RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 SRSF8Q9BRL6 282 aaKnown RBP6.3□□□□□ -1.4
USP28-215ENST00000545608 ZNF436Q9C0F3 470 aaPredicted RBP6.3□□□□□ -1.4
USP28-215ENST00000545608 PLEKHA2Q9HB19 425 aa6.3□□□□□ -1.4
USP28-215ENST00000545608 UFC1Q9Y3C8 167 aa6.3□□□□□ -1.4
USP28-215ENST00000545608 CSMD3Q7Z407 3707 aa6.29□□□□□ -1.4
USP28-215ENST00000545608 IGHV3-21A0A0B4J1V1 117 aa6.29□□□□□ -1.4
USP28-215ENST00000545608 OR2T8A6NH00 312 aa6.29□□□□□ -1.4
USP28-215ENST00000545608 RGS5O15539 181 aa6.29□□□□□ -1.4
USP28-215ENST00000545608 PGLYRP1O75594 196 aaPredicted RBP6.29□□□□□ -1.4
USP28-215ENST00000545608 SERPINE2P07093 398 aa6.29□□□□□ -1.4
USP28-215ENST00000545608 OR13C7P0DN81 318 aa6.29□□□□□ -1.4
USP28-215ENST00000545608 TGFBR1P36897 503 aa6.29□□□□□ -1.4
USP28-215ENST00000545608 LPAR6P43657 344 aa6.29□□□□□ -1.4
USP28-215ENST00000545608 CBX5P45973 191 aa6.29□□□□□ -1.4
USP28-215ENST00000545608 RFX2P48378 723 aa6.29□□□□□ -1.4
USP28-215ENST00000545608 EWSR1Q01844 656 aaKnown RBP eCLIP6.29□□□□□ -1.4
USP28-215ENST00000545608 WT1-ASQ06250 92 aa6.29□□□□□ -1.4
USP28-215ENST00000545608 SLC25A24Q6NUK1 477 aa6.29□□□□□ -1.4
USP28-215ENST00000545608 DHRS11Q6UWP2 260 aa6.29□□□□□ -1.4
USP28-215ENST00000545608 RBPMS2Q6ZRY4 209 aaKnown RBP6.29□□□□□ -1.4
USP28-215ENST00000545608 OR2C3Q8N628 320 aa6.29□□□□□ -1.4
USP28-215ENST00000545608 CD300LFQ8TDQ1 290 aa6.29□□□□□ -1.4
USP28-215ENST00000545608 VN1R17PQ8TDU5 208 aa6.29□□□□□ -1.4
USP28-215ENST00000545608 DEDD2Q8WXF8 326 aa6.29□□□□□ -1.4
USP28-215ENST00000545608 TMEM190Q8WZ59 177 aa6.29□□□□□ -1.4
USP28-215ENST00000545608 CHRDL1Q9BU40 450 aa6.29□□□□□ -1.4
USP28-215ENST00000545608 QTRT1Q9BXR0 403 aaKnown RBP6.29□□□□□ -1.4
USP28-215ENST00000545608 C5orf66Q9H5L9 145 aa6.29□□□□□ -1.4
USP28-215ENST00000545608 COMMD9Q9P000 198 aa6.29□□□□□ -1.4
USP28-215ENST00000545608 THYN1Q9P016 225 aa6.29□□□□□ -1.4
USP28-215ENST00000545608 UBQLN2Q9UHD9 624 aa6.29□□□□□ -1.4
USP28-215ENST00000545608 RABL2BQ9UNT1 228 aa6.29□□□□□ -1.4
USP28-215ENST00000545608 NSG2Q9Y328 171 aa6.29□□□□□ -1.4
USP28-215ENST00000545608 EPPK1P58107 5090 aaKnown RBP6.29□□□□□ -1.4
USP28-215ENST00000545608 IGHV3OR16-8A0A075B7F1 116 aa6.28□□□□□ -1.4
USP28-215ENST00000545608 XRCC3O43542 346 aa6.28□□□□□ -1.4
USP28-215ENST00000545608 PMP2P02689 132 aa6.28□□□□□ -1.4
USP28-215ENST00000545608 RLN1P04808 185 aa6.28□□□□□ -1.4
USP28-215ENST00000545608 FGF2P09038 288 aa6.28□□□□□ -1.4
USP28-215ENST00000545608 F2RP25116 425 aa6.28□□□□□ -1.4
USP28-215ENST00000545608 HERV-K104P61576 105 aa6.28□□□□□ -1.4
USP28-215ENST00000545608 TRIQKQ629K1 86 aa6.28□□□□□ -1.4
USP28-215ENST00000545608 NRARPQ7Z6K4 114 aa6.28□□□□□ -1.4
USP28-215ENST00000545608 SLC38A6Q8IZM9 456 aa6.28□□□□□ -1.4
USP28-215ENST00000545608 OR1L8Q8NGR8 309 aa6.28□□□□□ -1.4
USP28-215ENST00000545608 SCARB1Q8WTV0 552 aa6.28□□□□□ -1.4
USP28-215ENST00000545608 FCAMRQ8WWV6 532 aa6.28□□□□□ -1.4
USP28-215ENST00000545608 MOB3AQ96BX8 217 aa6.28□□□□□ -1.4
USP28-215ENST00000545608 ZNF414Q96IQ9 312 aa6.28□□□□□ -1.4
USP28-215ENST00000545608 SPAG8Q99932 426 aaPredicted RBP6.28□□□□□ -1.4
USP28-215ENST00000545608 ZNF2Q9BSG1 426 aaPredicted RBP6.28□□□□□ -1.4
USP28-215ENST00000545608 HINT2Q9BX68 163 aa6.28□□□□□ -1.4
USP28-215ENST00000545608 NDUFA4L2Q9NRX3 87 aa6.28□□□□□ -1.4
USP28-215ENST00000545608 EHFQ9NZC4 300 aa6.28□□□□□ -1.4
USP28-215ENST00000545608 ANAPC10Q9UM13 185 aa6.28□□□□□ -1.4
USP28-215ENST00000545608 F11RQ9Y624 299 aaKnown RBP6.28□□□□□ -1.4
USP28-215ENST00000545608 BIRC6Q9NR09 4857 aa6.28□□□□□ -1.4
USP28-215ENST00000545608 A0A0J9YWU9 116 aa6.27□□□□□ -1.41
USP28-215ENST00000545608 LINC00862A6NCI5 91 aa6.27□□□□□ -1.41
USP28-215ENST00000545608 DBX1A6NMT0 343 aa6.27□□□□□ -1.41
USP28-215ENST00000545608 MARCH11A6NNE9 402 aa6.27□□□□□ -1.41
USP28-215ENST00000545608 K7EIM0 57 aa6.27□□□□□ -1.41
USP28-215ENST00000545608 NDUFA4O00483 81 aa6.27□□□□□ -1.41
USP28-215ENST00000545608 TSPAN4O14817 238 aa6.27□□□□□ -1.41
USP28-215ENST00000545608 SPRY2O43597 315 aa6.27□□□□□ -1.41
USP28-215ENST00000545608 ZNF207O43670 478 aaKnown RBP6.27□□□□□ -1.41
USP28-215ENST00000545608 KRASP01116 189 aa6.27□□□□□ -1.41
USP28-215ENST00000545608 IFNA7P01567 189 aa6.27□□□□□ -1.41
USP28-215ENST00000545608 TNFSF8P32971 234 aa6.27□□□□□ -1.41
USP28-215ENST00000545608 G6PCP35575 357 aa6.27□□□□□ -1.41
USP28-215ENST00000545608 RPS19P39019 145 aaKnown RBP6.27□□□□□ -1.41
USP28-215ENST00000545608 ERVK-16P61578 105 aa6.27□□□□□ -1.41
USP28-215ENST00000545608 PMS2P11Q13670 270 aa6.27□□□□□ -1.41
USP28-215ENST00000545608 ODF3L2Q3SX64 289 aa6.27□□□□□ -1.41
USP28-215ENST00000545608 MZT2AQ6P582 158 aa6.27□□□□□ -1.41
USP28-215ENST00000545608 HSD17B13Q7Z5P4 300 aaPredicted RBP6.27□□□□□ -1.41
USP28-215ENST00000545608 LINC00476Q8WZB0 136 aa6.27□□□□□ -1.41
USP28-215ENST00000545608 LSM10Q969L4 123 aaKnown RBP6.27□□□□□ -1.41
USP28-215ENST00000545608 S100A16Q96FQ6 103 aaKnown RBP6.27□□□□□ -1.41
USP28-215ENST00000545608 BSCL2Q96G97 398 aaPredicted RBP6.27□□□□□ -1.41
USP28-215ENST00000545608 IFT46Q9NQC8 304 aa6.27□□□□□ -1.41
USP28-215ENST00000545608 C21orf62Q9NYP8 219 aa6.27□□□□□ -1.41
USP28-215ENST00000545608 RABL2AQ9UBK7 228 aaPredicted RBP6.27□□□□□ -1.41
USP28-215ENST00000545608 OR51B2Q9Y5P1 312 aa6.27□□□□□ -1.41
USP28-215ENST00000545608 CXorf65A6NEN9 183 aa6.26□□□□□ -1.41
USP28-215ENST00000545608 FABP12A6NFH5 140 aa6.26□□□□□ -1.41
USP28-215ENST00000545608 K7EMT4 169 aa6.26□□□□□ -1.41
USP28-215ENST00000545608 CYB5BO43169 146 aa6.26□□□□□ -1.41
USP28-215ENST00000545608 TMEM127O75204 238 aa6.26□□□□□ -1.41
USP28-215ENST00000545608 CTSDP07339 412 aaPredicted RBP6.26□□□□□ -1.41
USP28-215ENST00000545608 CTSGP08311 255 aa6.26□□□□□ -1.41
USP28-215ENST00000545608 RPL35AP18077 110 aaKnown RBP6.26□□□□□ -1.41
USP28-215ENST00000545608 BMI1P35226 326 aa6.26□□□□□ -1.41
USP28-215ENST00000545608 APOC4P55056 127 aa6.26□□□□□ -1.41
USP28-215ENST00000545608 TAS2R20P59543 309 aa6.26□□□□□ -1.41
USP28-215ENST00000545608 TNFRSF9Q07011 255 aa6.26□□□□□ -1.41
USP28-215ENST00000545608 DEFB135Q30KP9 77 aa6.26□□□□□ -1.41
USP28-215ENST00000545608 UBE2NLQ5JXB2 153 aa6.26□□□□□ -1.41
USP28-215ENST00000545608 LAMTOR1Q6IAA8 161 aa6.26□□□□□ -1.41
USP28-215ENST00000545608 SPSB3Q6PJ21 355 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms