RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 C4BPBP20851 252 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 ZBTB25P24278 435 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 PSMB6P28072 239 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 SNRPGP62308 76 aaKnown RBP4.59□□□□□ -1.67
LIMA1-204ENST00000549064 HLA-DRB3P79483 266 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 MAJINQ3KP22 176 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 RNF212Q495C1 297 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 GLT8D1Q68CQ7 371 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 KDM4DQ6B0I6 523 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 OR10K2Q6IF99 312 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 PLET1Q6UQ28 207 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 C9orf47Q6ZRZ4 202 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 ERASQ7Z444 233 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 SLC25A42Q86VD7 318 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 LYPD1Q8N2G4 141 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 SYS1Q8N2H4 156 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 CCDC197Q8NCU1 140 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 OR8J1Q8NGP2 316 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 ZNF502Q8TBZ5 544 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 GPR148Q8TDV2 347 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 PTX4Q96A99 478 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 NRBF2Q96F24 287 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 RNF2Q99496 336 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 THTPAQ9BU02 230 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 C20orf24Q9BUV8 137 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 TPPP3Q9BW30 176 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 OR2D2Q9H210 308 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 DAZ1Q9NQZ3 744 aaKnown RBP4.59□□□□□ -1.67
LIMA1-204ENST00000549064 CLEC5AQ9NY25 188 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 RDH8Q9NYR8 311 aa4.59□□□□□ -1.67
LIMA1-204ENST00000549064 HMCN2Q8NDA2 5059 aa4.58□□□□□ -1.68
LIMA1-204ENST00000549064 IGLV11-55A0A075B6I3 123 aa4.58□□□□□ -1.68
LIMA1-204ENST00000549064 TRBV7-1A0A0A6YYK4 115 aa4.58□□□□□ -1.68
LIMA1-204ENST00000549064 DYNC1I1O14576 645 aa4.58□□□□□ -1.68
LIMA1-204ENST00000549064 TGOLN2O43493 480 aa4.58□□□□□ -1.68
LIMA1-204ENST00000549064 CD3GP09693 182 aa4.58□□□□□ -1.68
LIMA1-204ENST00000549064 FUSP35637 526 aaKnown RBP eCLIP4.58□□□□□ -1.68
LIMA1-204ENST00000549064 XGP55808 180 aa4.58□□□□□ -1.68
LIMA1-204ENST00000549064 DEFB131AP59861 70 aa4.58□□□□□ -1.68
LIMA1-204ENST00000549064 HERV-K104P61576 105 aa4.58□□□□□ -1.68
LIMA1-204ENST00000549064 RTL8BQ17RB0 113 aa4.58□□□□□ -1.68
LIMA1-204ENST00000549064 LIPKQ5VXJ0 399 aa4.58□□□□□ -1.68
LIMA1-204ENST00000549064 VKORC1L1Q8N0U8 176 aa4.58□□□□□ -1.68
LIMA1-204ENST00000549064 FAM24BQ8N5W8 94 aa4.58□□□□□ -1.68
LIMA1-204ENST00000549064 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-204ENST00000549064 DMBX1Q8NFW5 382 aa4.58□□□□□ -1.68
LIMA1-204ENST00000549064 GIMAP1Q8WWP7 306 aa4.58□□□□□ -1.68
LIMA1-204ENST00000549064 FRZBQ92765 325 aa4.58□□□□□ -1.68
LIMA1-204ENST00000549064 CIB1Q99828 191 aa4.58□□□□□ -1.68
LIMA1-204ENST00000549064 NICN1Q9BSH3 213 aa4.58□□□□□ -1.68
LIMA1-204ENST00000549064 C1QTNF4Q9BXJ3 329 aa4.58□□□□□ -1.68
LIMA1-204ENST00000549064 FAM107BQ9H098 131 aa4.58□□□□□ -1.68
LIMA1-204ENST00000549064 EXOGQ9Y2C4 368 aaKnown RBP4.58□□□□□ -1.68
LIMA1-204ENST00000549064 IGHV3OR16-13A0A075B7E8 117 aa4.57□□□□□ -1.68
LIMA1-204ENST00000549064 IGHV3-74A0A0B4J1X5 117 aa4.57□□□□□ -1.68
LIMA1-204ENST00000549064 NBDYA0A0U1RRE5 68 aa4.57□□□□□ -1.68
LIMA1-204ENST00000549064 OR2T8A6NH00 312 aa4.57□□□□□ -1.68
LIMA1-204ENST00000549064 CIDEAO60543 219 aa4.57□□□□□ -1.68
LIMA1-204ENST00000549064 SMR3BP02814 79 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-204ENST00000549064 CRYGCP07315 174 aa4.57□□□□□ -1.68
LIMA1-204ENST00000549064 HTR2CP28335 458 aa4.57□□□□□ -1.68
LIMA1-204ENST00000549064 RPL27AP46776 148 aaKnown RBP4.57□□□□□ -1.68
LIMA1-204ENST00000549064 GBX2P52951 348 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-204ENST00000549064 CDK10Q15131 360 aa4.57□□□□□ -1.68
LIMA1-204ENST00000549064 OR2G6Q5TZ20 316 aa4.57□□□□□ -1.68
LIMA1-204ENST00000549064 MOB1BQ7L9L4 216 aa4.57□□□□□ -1.68
LIMA1-204ENST00000549064 SPATA24Q86W54 205 aa4.57□□□□□ -1.68
LIMA1-204ENST00000549064 OR6M1Q8NGM8 313 aa4.57□□□□□ -1.68
LIMA1-204ENST00000549064 FCAMRQ8WWV6 532 aa4.57□□□□□ -1.68
LIMA1-204ENST00000549064 PHYHIPQ92561 330 aa4.57□□□□□ -1.68
LIMA1-204ENST00000549064 YTHDF1Q9BYJ9 559 aaKnown RBP4.57□□□□□ -1.68
LIMA1-204ENST00000549064 SLC2A9Q9NRM0 540 aa4.57□□□□□ -1.68
LIMA1-204ENST00000549064 IMPAD1Q9NX62 359 aa4.57□□□□□ -1.68
LIMA1-204ENST00000549064 SMPXQ9UHP9 88 aa4.57□□□□□ -1.68
LIMA1-204ENST00000549064 AK3Q9UIJ7 227 aa4.57□□□□□ -1.68
LIMA1-204ENST00000549064 TBC1D24Q9ULP9 559 aa4.57□□□□□ -1.68
LIMA1-204ENST00000549064 A0A087WZ39 114 aa4.56□□□□□ -1.68
LIMA1-204ENST00000549064 A0A0A6YYD4 124 aa4.56□□□□□ -1.68
LIMA1-204ENST00000549064 IGHV3-21A0A0B4J1V1 117 aa4.56□□□□□ -1.68
LIMA1-204ENST00000549064 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-204ENST00000549064 G3V2T6 193 aa4.56□□□□□ -1.68
LIMA1-204ENST00000549064 CHEK1O14757 476 aa4.56□□□□□ -1.68
LIMA1-204ENST00000549064 CREBL2O60519 120 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-204ENST00000549064 ZNF735P0CB33 412 aa4.56□□□□□ -1.68
LIMA1-204ENST00000549064 RRASP10301 218 aa4.56□□□□□ -1.68
LIMA1-204ENST00000549064 DEFA4P12838 97 aa4.56□□□□□ -1.68
LIMA1-204ENST00000549064 HTN3P15516 51 aa4.56□□□□□ -1.68
LIMA1-204ENST00000549064 HIST1H1BP16401 226 aaKnown RBP4.56□□□□□ -1.68
LIMA1-204ENST00000549064 NPY1RP25929 384 aa4.56□□□□□ -1.68
LIMA1-204ENST00000549064 PSMD7P51665 324 aa4.56□□□□□ -1.68
LIMA1-204ENST00000549064 CMC4P56277 68 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-204ENST00000549064 KLK9Q2XQG4 91 aa4.56□□□□□ -1.68
LIMA1-204ENST00000549064 OR2B11Q5JQS5 317 aa4.56□□□□□ -1.68
LIMA1-204ENST00000549064 FAM159AQ6UWV7 190 aa4.56□□□□□ -1.68
LIMA1-204ENST00000549064 TRPT1Q86TN4 253 aaKnown RBP4.56□□□□□ -1.68
LIMA1-204ENST00000549064 FAM89BQ8N5H3 189 aa4.56□□□□□ -1.68
LIMA1-204ENST00000549064 CSNK1G2-AS1Q8NCQ2 148 aa4.56□□□□□ -1.68
LIMA1-204ENST00000549064 MRPL48Q96GC5 212 aaKnown RBP4.56□□□□□ -1.68
LIMA1-204ENST00000549064 ZNF414Q96IQ9 312 aa4.56□□□□□ -1.68
LIMA1-204ENST00000549064 OR2A7Q96R45 310 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms