RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 MOB3AQ96BX8 217 aa12.23□□□□□ -0.45
VPS29-204ENST00000548259 GRAMD2BQ96HH9 432 aa12.23□□□□□ -0.45
VPS29-204ENST00000548259 RHBDL2Q9NX52 303 aa12.23□□□□□ -0.45
VPS29-204ENST00000548259 DAPK2Q9UIK4 370 aa12.23□□□□□ -0.45
VPS29-204ENST00000548259 NSG2Q9Y328 171 aa12.23□□□□□ -0.45
VPS29-204ENST00000548259 ELOA3CA0A087WX78 387 aaPredicted RBP12.22□□□□□ -0.45
VPS29-204ENST00000548259 I3L2K1 104 aa12.22□□□□□ -0.45
VPS29-204ENST00000548259 SCGB2A1O75556 95 aa12.22□□□□□ -0.45
VPS29-204ENST00000548259 RLN1P04808 185 aa12.22□□□□□ -0.45
VPS29-204ENST00000548259 PTHLHP12272 177 aa12.22□□□□□ -0.45
VPS29-204ENST00000548259 LPAR6P43657 344 aa12.22□□□□□ -0.45
VPS29-204ENST00000548259 CBX5P45973 191 aa12.22□□□□□ -0.45
VPS29-204ENST00000548259 EIF2B2P49770 351 aaKnown RBP12.22□□□□□ -0.45
VPS29-204ENST00000548259 NUTF2P61970 127 aaKnown RBP12.22□□□□□ -0.45
VPS29-204ENST00000548259 UBE2UQ5VVX9 321 aa12.22□□□□□ -0.45
VPS29-204ENST00000548259 ZNF600Q6ZNG1 722 aa12.22□□□□□ -0.45
VPS29-204ENST00000548259 OR5AP2Q8NGF4 316 aa12.22□□□□□ -0.45
VPS29-204ENST00000548259 PINX1Q96BK5 328 aaKnown RBP12.22□□□□□ -0.45
VPS29-204ENST00000548259 C1QTNF4Q9BXJ3 329 aa12.22□□□□□ -0.45
VPS29-204ENST00000548259 DNAH2Q9P225 4427 aa12.22□□□□□ -0.45
VPS29-204ENST00000548259 TRAV18A0A075B6X5 111 aa12.21□□□□□ -0.45
VPS29-204ENST00000548259 SMIM30A4D0T7 59 aa12.21□□□□□ -0.45
VPS29-204ENST00000548259 GIG44P09565 113 aaPredicted RBP12.21□□□□□ -0.45
VPS29-204ENST00000548259 NPPCP23582 126 aa12.21□□□□□ -0.45
VPS29-204ENST00000548259 S100GP29377 79 aa12.21□□□□□ -0.45
VPS29-204ENST00000548259 GNRHRP30968 328 aa12.21□□□□□ -0.45
VPS29-204ENST00000548259 G6PCP35575 357 aa12.21□□□□□ -0.45
VPS29-204ENST00000548259 ERHP84090 104 aaKnown RBP12.21□□□□□ -0.45
VPS29-204ENST00000548259 C12orf74Q32Q52 190 aa12.21□□□□□ -0.45
VPS29-204ENST00000548259 KCTD21Q4G0X4 260 aa12.21□□□□□ -0.45
VPS29-204ENST00000548259 STXBP6Q8NFX7 210 aa12.21□□□□□ -0.45
VPS29-204ENST00000548259 BLOC1S6Q9UL45 172 aa12.21□□□□□ -0.45
VPS29-204ENST00000548259 X6R8D5 127 aa12.21□□□□□ -0.45
VPS29-204ENST00000548259 A0A0A6YYH2 397 aa12.2□□□□□ -0.46
VPS29-204ENST00000548259 IGHV3-66A0A0C4DH42 116 aa12.2□□□□□ -0.46
VPS29-204ENST00000548259 A6NJ64 397 aa12.2□□□□□ -0.46
VPS29-204ENST00000548259 ACTL10Q5JWF8 245 aa12.2□□□□□ -0.46
VPS29-204ENST00000548259 FAM24BQ8N5W8 94 aa12.2□□□□□ -0.46
VPS29-204ENST00000548259 ZNF114Q8NC26 417 aa12.2□□□□□ -0.46
VPS29-204ENST00000548259 OR4A16Q8NH70 328 aa12.2□□□□□ -0.46
VPS29-204ENST00000548259 LGALS14Q8TCE9 139 aa12.2□□□□□ -0.46
VPS29-204ENST00000548259 FCAMRQ8WWV6 532 aa12.2□□□□□ -0.46
VPS29-204ENST00000548259 FAM210BQ96KR6 192 aa12.2□□□□□ -0.46
VPS29-204ENST00000548259 METTL26Q96S19 204 aa12.2□□□□□ -0.46
VPS29-204ENST00000548259 PUS1Q9Y606 427 aaKnown RBP eCLIP12.2□□□□□ -0.46
VPS29-204ENST00000548259 PGLYRP1O75594 196 aaPredicted RBP12.19□□□□□ -0.46
VPS29-204ENST00000548259 IGHV3-48P01763 117 aa12.19□□□□□ -0.46
VPS29-204ENST00000548259 APOHP02749 345 aaPredicted RBP12.19□□□□□ -0.46
VPS29-204ENST00000548259 ZNF688P0C7X2 276 aa12.19□□□□□ -0.46
VPS29-204ENST00000548259 C4BPBP20851 252 aa12.19□□□□□ -0.46
VPS29-204ENST00000548259 SCAND1P57086 179 aa12.19□□□□□ -0.46
VPS29-204ENST00000548259 IFT46Q9NQC8 304 aa12.19□□□□□ -0.46
VPS29-204ENST00000548259 DIABLOQ9NR28 239 aa12.19□□□□□ -0.46
VPS29-204ENST00000548259 CLEC5AQ9NY25 188 aa12.19□□□□□ -0.46
VPS29-204ENST00000548259 EHFQ9NZC4 300 aa12.19□□□□□ -0.46
VPS29-204ENST00000548259 RRP15Q9Y3B9 282 aaKnown RBP12.19□□□□□ -0.46
VPS29-204ENST00000548259 DNAH11Q96DT5 4516 aa12.18□□□□□ -0.46
VPS29-204ENST00000548259 K7EQG2 157 aa12.18□□□□□ -0.46
VPS29-204ENST00000548259 SNCAP37840 140 aa12.18□□□□□ -0.46
VPS29-204ENST00000548259 SFXN4Q6P4A7 337 aa12.18□□□□□ -0.46
VPS29-204ENST00000548259 ZNF767PQ75MW2 155 aa12.18□□□□□ -0.46
VPS29-204ENST00000548259 H2BFWTQ7Z2G1 175 aa12.18□□□□□ -0.46
VPS29-204ENST00000548259 ZNF575Q86XF7 245 aa12.18□□□□□ -0.46
VPS29-204ENST00000548259 LILRB2Q8N423 598 aa12.18□□□□□ -0.46
VPS29-204ENST00000548259 CELA1Q9UNI1 258 aa12.18□□□□□ -0.46
VPS29-204ENST00000548259 IGLV2-18A0A075B6J9 118 aa12.17□□□□□ -0.46
VPS29-204ENST00000548259 TMEM189A5PLL7 270 aa12.17□□□□□ -0.46
VPS29-204ENST00000548259 KNCNA6PVL3 124 aa12.17□□□□□ -0.46
VPS29-204ENST00000548259 FCER2P06734 321 aa12.17□□□□□ -0.46
VPS29-204ENST00000548259 SPART-AS1P0CW21 52 aa12.17□□□□□ -0.46
VPS29-204ENST00000548259 FGF9P31371 208 aaPredicted RBP12.17□□□□□ -0.46
VPS29-204ENST00000548259 PRCDQ00LT1 54 aa12.17□□□□□ -0.46
VPS29-204ENST00000548259 C1orf134Q5TEV5 83 aa12.17□□□□□ -0.46
VPS29-204ENST00000548259 DNAH17Q9UFH2 4485 aa12.17□□□□□ -0.46
VPS29-204ENST00000548259 ABCA13Q86UQ4 5058 aa12.16□□□□□ -0.46
VPS29-204ENST00000548259 TEX48A0A1B0GUV7 120 aa12.16□□□□□ -0.46
VPS29-204ENST00000548259 HELTA6NFD8 242 aa12.16□□□□□ -0.46
VPS29-204ENST00000548259 GPR31O00270 319 aa12.16□□□□□ -0.46
VPS29-204ENST00000548259 P2RY1P47900 373 aa12.16□□□□□ -0.46
VPS29-204ENST00000548259 RNF212Q495C1 297 aa12.16□□□□□ -0.46
VPS29-204ENST00000548259 DHRS11Q6UWP2 260 aa12.16□□□□□ -0.46
VPS29-204ENST00000548259 CSNK1G2-AS1Q8NCQ2 148 aa12.16□□□□□ -0.46
VPS29-204ENST00000548259 ZNF2Q9BSG1 426 aaPredicted RBP12.16□□□□□ -0.46
VPS29-204ENST00000548259 KRTAP4-5Q9BYR2 181 aa12.16□□□□□ -0.46
VPS29-204ENST00000548259 AUNIPQ9H7T9 357 aa12.16□□□□□ -0.46
VPS29-204ENST00000548259 ZFAND3Q9H8U3 227 aa12.16□□□□□ -0.46
VPS29-204ENST00000548259 FAM212BQ9NTI7 297 aaPredicted RBP12.16□□□□□ -0.46
VPS29-204ENST00000548259 TXNL4BQ9NX01 149 aaKnown RBP12.16□□□□□ -0.46
VPS29-204ENST00000548259 CORTO00230 105 aa12.15□□□□□ -0.46
VPS29-204ENST00000548259 CD74P04233 296 aa12.15□□□□□ -0.46
VPS29-204ENST00000548259 AP2S1P53680 142 aaPredicted RBP12.15□□□□□ -0.46
VPS29-204ENST00000548259 SUB1P53999 127 aaKnown RBP eCLIP12.15□□□□□ -0.46
VPS29-204ENST00000548259 HSPE1P61604 102 aaKnown RBP12.15□□□□□ -0.46
VPS29-204ENST00000548259 SNRPD3P62318 126 aaKnown RBP12.15□□□□□ -0.46
VPS29-204ENST00000548259 Q6ZR54 194 aa12.15□□□□□ -0.46
VPS29-204ENST00000548259 Q6ZRM9 215 aa12.15□□□□□ -0.46
VPS29-204ENST00000548259 TMEM230Q96A57 120 aa12.15□□□□□ -0.46
VPS29-204ENST00000548259 SSR3Q9UNL2 185 aa12.15□□□□□ -0.46
VPS29-204ENST00000548259 DBX1A6NMT0 343 aa12.14□□□□□ -0.47
VPS29-204ENST00000548259 C16orf90A8MZG2 172 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms