RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 FAM186AA6NE01 2351 aa6.55□□□□□ -1.36
VPS13D-211ENST00000543710 SPINK4O60575 86 aa6.55□□□□□ -1.36
VPS13D-211ENST00000543710 CSN3P07498 182 aa6.55□□□□□ -1.36
VPS13D-211ENST00000543710 PRCDQ00LT1 54 aa6.55□□□□□ -1.36
VPS13D-211ENST00000543710 FAM27E3Q08E93 113 aa6.55□□□□□ -1.36
VPS13D-211ENST00000543710 C2orf83Q53S99 150 aa6.55□□□□□ -1.36
VPS13D-211ENST00000543710 ACTL10Q5JWF8 245 aa6.55□□□□□ -1.36
VPS13D-211ENST00000543710 FAM159AQ6UWV7 190 aa6.55□□□□□ -1.36
VPS13D-211ENST00000543710 NUDT10Q8NFP7 164 aa6.55□□□□□ -1.36
VPS13D-211ENST00000543710 IGHV3OR16-10A0A075B7F0 116 aa6.55□□□□□ -1.36
VPS13D-211ENST00000543710 BTCP35070 178 aa6.55□□□□□ -1.36
VPS13D-211ENST00000543710 OR11H4Q8NGC9 324 aa6.55□□□□□ -1.36
VPS13D-211ENST00000543710 TIMP4Q99727 224 aa6.55□□□□□ -1.36
VPS13D-211ENST00000543710 MRPL13Q9BYD1 178 aaKnown RBP6.55□□□□□ -1.36
VPS13D-211ENST00000543710 IGHV3-64DA0A0J9YX35 117 aa6.55□□□□□ -1.36
VPS13D-211ENST00000543710 SAP30O75446 220 aa6.55□□□□□ -1.36
VPS13D-211ENST00000543710 LINC00614P0C842 121 aa6.55□□□□□ -1.36
VPS13D-211ENST00000543710 ZNF324BQ6AW86 544 aaPredicted RBP6.55□□□□□ -1.36
VPS13D-211ENST00000543710 ZIC4Q8N9L1 334 aa6.54□□□□□ -1.36
VPS13D-211ENST00000543710 SRSF12Q8WXF0 261 aaKnown RBP6.54□□□□□ -1.36
VPS13D-211ENST00000543710 NDUFAF3Q9BU61 184 aa6.54□□□□□ -1.36
VPS13D-211ENST00000543710 TLNRD1Q9H1K6 362 aa6.54□□□□□ -1.36
VPS13D-211ENST00000543710 TRAV9-2A0A087WT02 112 aa6.54□□□□□ -1.36
VPS13D-211ENST00000543710 TRAV34A0A0B4J273 112 aa6.54□□□□□ -1.36
VPS13D-211ENST00000543710 CENPVL1A0A0U1RR11 272 aa6.54□□□□□ -1.36
VPS13D-211ENST00000543710 MINOS1Q5TGZ0 78 aa6.54□□□□□ -1.36
VPS13D-211ENST00000543710 MRAP2Q96G30 205 aa6.54□□□□□ -1.36
VPS13D-211ENST00000543710 MINOS1-NBL1R4GNA1 71 aa6.54□□□□□ -1.36
VPS13D-211ENST00000543710 SLC17A3O00476 420 aa6.54□□□□□ -1.36
VPS13D-211ENST00000543710 PRSS2P07478 247 aa6.54□□□□□ -1.36
VPS13D-211ENST00000543710 HTN3P15516 51 aa6.54□□□□□ -1.36
VPS13D-211ENST00000543710 SSTR5P35346 364 aa6.54□□□□□ -1.36
VPS13D-211ENST00000543710 FXYD3Q14802 87 aa6.54□□□□□ -1.36
VPS13D-211ENST00000543710 ZNF488Q96MN9 340 aa6.54□□□□□ -1.36
VPS13D-211ENST00000543710 ANAPC10Q9UM13 185 aa6.54□□□□□ -1.36
VPS13D-211ENST00000543710 PGPEP1LA6NFU8 196 aa6.54□□□□□ -1.36
VPS13D-211ENST00000543710 RRHO14718 337 aa6.54□□□□□ -1.36
VPS13D-211ENST00000543710 PCP4P48539 62 aa6.54□□□□□ -1.36
VPS13D-211ENST00000543710 TSKUQ8WUA8 353 aa6.54□□□□□ -1.36
VPS13D-211ENST00000543710 CREBBPQ92793 2442 aa6.54□□□□□ -1.36
VPS13D-211ENST00000543710 H0YL77 283 aa6.54□□□□□ -1.36
VPS13D-211ENST00000543710 SCGB1A1P11684 91 aa6.54□□□□□ -1.36
VPS13D-211ENST00000543710 SRSF2Q01130 221 aaKnown RBP6.54□□□□□ -1.36
VPS13D-211ENST00000543710 FER1L6-AS1Q8NA97 138 aa6.54□□□□□ -1.36
VPS13D-211ENST00000543710 TRGV9Q99603 122 aa6.54□□□□□ -1.36
VPS13D-211ENST00000543710 GEMIN7Q9H840 131 aaKnown RBP6.54□□□□□ -1.36
VPS13D-211ENST00000543710 LCTP09848 1927 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 FAM223BA6NKX1 122 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 C4orf51C9J302 202 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.53□□□□□ -1.36
VPS13D-211ENST00000543710 HBDP02042 147 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 CRYBB3P26998 211 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 FCGR2BP31994 310 aaPredicted RBP6.53□□□□□ -1.36
VPS13D-211ENST00000543710 RUNX1Q01196 453 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 MRPL14Q6P1L8 145 aaKnown RBP6.53□□□□□ -1.36
VPS13D-211ENST00000543710 ZNF600Q6ZNG1 722 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 FAM223AQ8IWN6 122 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 ZNF843Q8N446 348 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 C10orf126Q8N4M7 172 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 TMEM106BQ9NUM4 274 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 DPM2O94777 84 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 DUTP33316 252 aaKnown RBP6.53□□□□□ -1.36
VPS13D-211ENST00000543710 HINT1P49773 126 aaPredicted RBP6.53□□□□□ -1.36
VPS13D-211ENST00000543710 AMELYQ99218 206 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 RTN4RQ9BZR6 473 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 FAM231BA6NCW3 169 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 M0R1W7 72 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 DNAL4O96015 105 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 PATE4P0C8F1 98 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 PRSS8Q16651 343 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 IGFL3Q6UXB1 125 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 NIT1Q86X76 327 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 WFDC3Q8IUB2 231 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 RHOVQ96L33 236 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 TRAV21A0A0B4J279 112 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 LOC389332A0A1B0GUA5 103 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 LDLRAD4O15165 306 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 GPR183P32249 361 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 ZNF137PP52743 207 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 PPP1R27Q86WC6 154 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 C1orf43Q9BWL3 253 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 Q9H3A6 140 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 GSN-AS1Q9NRJ2 163 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 SEMA5BQ9P283 1151 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 DPM3Q9P2X0 92 aa6.53□□□□□ -1.36
VPS13D-211ENST00000543710 PRKNO60260 465 aaPredicted RBP6.52□□□□□ -1.36
VPS13D-211ENST00000543710 MMP23AO75900 390 aa6.52□□□□□ -1.36
VPS13D-211ENST00000543710 CA1P00915 261 aaPredicted RBP6.52□□□□□ -1.36
VPS13D-211ENST00000543710 CELA3BP08861 270 aa6.52□□□□□ -1.36
VPS13D-211ENST00000543710 CRYGSP22914 178 aa6.52□□□□□ -1.36
VPS13D-211ENST00000543710 PLNP26678 52 aa6.52□□□□□ -1.36
VPS13D-211ENST00000543710 RPL23P62829 140 aaKnown RBP6.52□□□□□ -1.36
VPS13D-211ENST00000543710 COLCA1Q6ZS62 124 aa6.52□□□□□ -1.36
VPS13D-211ENST00000543710 SLC25A48Q6ZT89 311 aaKnown RBP6.52□□□□□ -1.36
VPS13D-211ENST00000543710 ZNF492Q9P255 531 aa6.52□□□□□ -1.36
VPS13D-211ENST00000543710 HILPDAQ9Y5L2 63 aa6.52□□□□□ -1.36
VPS13D-211ENST00000543710 TNFRSF18Q9Y5U5 241 aa6.52□□□□□ -1.36
VPS13D-211ENST00000543710 IGHV2OR16-5A0A0B4J2B6 119 aa6.52□□□□□ -1.37
VPS13D-211ENST00000543710 PSMB11A5LHX3 300 aa6.52□□□□□ -1.37
VPS13D-211ENST00000543710 MSMBP08118 114 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms