RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 MPTX1A8MV57 137 aa10.64□□□□□ -0.71
PTCH1-213ENST00000546820 SYNGR2O43760 224 aa10.64□□□□□ -0.71
PTCH1-213ENST00000546820 SSNA1O43805 119 aa10.64□□□□□ -0.71
PTCH1-213ENST00000546820 RNASE2P10153 161 aaKnown RBP10.64□□□□□ -0.71
PTCH1-213ENST00000546820 CD33P20138 364 aa10.64□□□□□ -0.71
PTCH1-213ENST00000546820 DEFA5Q01523 94 aa10.64□□□□□ -0.71
PTCH1-213ENST00000546820 ID3Q02535 119 aa10.64□□□□□ -0.71
PTCH1-213ENST00000546820 TATDN3Q17R31 274 aa10.64□□□□□ -0.71
PTCH1-213ENST00000546820 DEFB136Q30KP8 78 aa10.64□□□□□ -0.71
PTCH1-213ENST00000546820 C2orf83Q53S99 150 aa10.64□□□□□ -0.71
PTCH1-213ENST00000546820 ZBTB8BQ8NAP8 495 aaPredicted RBP10.64□□□□□ -0.71
PTCH1-213ENST00000546820 SLC24A4Q8NFF2 622 aa10.64□□□□□ -0.71
PTCH1-213ENST00000546820 OR4D5Q8NGN0 318 aa10.64□□□□□ -0.71
PTCH1-213ENST00000546820 OR10C1Q96KK4 312 aa10.64□□□□□ -0.71
PTCH1-213ENST00000546820 C2orf50Q96LR7 162 aa10.64□□□□□ -0.71
PTCH1-213ENST00000546820 ATP6V0BQ99437 205 aa10.64□□□□□ -0.71
PTCH1-213ENST00000546820 GAR1Q9NY12 217 aaKnown RBP10.64□□□□□ -0.71
PTCH1-213ENST00000546820 NPY1RP25929 384 aa10.63□□□□□ -0.71
PTCH1-213ENST00000546820 MFAP2P55001 183 aa10.63□□□□□ -0.71
PTCH1-213ENST00000546820 RAB11AP62491 216 aa10.63□□□□□ -0.71
PTCH1-213ENST00000546820 BSXQ3C1V8 233 aa10.63□□□□□ -0.71
PTCH1-213ENST00000546820 ETFRF1Q6IPR1 90 aa10.63□□□□□ -0.71
PTCH1-213ENST00000546820 WFDC9Q8NEX5 89 aa10.63□□□□□ -0.71
PTCH1-213ENST00000546820 RNASEH2CQ8TDP1 164 aaKnown RBP10.63□□□□□ -0.71
PTCH1-213ENST00000546820 PINX1Q96BK5 328 aaKnown RBP10.63□□□□□ -0.71
PTCH1-213ENST00000546820 DUX3Q96PT4 197 aa10.63□□□□□ -0.71
PTCH1-213ENST00000546820 TXN2Q99757 166 aa10.63□□□□□ -0.71
PTCH1-213ENST00000546820 MAGT1Q9H0U3 335 aa10.63□□□□□ -0.71
PTCH1-213ENST00000546820 C21orf62Q9NYP8 219 aa10.63□□□□□ -0.71
PTCH1-213ENST00000546820 DMRT1Q9Y5R6 373 aa10.63□□□□□ -0.71
PTCH1-213ENST00000546820 IGHV4OR15-8A0A075B7B6 117 aa10.62□□□□□ -0.71
PTCH1-213ENST00000546820 A0A087WW49 117 aa10.62□□□□□ -0.71
PTCH1-213ENST00000546820 RPS10-NUDT3A0A1W2PQS6 291 aa10.62□□□□□ -0.71
PTCH1-213ENST00000546820 CCSO14618 274 aa10.62□□□□□ -0.71
PTCH1-213ENST00000546820 GGCTO75223 188 aaKnown RBP10.62□□□□□ -0.71
PTCH1-213ENST00000546820 SCGB1D2O95969 90 aa10.62□□□□□ -0.71
PTCH1-213ENST00000546820 MT-CO2P00403 227 aa10.62□□□□□ -0.71
PTCH1-213ENST00000546820 CLEC3BP05452 202 aa10.62□□□□□ -0.71
PTCH1-213ENST00000546820 MFAP4P55083 255 aa10.62□□□□□ -0.71
PTCH1-213ENST00000546820 CYCSP99999 105 aaKnown RBP10.62□□□□□ -0.71
PTCH1-213ENST00000546820 FHL3Q13643 280 aa10.62□□□□□ -0.71
PTCH1-213ENST00000546820 RPEL1Q2QD12 228 aa10.62□□□□□ -0.71
PTCH1-213ENST00000546820 PVRIGQ6DKI7 326 aa10.62□□□□□ -0.71
PTCH1-213ENST00000546820 CLEC19AQ6UXS0 136 aa10.62□□□□□ -0.71
PTCH1-213ENST00000546820 ETV3LQ6ZN32 361 aa10.62□□□□□ -0.71
PTCH1-213ENST00000546820 ZNF502Q8TBZ5 544 aa10.62□□□□□ -0.71
PTCH1-213ENST00000546820 SCARB1Q8WTV0 552 aa10.62□□□□□ -0.71
PTCH1-213ENST00000546820 MCRIP2Q9BUT9 160 aaKnown RBP10.62□□□□□ -0.71
PTCH1-213ENST00000546820 C7orf66A4D0T2 115 aa10.61□□□□□ -0.71
PTCH1-213ENST00000546820 MFSD2BA6NFX1 497 aa10.61□□□□□ -0.71
PTCH1-213ENST00000546820 I3L2K1 104 aa10.61□□□□□ -0.71
PTCH1-213ENST00000546820 K7EIM0 57 aa10.61□□□□□ -0.71
PTCH1-213ENST00000546820 GOSR2O14653 212 aa10.61□□□□□ -0.71
PTCH1-213ENST00000546820 IGHV3-23P01764 117 aa10.61□□□□□ -0.71
PTCH1-213ENST00000546820 IFNA4P05014 189 aa10.61□□□□□ -0.71
PTCH1-213ENST00000546820 IAPPP10997 89 aa10.61□□□□□ -0.71
PTCH1-213ENST00000546820 ARL3P36405 182 aa10.61□□□□□ -0.71
PTCH1-213ENST00000546820 OPRK1P41145 380 aa10.61□□□□□ -0.71
PTCH1-213ENST00000546820 NPBWR1P48145 328 aa10.61□□□□□ -0.71
PTCH1-213ENST00000546820 POLR2GP62487 172 aaKnown RBP eCLIP10.61□□□□□ -0.71
PTCH1-213ENST00000546820 Q56UQ5 140 aa10.61□□□□□ -0.71
PTCH1-213ENST00000546820 LINC00482Q8N8I6 264 aa10.61□□□□□ -0.71
PTCH1-213ENST00000546820 RAB40CQ96S21 281 aa10.61□□□□□ -0.71
PTCH1-213ENST00000546820 S4R3C0 116 aa10.61□□□□□ -0.71
PTCH1-213ENST00000546820 IGHV3-21A0A0B4J1V1 117 aa10.6□□□□□ -0.71
PTCH1-213ENST00000546820 SCGB2A1O75556 95 aa10.6□□□□□ -0.71
PTCH1-213ENST00000546820 HOXD3P31249 432 aaPredicted RBP10.6□□□□□ -0.71
PTCH1-213ENST00000546820 OXA1LQ15070 435 aa10.6□□□□□ -0.71
PTCH1-213ENST00000546820 FAM106AQ4KMX7 169 aa10.6□□□□□ -0.71
PTCH1-213ENST00000546820 ACSM6Q6P461 480 aa10.6□□□□□ -0.71
PTCH1-213ENST00000546820 SPSB3Q6PJ21 355 aa10.6□□□□□ -0.71
PTCH1-213ENST00000546820 UBAC2Q8NBM4 344 aa10.6□□□□□ -0.71
PTCH1-213ENST00000546820 BSCL2Q96G97 398 aaPredicted RBP10.6□□□□□ -0.71
PTCH1-213ENST00000546820 RCC1LQ96I51 464 aaKnown RBP10.6□□□□□ -0.71
PTCH1-213ENST00000546820 SMIM8Q96KF7 97 aa10.6□□□□□ -0.71
PTCH1-213ENST00000546820 GPR61Q9BZJ8 451 aa10.6□□□□□ -0.71
PTCH1-213ENST00000546820 PSENENQ9NZ42 101 aa10.6□□□□□ -0.71
PTCH1-213ENST00000546820 PAIP2BQ9ULR5 123 aaKnown RBP10.6□□□□□ -0.71
PTCH1-213ENST00000546820 STRAPQ9Y3F4 350 aaKnown RBP10.6□□□□□ -0.71
PTCH1-213ENST00000546820 L7N2F9 121 aa10.59□□□□□ -0.71
PTCH1-213ENST00000546820 BMPR1BO00238 502 aa10.59□□□□□ -0.71
PTCH1-213ENST00000546820 OVOL1O14753 267 aa10.59□□□□□ -0.71
PTCH1-213ENST00000546820 NUPL2O15504 423 aaKnown RBP10.59□□□□□ -0.71
PTCH1-213ENST00000546820 SSSCA1O60232 199 aa10.59□□□□□ -0.71
PTCH1-213ENST00000546820 GNG7O60262 68 aa10.59□□□□□ -0.71
PTCH1-213ENST00000546820 TRBV12-3P01733 135 aa10.59□□□□□ -0.71
PTCH1-213ENST00000546820 MBPP02686 304 aaPredicted RBP10.59□□□□□ -0.71
PTCH1-213ENST00000546820 RLN2P04090 185 aa10.59□□□□□ -0.71
PTCH1-213ENST00000546820 SLC25A4P12235 298 aa10.59□□□□□ -0.71
PTCH1-213ENST00000546820 PVALBP20472 110 aaPredicted RBP10.59□□□□□ -0.71
PTCH1-213ENST00000546820 FCGR2BP31994 310 aaPredicted RBP10.59□□□□□ -0.71
PTCH1-213ENST00000546820 GPR183P32249 361 aa10.59□□□□□ -0.71
PTCH1-213ENST00000546820 SLURP1P55000 103 aa10.59□□□□□ -0.71
PTCH1-213ENST00000546820 TAS2R30P59541 319 aa10.59□□□□□ -0.71
PTCH1-213ENST00000546820 VAMP2P63027 116 aa10.59□□□□□ -0.71
PTCH1-213ENST00000546820 SPANXN5Q5MJ07 72 aa10.59□□□□□ -0.71
PTCH1-213ENST00000546820 DCUN1D4Q92564 292 aa10.59□□□□□ -0.71
PTCH1-213ENST00000546820 CCDC140Q96MF4 163 aa10.59□□□□□ -0.71
PTCH1-213ENST00000546820 MED28Q9H204 178 aa10.59□□□□□ -0.71
PTCH1-213ENST00000546820 ALG5Q9Y673 324 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms