RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 MYO16Q9Y6X6 1858 aa3.03□□□□□ -1.93
LIMA1-210ENST00000552045 PPIP5K1Q6PFW1 1433 aa3.02□□□□□ -1.93
LIMA1-210ENST00000552045 A0A1W2PQD3 144 aa3.02□□□□□ -1.93
LIMA1-210ENST00000552045 TXNDC9O14530 226 aa3.02□□□□□ -1.93
LIMA1-210ENST00000552045 HAND1O96004 215 aa3.02□□□□□ -1.93
LIMA1-210ENST00000552045 ZNF728P0DKX0 622 aa3.02□□□□□ -1.93
LIMA1-210ENST00000552045 GABRA4P48169 554 aa3.02□□□□□ -1.93
LIMA1-210ENST00000552045 RAB13P51153 203 aa3.02□□□□□ -1.93
LIMA1-210ENST00000552045 FXYD7P58549 80 aa3.02□□□□□ -1.93
LIMA1-210ENST00000552045 SNRPD2P62316 118 aaKnown RBP3.02□□□□□ -1.93
LIMA1-210ENST00000552045 FOXF1Q12946 379 aa3.02□□□□□ -1.93
LIMA1-210ENST00000552045 SMARCD3Q6STE5 483 aa3.02□□□□□ -1.93
LIMA1-210ENST00000552045 SSX8Q7RTT4 187 aa3.02□□□□□ -1.93
LIMA1-210ENST00000552045 TBC1D19Q8N5T2 526 aa3.02□□□□□ -1.93
LIMA1-210ENST00000552045 ZNF675Q8TD23 568 aa3.02□□□□□ -1.93
LIMA1-210ENST00000552045 ZNF471Q9BX82 626 aaPredicted RBP3.02□□□□□ -1.93
LIMA1-210ENST00000552045 ULBP3Q9BZM4 244 aa3.02□□□□□ -1.93
LIMA1-210ENST00000552045 IL20Q9NYY1 176 aa3.02□□□□□ -1.93
LIMA1-210ENST00000552045 PSORS1C2Q9UIG4 136 aa3.02□□□□□ -1.93
LIMA1-210ENST00000552045 PRELID3BQ9Y3B1 194 aa3.02□□□□□ -1.93
LIMA1-210ENST00000552045 FAM215AQ9Y5M1 114 aa3.02□□□□□ -1.93
LIMA1-210ENST00000552045 ABCC6O95255 1503 aa3.02□□□□□ -1.93
LIMA1-210ENST00000552045 LTBP2Q14767 1821 aa3.02□□□□□ -1.93
LIMA1-210ENST00000552045 ANKRD36BQ8N2N9 1353 aa3.01□□□□□ -1.93
LIMA1-210ENST00000552045 TMEM269A0A1B0GVZ9 245 aa3.01□□□□□ -1.93
LIMA1-210ENST00000552045 C11orf86A6NJI1 115 aa3.01□□□□□ -1.93
LIMA1-210ENST00000552045 GNRH2O43555 120 aa3.01□□□□□ -1.93
LIMA1-210ENST00000552045 NSA2O95478 260 aaKnown RBP3.01□□□□□ -1.93
LIMA1-210ENST00000552045 HLA-DRB1P01911 266 aa3.01□□□□□ -1.93
LIMA1-210ENST00000552045 SRP19P09132 144 aaKnown RBP3.01□□□□□ -1.93
LIMA1-210ENST00000552045 BLVRBP30043 206 aaPredicted RBP3.01□□□□□ -1.93
LIMA1-210ENST00000552045 RPL5P46777 297 aaKnown RBP3.01□□□□□ -1.93
LIMA1-210ENST00000552045 TMED2Q15363 201 aa3.01□□□□□ -1.93
LIMA1-210ENST00000552045 GRK1Q15835 563 aa3.01□□□□□ -1.93
LIMA1-210ENST00000552045 PAQR5Q9NXK6 330 aaPredicted RBP3.01□□□□□ -1.93
LIMA1-210ENST00000552045 N4BP2Q86UW6 1770 aaPredicted RBP3.01□□□□□ -1.93
LIMA1-210ENST00000552045 ANKARQ7Z5J8 1434 aa3.01□□□□□ -1.93
LIMA1-210ENST00000552045 ZDBF2Q9HCK1 2354 aa3.01□□□□□ -1.93
LIMA1-210ENST00000552045 RALGAPA2Q2PPJ7 1873 aa3.01□□□□□ -1.93
LIMA1-210ENST00000552045 EIF3AQ14152 1382 aaKnown RBP3□□□□□ -1.93
LIMA1-210ENST00000552045 SLX4Q8IY92 1834 aa3□□□□□ -1.93
LIMA1-210ENST00000552045 ANKRD11Q6UB99 2663 aaPredicted RBP3□□□□□ -1.93
LIMA1-210ENST00000552045 AKAP12Q02952 1782 aa3□□□□□ -1.93
LIMA1-210ENST00000552045 TIAM2Q8IVF5 1701 aa3□□□□□ -1.93
LIMA1-210ENST00000552045 A0A0J9YY10 115 aa3□□□□□ -1.93
LIMA1-210ENST00000552045 A0A1B0GX78 115 aa3□□□□□ -1.93
LIMA1-210ENST00000552045 I3L521 148 aa3□□□□□ -1.93
LIMA1-210ENST00000552045 CNIH1O95406 144 aa3□□□□□ -1.93
LIMA1-210ENST00000552045 ZNF705DP0CH99 300 aaPredicted RBP3□□□□□ -1.93
LIMA1-210ENST00000552045 GZMHP20718 246 aa3□□□□□ -1.93
LIMA1-210ENST00000552045 RUNX1Q01196 453 aa3□□□□□ -1.93
LIMA1-210ENST00000552045 CDK10Q15131 360 aa3□□□□□ -1.93
LIMA1-210ENST00000552045 OR6V1Q8N148 313 aa3□□□□□ -1.93
LIMA1-210ENST00000552045 ERMAPQ96PL5 475 aaPredicted RBP3□□□□□ -1.93
LIMA1-210ENST00000552045 TRIM4Q9C037 500 aa3□□□□□ -1.93
LIMA1-210ENST00000552045 DOK5Q9P104 306 aa3□□□□□ -1.93
LIMA1-210ENST00000552045 CCL26Q9Y258 94 aa3□□□□□ -1.93
LIMA1-210ENST00000552045 ARL2BPQ9Y2Y0 163 aa3□□□□□ -1.93
LIMA1-210ENST00000552045 EYSQ5T1H1 3165 aa3□□□□□ -1.93
LIMA1-210ENST00000552045 BTAF1O14981 1849 aa3□□□□□ -1.93
LIMA1-210ENST00000552045 EPG5Q9HCE0 2579 aa3□□□□□ -1.93
LIMA1-210ENST00000552045 SETXQ7Z333 2677 aaKnown RBP2.99□□□□□ -1.93
LIMA1-210ENST00000552045 OR4C46A6NHA9 309 aa2.99□□□□□ -1.93
LIMA1-210ENST00000552045 FAAHO00519 579 aa2.99□□□□□ -1.93
LIMA1-210ENST00000552045 NEFHP12036 1026 aa2.99□□□□□ -1.93
LIMA1-210ENST00000552045 S100A7P31151 101 aa2.99□□□□□ -1.93
LIMA1-210ENST00000552045 CSN1S1P47710 185 aa2.99□□□□□ -1.93
LIMA1-210ENST00000552045 AP1S1P61966 158 aa2.99□□□□□ -1.93
LIMA1-210ENST00000552045 HIST1H3AP68431 136 aa2.99□□□□□ -1.93
LIMA1-210ENST00000552045 H3F3AP84243 136 aa2.99□□□□□ -1.93
LIMA1-210ENST00000552045 KCNJ8Q15842 424 aa2.99□□□□□ -1.93
LIMA1-210ENST00000552045 MIAQ16674 131 aa2.99□□□□□ -1.93
LIMA1-210ENST00000552045 Q6ZS49 121 aa2.99□□□□□ -1.93
LIMA1-210ENST00000552045 BORCS7Q96B45 105 aa2.99□□□□□ -1.93
LIMA1-210ENST00000552045 XAGE1AQ9HD64 81 aa2.99□□□□□ -1.93
LIMA1-210ENST00000552045 PRTFDC1Q9NRG1 225 aa2.99□□□□□ -1.93
LIMA1-210ENST00000552045 PRUNE2Q8WUY3 3088 aa2.99□□□□□ -1.93
LIMA1-210ENST00000552045 ARFGEF1Q9Y6D6 1849 aa2.98□□□□□ -1.93
LIMA1-210ENST00000552045 MAST4O15021 2626 aa2.98□□□□□ -1.93
LIMA1-210ENST00000552045 PAPPA2Q9BXP8 1791 aa2.98□□□□□ -1.93
LIMA1-210ENST00000552045 TRBV20OR9-2A0A075B6H5 130 aa2.98□□□□□ -1.93
LIMA1-210ENST00000552045 FAM236DA0A1B0GTK5 79 aa2.98□□□□□ -1.93
LIMA1-210ENST00000552045 ZNF189O75820 626 aaPredicted RBP2.98□□□□□ -1.93
LIMA1-210ENST00000552045 SERPINA1P01009 418 aa2.98□□□□□ -1.93
LIMA1-210ENST00000552045 UCHL1P09936 223 aa2.98□□□□□ -1.93
LIMA1-210ENST00000552045 FAM236CP0DP71 79 aa2.98□□□□□ -1.93
LIMA1-210ENST00000552045 CA5AP35218 305 aa2.98□□□□□ -1.93
LIMA1-210ENST00000552045 ARF6P62330 175 aa2.98□□□□□ -1.93
LIMA1-210ENST00000552045 AKR1C1Q04828 323 aa2.98□□□□□ -1.93
LIMA1-210ENST00000552045 ANKRD29Q8N6D5 301 aa2.98□□□□□ -1.93
LIMA1-210ENST00000552045 ZNF283Q8N7M2 679 aa2.98□□□□□ -1.93
LIMA1-210ENST00000552045 OR8B12Q8NGG6 310 aa2.98□□□□□ -1.93
LIMA1-210ENST00000552045 CMSS1Q9BQ75 279 aaKnown RBP2.98□□□□□ -1.93
LIMA1-210ENST00000552045 WDR61Q9GZS3 305 aaKnown RBP2.98□□□□□ -1.93
LIMA1-210ENST00000552045 CISHQ9NSE2 258 aa2.98□□□□□ -1.93
LIMA1-210ENST00000552045 RSL24D1Q9UHA3 163 aaKnown RBP2.98□□□□□ -1.93
LIMA1-210ENST00000552045 ITSN1Q15811 1721 aa2.98□□□□□ -1.93
LIMA1-210ENST00000552045 DOCK5Q9H7D0 1870 aa2.98□□□□□ -1.93
LIMA1-210ENST00000552045 LMO7Q8WWI1 1683 aa2.98□□□□□ -1.93
LIMA1-210ENST00000552045 ALS2Q96Q42 1657 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms