RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 STXBP6Q8NFX7 210 aa12.41□□□□□ -0.42
CUX1-214ENST00000550008 MED12LQ86YW9 2145 aa12.41□□□□□ -0.42
CUX1-214ENST00000550008 TMEM250H0YL14 139 aa12.41□□□□□ -0.42
CUX1-214ENST00000550008 OR2J3O76001 311 aa12.41□□□□□ -0.42
CUX1-214ENST00000550008 PPOXP50336 477 aa12.41□□□□□ -0.42
CUX1-214ENST00000550008 CENPWQ5EE01 88 aa12.41□□□□□ -0.42
CUX1-214ENST00000550008 ZNF788Q6ZQV5 615 aa12.41□□□□□ -0.42
CUX1-214ENST00000550008 FGF23Q9GZV9 251 aaPredicted RBP12.41□□□□□ -0.42
CUX1-214ENST00000550008 TM4SF5O14894 197 aa12.41□□□□□ -0.42
CUX1-214ENST00000550008 CD5P06127 495 aa12.41□□□□□ -0.42
CUX1-214ENST00000550008 CD81P60033 236 aa12.41□□□□□ -0.42
CUX1-214ENST00000550008 LEMD1Q68G75 181 aa12.41□□□□□ -0.42
CUX1-214ENST00000550008 LINC00305Q7Z4B0 112 aa12.41□□□□□ -0.42
CUX1-214ENST00000550008 CXorf65A6NEN9 183 aa12.4□□□□□ -0.42
CUX1-214ENST00000550008 TNFSF13O75888 250 aa12.4□□□□□ -0.42
CUX1-214ENST00000550008 GOSR1O95249 250 aa12.4□□□□□ -0.42
CUX1-214ENST00000550008 IGKV1D-33P01593 117 aa12.4□□□□□ -0.42
CUX1-214ENST00000550008 IGKV1-33P01594 117 aa12.4□□□□□ -0.42
CUX1-214ENST00000550008 PAM16Q9Y3D7 125 aa12.4□□□□□ -0.42
CUX1-214ENST00000550008 OR4A5Q8NH83 315 aa12.4□□□□□ -0.42
CUX1-214ENST00000550008 RPUSD1Q9UJJ7 312 aaKnown RBP12.4□□□□□ -0.42
CUX1-214ENST00000550008 C15orf61A6NNL5 157 aa12.39□□□□□ -0.43
CUX1-214ENST00000550008 C1QTNF9P0C862 333 aa12.39□□□□□ -0.43
CUX1-214ENST00000550008 WDR73Q6P4I2 378 aa12.39□□□□□ -0.43
CUX1-214ENST00000550008 C5orf17Q8NAS9 161 aa12.39□□□□□ -0.43
CUX1-214ENST00000550008 VN1R17PQ8TDU5 208 aa12.39□□□□□ -0.43
CUX1-214ENST00000550008 IMMP2LQ96T52 175 aa12.39□□□□□ -0.43
CUX1-214ENST00000550008 UPK2O00526 184 aa12.39□□□□□ -0.43
CUX1-214ENST00000550008 IL4P05112 153 aa12.39□□□□□ -0.43
CUX1-214ENST00000550008 ATP5J2P56134 94 aa12.39□□□□□ -0.43
CUX1-214ENST00000550008 CYP2G1PQ6ZSU1 146 aa12.39□□□□□ -0.43
CUX1-214ENST00000550008 LYPD6Q86Y78 171 aa12.39□□□□□ -0.43
CUX1-214ENST00000550008 C11orf42Q8N5U0 333 aa12.39□□□□□ -0.43
CUX1-214ENST00000550008 GGACTQ9BVM4 153 aa12.39□□□□□ -0.43
CUX1-214ENST00000550008 CHODLQ9H9P2 273 aa12.39□□□□□ -0.43
CUX1-214ENST00000550008 UFC1Q9Y3C8 167 aa12.39□□□□□ -0.43
CUX1-214ENST00000550008 ADIPOQQ15848 244 aa12.39□□□□□ -0.43
CUX1-214ENST00000550008 MLANAQ16655 118 aa12.39□□□□□ -0.43
CUX1-214ENST00000550008 LYPD2Q6UXB3 125 aa12.39□□□□□ -0.43
CUX1-214ENST00000550008 KLHDC1Q8N7A1 406 aa12.39□□□□□ -0.43
CUX1-214ENST00000550008 DPM3Q9P2X0 92 aa12.39□□□□□ -0.43
CUX1-214ENST00000550008 HIST1H1EP10412 219 aaKnown RBP12.38□□□□□ -0.43
CUX1-214ENST00000550008 TCTAP57738 103 aa12.38□□□□□ -0.43
CUX1-214ENST00000550008 ZNF124Q15973 351 aa12.38□□□□□ -0.43
CUX1-214ENST00000550008 MST1LQ2TV78 715 aa12.38□□□□□ -0.43
CUX1-214ENST00000550008 CLEC2AQ6UVW9 174 aa12.38□□□□□ -0.43
CUX1-214ENST00000550008 SFRP2Q96HF1 295 aa12.38□□□□□ -0.43
CUX1-214ENST00000550008 SDF2L1Q9HCN8 221 aa12.38□□□□□ -0.43
CUX1-214ENST00000550008 ANAPC10Q9UM13 185 aa12.38□□□□□ -0.43
CUX1-214ENST00000550008 MYO9AB2RTY4 2548 aa12.38□□□□□ -0.43
CUX1-214ENST00000550008 RPLP1P05386 114 aaKnown RBP12.38□□□□□ -0.43
CUX1-214ENST00000550008 HTN1P15515 57 aa12.38□□□□□ -0.43
CUX1-214ENST00000550008 MEF2CQ06413 473 aaPredicted RBP12.38□□□□□ -0.43
CUX1-214ENST00000550008 ARHGAP21Q5T5U3 1957 aa12.38□□□□□ -0.43
CUX1-214ENST00000550008 LOC102724200A0A096LPH7 203 aaPredicted RBP12.38□□□□□ -0.43
CUX1-214ENST00000550008 M0R2Z0 102 aa12.38□□□□□ -0.43
CUX1-214ENST00000550008 IGKV1-16P04430 117 aa12.38□□□□□ -0.43
CUX1-214ENST00000550008 RPL23P62829 140 aaKnown RBP12.38□□□□□ -0.43
CUX1-214ENST00000550008 GOLT1AQ6ZVE7 132 aa12.38□□□□□ -0.43
CUX1-214ENST00000550008 IGHV3-66A0A0C4DH42 116 aa12.37□□□□□ -0.43
CUX1-214ENST00000550008 ZNF207O43670 478 aaKnown RBP12.37□□□□□ -0.43
CUX1-214ENST00000550008 PF4V1P10720 104 aa12.37□□□□□ -0.43
CUX1-214ENST00000550008 FCER1GP30273 86 aa12.37□□□□□ -0.43
CUX1-214ENST00000550008 WDR83OSQ9Y284 106 aa12.37□□□□□ -0.43
CUX1-214ENST00000550008 PYYP10082 97 aa12.37□□□□□ -0.43
CUX1-214ENST00000550008 SPATA31B1PQ5VZV4 182 aa12.37□□□□□ -0.43
CUX1-214ENST00000550008 TMEM200BQ69YZ2 307 aa12.37□□□□□ -0.43
CUX1-214ENST00000550008 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.37□□□□□ -0.43
CUX1-214ENST00000550008 VKORC1Q9BQB6 163 aa12.37□□□□□ -0.43
CUX1-214ENST00000550008 APCSP02743 223 aa12.37□□□□□ -0.43
CUX1-214ENST00000550008 FAM106CPP0CH98 169 aa12.37□□□□□ -0.43
CUX1-214ENST00000550008 SRSF7Q16629 238 aaKnown RBP eCLIP12.37□□□□□ -0.431e-8■■■■■ 28.4
CUX1-214ENST00000550008 TMEM183BQ1AE95 376 aa12.37□□□□□ -0.43
CUX1-214ENST00000550008 TREML4Q6UXN2 200 aa12.37□□□□□ -0.43
CUX1-214ENST00000550008 GTF2H5Q6ZYL4 71 aa12.37□□□□□ -0.43
CUX1-214ENST00000550008 BPIFA4PQ86YQ2 179 aa12.37□□□□□ -0.43
CUX1-214ENST00000550008 HSPB9Q9BQS6 159 aa12.37□□□□□ -0.43
CUX1-214ENST00000550008 M0QZK8 103 aa12.37□□□□□ -0.43
CUX1-214ENST00000550008 GGCTO75223 188 aaKnown RBP12.37□□□□□ -0.43
CUX1-214ENST00000550008 IGKV1-39P01597 117 aa12.37□□□□□ -0.43
CUX1-214ENST00000550008 IGKV1D-39P04432 117 aa12.37□□□□□ -0.43
CUX1-214ENST00000550008 TFPI2P48307 235 aa12.37□□□□□ -0.43
CUX1-214ENST00000550008 MBNL3Q9NUK0 354 aaKnown RBP12.37□□□□□ -0.43
CUX1-214ENST00000550008 RABAC1Q9UI14 185 aa12.37□□□□□ -0.43
CUX1-214ENST00000550008 FOXA2Q9Y261 457 aaPredicted RBP12.37□□□□□ -0.43
CUX1-214ENST00000550008 MRPL18Q9H0U6 180 aaKnown RBP12.36□□□□□ -0.43
CUX1-214ENST00000550008 TMEM133Q9H2Q1 129 aa12.36□□□□□ -0.43
CUX1-214ENST00000550008 TRBV6-6A0A0A6YYG2 114 aa12.36□□□□□ -0.43
CUX1-214ENST00000550008 TMEM177Q53S58 311 aa12.36□□□□□ -0.43
CUX1-214ENST00000550008 PRR31Q5SQ13 230 aa12.36□□□□□ -0.43
CUX1-214ENST00000550008 PGLYRP4Q96LB8 373 aa12.36□□□□□ -0.43
CUX1-214ENST00000550008 FAM215AQ9Y5M1 114 aa12.36□□□□□ -0.43
CUX1-214ENST00000550008 CHD9Q3L8U1 2897 aa12.36□□□□□ -0.43
CUX1-214ENST00000550008 SFTPCP11686 197 aa12.36□□□□□ -0.43
CUX1-214ENST00000550008 REC114Q7Z4M0 266 aa12.36□□□□□ -0.43
CUX1-214ENST00000550008 OR1P1Q8NH06 330 aa12.36□□□□□ -0.43
CUX1-214ENST00000550008 SLC25A33Q9BSK2 321 aa12.36□□□□□ -0.43
CUX1-214ENST00000550008 DERL1Q9BUN8 251 aa12.36□□□□□ -0.43
CUX1-214ENST00000550008 MUC21A0A0G2JKD1 596 aa12.35□□□□□ -0.43
CUX1-214ENST00000550008 MUC21A0A140T8X8 626 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms