RAB9AP51151 201 aa7.46□□□□□ -1.22
LIMA1-211ENST00000552338 EWSR1Q01844 656 aaKnown RBP eCLIP7.46□□□□□ -1.22
LIMA1-211ENST00000552338 NHLH2Q02577 135 aa7.46□□□□□ -1.22
LIMA1-211ENST00000552338 ARL16Q0P5N6 197 aa7.46□□□□□ -1.22
LIMA1-211ENST00000552338 FOXL1Q12952 345 aa7.46□□□□□ -1.22
LIMA1-211ENST00000552338 ECSCRQ19T08 205 aa7.46□□□□□ -1.22
LIMA1-211ENST00000552338 ETFRF1Q6IPR1 90 aa7.46□□□□□ -1.22
LIMA1-211ENST00000552338 ETV3LQ6ZN32 361 aa7.46□□□□□ -1.22
LIMA1-211ENST00000552338 KCNRGQ8N5I3 272 aa7.46□□□□□ -1.22
LIMA1-211ENST00000552338 OR5T1Q8NG75 326 aa7.46□□□□□ -1.22
LIMA1-211ENST00000552338 DCUN1D4Q92564 292 aa7.46□□□□□ -1.22
LIMA1-211ENST00000552338 CXorf58Q96LI9 332 aa7.46□□□□□ -1.22
LIMA1-211ENST00000552338 FNDC4Q9H6D8 234 aaPredicted RBP7.46□□□□□ -1.22
LIMA1-211ENST00000552338 A0A0G2JLM5 398 aa7.45□□□□□ -1.22
LIMA1-211ENST00000552338 RPS10-NUDT3A0A1W2PQS6 291 aa7.45□□□□□ -1.22
LIMA1-211ENST00000552338 SMLR1H3BR10 107 aa7.45□□□□□ -1.22
LIMA1-211ENST00000552338 REG1AP05451 166 aa7.45□□□□□ -1.22
LIMA1-211ENST00000552338 OR8U8P0C7N1 319 aa7.45□□□□□ -1.22
LIMA1-211ENST00000552338 METTL15P1P0C7V9 234 aa7.45□□□□□ -1.22
LIMA1-211ENST00000552338 CAV2P51636 162 aa7.45□□□□□ -1.22
LIMA1-211ENST00000552338 HBG1P69891 147 aa7.45□□□□□ -1.22
LIMA1-211ENST00000552338 HBG2P69892 147 aa7.45□□□□□ -1.22
LIMA1-211ENST00000552338 RUNX1Q01196 453 aa7.45□□□□□ -1.22
LIMA1-211ENST00000552338 TMEM95Q3KNT9 176 aa7.45□□□□□ -1.22
LIMA1-211ENST00000552338 LGALSLQ3ZCW2 172 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-211ENST00000552338 ZFP69Q49AA0 526 aa7.45□□□□□ -1.22
LIMA1-211ENST00000552338 SLC25A24Q6NUK1 477 aa7.45□□□□□ -1.22
LIMA1-211ENST00000552338 TMEM144Q7Z5S9 345 aa7.45□□□□□ -1.22
LIMA1-211ENST00000552338 STX12Q86Y82 276 aa7.45□□□□□ -1.22
LIMA1-211ENST00000552338 KLHDC1Q8N7A1 406 aa7.45□□□□□ -1.22
LIMA1-211ENST00000552338 INO80EQ8NBZ0 244 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-211ENST00000552338 OR4X1Q8NH49 305 aa7.45□□□□□ -1.22
LIMA1-211ENST00000552338 UBE2E2Q96LR5 201 aa7.45□□□□□ -1.22
LIMA1-211ENST00000552338 MFFQ9GZY8 342 aa7.45□□□□□ -1.22
LIMA1-211ENST00000552338 NPVFQ9HCQ7 196 aa7.45□□□□□ -1.22
LIMA1-211ENST00000552338 LINC00527Q9UJ94 153 aa7.45□□□□□ -1.22
LIMA1-211ENST00000552338 LSM4Q9Y4Z0 139 aaKnown RBP7.45□□□□□ -1.22
LIMA1-211ENST00000552338 TEP1Q99973 2627 aaKnown RBP7.44□□□□□ -1.22
LIMA1-211ENST00000552338 FXYD6-FXYD2A0A087WZ82 144 aa7.44□□□□□ -1.22
LIMA1-211ENST00000552338 TRBV7-1A0A0A6YYK4 115 aa7.44□□□□□ -1.22
LIMA1-211ENST00000552338 F8W735 103 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-211ENST00000552338 H3BP45 60 aa7.44□□□□□ -1.22
LIMA1-211ENST00000552338 NDUFB8O95169 186 aa7.44□□□□□ -1.22
LIMA1-211ENST00000552338 MT-CO2P00403 227 aa7.44□□□□□ -1.22
LIMA1-211ENST00000552338 IFNA4P05014 189 aa7.44□□□□□ -1.22
LIMA1-211ENST00000552338 DEFA4P12838 97 aa7.44□□□□□ -1.22
LIMA1-211ENST00000552338 CXCL2P19875 107 aa7.44□□□□□ -1.22
LIMA1-211ENST00000552338 NUP62P37198 522 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-211ENST00000552338 CDX1P47902 265 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-211ENST00000552338 ARSJQ5FYB0 599 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-211ENST00000552338 LAMTOR1Q6IAA8 161 aa7.44□□□□□ -1.22
LIMA1-211ENST00000552338 ZNF343Q6P1L6 599 aa7.44□□□□□ -1.22
LIMA1-211ENST00000552338 CENPVQ7Z7K6 275 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-211ENST00000552338 ZNF491Q8N8L2 437 aa7.44□□□□□ -1.22
LIMA1-211ENST00000552338 THAP8Q8NA92 274 aa7.44□□□□□ -1.22
LIMA1-211ENST00000552338 SCARB1Q8WTV0 552 aa7.44□□□□□ -1.22
LIMA1-211ENST00000552338 GAR1Q9NY12 217 aaKnown RBP7.44□□□□□ -1.22
LIMA1-211ENST00000552338 RNF114Q9Y508 228 aa7.44□□□□□ -1.22
LIMA1-211ENST00000552338 TRAV30A0A087WSZ9 112 aa7.43□□□□□ -1.22
LIMA1-211ENST00000552338 ARPC5O15511 151 aa7.43□□□□□ -1.22
LIMA1-211ENST00000552338 MPDU1O75352 247 aa7.43□□□□□ -1.22
LIMA1-211ENST00000552338 CLN5O75503 358 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms