RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 TMEM14EPQ6UXP3 125 aa11.91□□□□□ -0.5
LIMS1-215ENST00000544547 TCF24Q7RTU0 167 aa11.91□□□□□ -0.5
LIMS1-215ENST00000544547 SEPSECSQ9HD40 501 aaKnown RBP11.91□□□□□ -0.5
LIMS1-215ENST00000544547 RFPL3SP0C7P2 107 aa11.91□□□□□ -0.5
LIMS1-215ENST00000544547 TTTY12Q9BZ98 90 aa11.91□□□□□ -0.5
LIMS1-215ENST00000544547 WDR83OSQ9Y284 106 aa11.91□□□□□ -0.5
LIMS1-215ENST00000544547 IGKV1-6A0A0C4DH72 117 aa11.91□□□□□ -0.5
LIMS1-215ENST00000544547 PRB4P10163 310 aaPredicted RBP11.91□□□□□ -0.5
LIMS1-215ENST00000544547 REG1BP48304 166 aa11.91□□□□□ -0.5
LIMS1-215ENST00000544547 SAXO1Q8IYX7 474 aa11.91□□□□□ -0.5
LIMS1-215ENST00000544547 NABP1Q96AH0 204 aa11.91□□□□□ -0.5
LIMS1-215ENST00000544547 TRAV9-1A0A075B6T8 112 aa11.9□□□□□ -0.5
LIMS1-215ENST00000544547 FOXH1O75593 365 aa11.9□□□□□ -0.5
LIMS1-215ENST00000544547 TYMSP04818 313 aa11.9□□□□□ -0.5
LIMS1-215ENST00000544547 MRPL52Q86TS9 123 aaKnown RBP11.9□□□□□ -0.5
LIMS1-215ENST00000544547 IGHV1-69-2A0A0G2JMI3 117 aa11.9□□□□□ -0.5
LIMS1-215ENST00000544547 LMO1P25800 156 aa11.9□□□□□ -0.5
LIMS1-215ENST00000544547 OR10J3Q5JRS4 329 aa11.9□□□□□ -0.5
LIMS1-215ENST00000544547 C16orf97H3BN30 126 aa11.9□□□□□ -0.5
LIMS1-215ENST00000544547 PCOLCEQ15113 449 aa11.9□□□□□ -0.5
LIMS1-215ENST00000544547 TBR1Q16650 682 aa11.9□□□□□ -0.5
LIMS1-215ENST00000544547 SLC35E4Q6ICL7 350 aa11.9□□□□□ -0.5
LIMS1-215ENST00000544547 TEX43Q6ZNM6 134 aa11.9□□□□□ -0.5
LIMS1-215ENST00000544547 WFDC3Q8IUB2 231 aa11.9□□□□□ -0.5
LIMS1-215ENST00000544547 HARBI1Q96MB7 349 aa11.9□□□□□ -0.5
LIMS1-215ENST00000544547 REPIN1Q9BWE0 567 aaKnown RBP11.9□□□□□ -0.5
LIMS1-215ENST00000544547 CHRNA10Q9GZZ6 450 aa11.9□□□□□ -0.5
LIMS1-215ENST00000544547 IGHV1-45A0A0A0MS14 117 aa11.9□□□□□ -0.51
LIMS1-215ENST00000544547 CRYGSP22914 178 aa11.9□□□□□ -0.51
LIMS1-215ENST00000544547 RPL30P62888 115 aaKnown RBP11.9□□□□□ -0.51
LIMS1-215ENST00000544547 CCL8P80075 99 aa11.9□□□□□ -0.51
LIMS1-215ENST00000544547 EFNB3Q15768 340 aa11.9□□□□□ -0.51
LIMS1-215ENST00000544547 C5orf17Q8NAS9 161 aa11.9□□□□□ -0.51
LIMS1-215ENST00000544547 AP5S1Q9NUS5 200 aa11.9□□□□□ -0.51
LIMS1-215ENST00000544547 INSIG2Q9Y5U4 225 aa11.9□□□□□ -0.51
LIMS1-215ENST00000544547 ZNF106Q9H2Y7 1883 aaKnown RBP11.89□□□□□ -0.51
LIMS1-215ENST00000544547 IZUMO1RA6ND01 250 aa11.89□□□□□ -0.51
LIMS1-215ENST00000544547 KLF7O75840 302 aaPredicted RBP11.89□□□□□ -0.51
LIMS1-215ENST00000544547 SCGB1C2P0DMR2 95 aa11.89□□□□□ -0.51
LIMS1-215ENST00000544547 ASPHD1Q5U4P2 390 aa11.89□□□□□ -0.51
LIMS1-215ENST00000544547 HAPLN4Q86UW8 402 aa11.89□□□□□ -0.51
LIMS1-215ENST00000544547 PRR7Q8TB68 274 aa11.89□□□□□ -0.51
LIMS1-215ENST00000544547 TSKUQ8WUA8 353 aa11.89□□□□□ -0.51
LIMS1-215ENST00000544547 A0A1B0GV72 72 aa11.89□□□□□ -0.51
LIMS1-215ENST00000544547 FAM181BA6NEQ2 426 aa11.89□□□□□ -0.51
LIMS1-215ENST00000544547 SH2D7A6NKC9 451 aaPredicted RBP11.89□□□□□ -0.51
LIMS1-215ENST00000544547 LIPFP07098 398 aa11.89□□□□□ -0.51
LIMS1-215ENST00000544547 HBBP68871 147 aa11.89□□□□□ -0.51
LIMS1-215ENST00000544547 RIGQ13278 110 aa11.89□□□□□ -0.51
LIMS1-215ENST00000544547 PCSK4Q6UW60 755 aa11.89□□□□□ -0.51
LIMS1-215ENST00000544547 PNKDQ8N490 385 aa11.89□□□□□ -0.51
LIMS1-215ENST00000544547 A0A0G2JMM0 328 aa11.89□□□□□ -0.51
LIMS1-215ENST00000544547 A0A1W2PPB8 328 aa11.89□□□□□ -0.51
LIMS1-215ENST00000544547 KIR3DP1A8MWS1 328 aa11.89□□□□□ -0.51
LIMS1-215ENST00000544547 HSPE1P61604 102 aaKnown RBP11.89□□□□□ -0.51
LIMS1-215ENST00000544547 TMUB1Q9BVT8 246 aa11.89□□□□□ -0.51
LIMS1-215ENST00000544547 A1L4Q6 167 aa11.88□□□□□ -0.51
LIMS1-215ENST00000544547 K7ESF4 209 aa11.88□□□□□ -0.51
LIMS1-215ENST00000544547 TREML4Q6UXN2 200 aa11.88□□□□□ -0.51
LIMS1-215ENST00000544547 COL25A1Q9BXS0 654 aaPredicted RBP11.88□□□□□ -0.51
LIMS1-215ENST00000544547 STAG3L2P0CL84 134 aa11.88□□□□□ -0.51
LIMS1-215ENST00000544547 STAG3L3P0CL85 134 aa11.88□□□□□ -0.51
LIMS1-215ENST00000544547 OR10AG1Q8NH19 301 aa11.88□□□□□ -0.51
LIMS1-215ENST00000544547 GTSF1LQ9H1H1 148 aa11.88□□□□□ -0.51
LIMS1-215ENST00000544547 IGLV3-19P01714 112 aa11.88□□□□□ -0.51
LIMS1-215ENST00000544547 PRNDQ9UKY0 176 aa11.88□□□□□ -0.51
LIMS1-215ENST00000544547 MRPS18CQ9Y3D5 142 aaKnown RBP11.88□□□□□ -0.51
LIMS1-215ENST00000544547 OR2K2Q8NGT1 345 aa11.88□□□□□ -0.51
LIMS1-215ENST00000544547 PYGO2Q9BRQ0 406 aa11.88□□□□□ -0.51
LIMS1-215ENST00000544547 F5H697 171 aa11.87□□□□□ -0.51
LIMS1-215ENST00000544547 NKX2-8O15522 239 aa11.87□□□□□ -0.51
LIMS1-215ENST00000544547 RCHY1Q96PM5 261 aa11.87□□□□□ -0.51
LIMS1-215ENST00000544547 TICRRQ7Z2Z1 1910 aa11.87□□□□□ -0.51
LIMS1-215ENST00000544547 IGKV3-7A0A075B6H7 116 aa11.87□□□□□ -0.51
LIMS1-215ENST00000544547 PRDX2P32119 198 aa11.87□□□□□ -0.51
LIMS1-215ENST00000544547 ZNF138P52744 262 aa11.87□□□□□ -0.51
LIMS1-215ENST00000544547 RALYQ9UKM9 306 aaKnown RBP11.87□□□□□ -0.51
LIMS1-215ENST00000544547 OR9G9P0C7N8 305 aa11.87□□□□□ -0.51
LIMS1-215ENST00000544547 ZNF585BQ52M93 769 aa11.87□□□□□ -0.51
LIMS1-215ENST00000544547 FAM214BQ7L5A3 538 aa11.87□□□□□ -0.51
LIMS1-215ENST00000544547 ZIC4Q8N9L1 334 aa11.87□□□□□ -0.51
LIMS1-215ENST00000544547 SRSF12Q8WXF0 261 aaKnown RBP11.87□□□□□ -0.51
LIMS1-215ENST00000544547 C18orf15Q96N68 181 aa11.87□□□□□ -0.51
LIMS1-215ENST00000544547 GGTLC1Q9BX51 225 aa11.87□□□□□ -0.51
LIMS1-215ENST00000544547 PKIBQ9C010 78 aa11.87□□□□□ -0.51
LIMS1-215ENST00000544547 OSTCQ9NRP0 149 aa11.87□□□□□ -0.51
LIMS1-215ENST00000544547 APOHP02749 345 aaPredicted RBP11.86□□□□□ -0.51
LIMS1-215ENST00000544547 COX6A1P12074 109 aa11.86□□□□□ -0.51
LIMS1-215ENST00000544547 C1QTNF5Q9BXJ0 243 aa11.86□□□□□ -0.51
LIMS1-215ENST00000544547 C1RLQ9NZP8 487 aa11.86□□□□□ -0.51
LIMS1-215ENST00000544547 PCNX3Q9H6A9 2034 aa11.86□□□□□ -0.51
LIMS1-215ENST00000544547 IL18BPO95998 194 aa11.86□□□□□ -0.51
LIMS1-215ENST00000544547 IGLL1P15814 213 aa11.86□□□□□ -0.51
LIMS1-215ENST00000544547 CDX4O14627 284 aaPredicted RBP11.86□□□□□ -0.51
LIMS1-215ENST00000544547 LGALS7P47929 136 aa11.86□□□□□ -0.51
LIMS1-215ENST00000544547 GNG5P63218 68 aa11.86□□□□□ -0.51
LIMS1-215ENST00000544547 IGKV1-39P01597 117 aa11.86□□□□□ -0.51
LIMS1-215ENST00000544547 IGKV1D-39P04432 117 aa11.86□□□□□ -0.51
LIMS1-215ENST00000544547 FOXG1P55316 489 aaPredicted RBP11.86□□□□□ -0.51
LIMS1-215ENST00000544547 HCP5Q6MZN7 132 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms