RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 MIC13Q5XKP0 118 aa8.01□□□□□ -1.13
SS18-205ENST00000542420 PQLC2Q6ZP29 291 aa8.01□□□□□ -1.13
SS18-205ENST00000542420 CCL17Q92583 94 aa8.01□□□□□ -1.13
SS18-205ENST00000542420 UHRF2Q96PU4 802 aa8.01□□□□□ -1.13
SS18-205ENST00000542420 SRSF8Q9BRL6 282 aaKnown RBP8.01□□□□□ -1.13
SS18-205ENST00000542420 MUC6Q6W4X9 2439 aa8.01□□□□□ -1.13
SS18-205ENST00000542420 GGCTO75223 188 aaKnown RBP8.01□□□□□ -1.13
SS18-205ENST00000542420 IGHV3-7P01780 117 aa8.01□□□□□ -1.13
SS18-205ENST00000542420 IGKV1-16P04430 117 aa8.01□□□□□ -1.13
SS18-205ENST00000542420 OR5G3P0C626 314 aa8.01□□□□□ -1.13
SS18-205ENST00000542420 LINC00869P0C866 280 aa8.01□□□□□ -1.13
SS18-205ENST00000542420 ZNF672Q499Z4 452 aaPredicted RBP8.01□□□□□ -1.13
SS18-205ENST00000542420 PRR30Q53SZ7 412 aaPredicted RBP8.01□□□□□ -1.13
SS18-205ENST00000542420 ETFRF1Q6IPR1 90 aa8.01□□□□□ -1.13
SS18-205ENST00000542420 KCNIP4Q6PIL6 250 aa8.01□□□□□ -1.13
SS18-205ENST00000542420 C16orf82Q7Z2V1 217 aa8.01□□□□□ -1.13
SS18-205ENST00000542420 RPUSD4Q96CM3 377 aaKnown RBP8.01□□□□□ -1.13
SS18-205ENST00000542420 TECRQ9NZ01 308 aaKnown RBP8.01□□□□□ -1.13
SS18-205ENST00000542420 FUT9Q9Y231 359 aa8.01□□□□□ -1.13
SS18-205ENST00000542420 CEP250Q9BV73 2442 aa8□□□□□ -1.13
SS18-205ENST00000542420 IGLV2-23P01705 113 aa8□□□□□ -1.13
SS18-205ENST00000542420 ARL14EPLP0DKL9 152 aa8□□□□□ -1.13
SS18-205ENST00000542420 CCL3L1P16619 93 aa8□□□□□ -1.13
SS18-205ENST00000542420 FAM3BP58499 235 aaPredicted RBP8□□□□□ -1.13
SS18-205ENST00000542420 SELENOTP62341 195 aa8□□□□□ -1.13
SS18-205ENST00000542420 DMRTA1Q5VZB9 504 aa8□□□□□ -1.13
SS18-205ENST00000542420 LYPD2Q6UXB3 125 aa8□□□□□ -1.13
SS18-205ENST00000542420 THAP8Q8NA92 274 aa8□□□□□ -1.13
SS18-205ENST00000542420 OR51G1Q8NGK1 321 aa8□□□□□ -1.13
SS18-205ENST00000542420 GATAD1Q8WUU5 269 aa8□□□□□ -1.13
SS18-205ENST00000542420 H1FXQ92522 213 aaKnown RBP8□□□□□ -1.13
SS18-205ENST00000542420 COL25A1Q9BXS0 654 aaPredicted RBP8□□□□□ -1.13
SS18-205ENST00000542420 CBLN4Q9NTU7 201 aa8□□□□□ -1.13
SS18-205ENST00000542420 GNB1P62873 340 aa8□□□□□ -1.13
SS18-205ENST00000542420 SH3BGRL2Q9UJC5 107 aa8□□□□□ -1.13
SS18-205ENST00000542420 RIF1Q5UIP0 2472 aaKnown RBP7.99□□□□□ -1.13
SS18-205ENST00000542420 ACACAQ13085 2346 aa7.99□□□□□ -1.13
SS18-205ENST00000542420 KIR2DL5BA0A0G2JN68 375 aa7.99□□□□□ -1.13
SS18-205ENST00000542420 KIR2DL5BA0A0G2JPC4 375 aa7.99□□□□□ -1.13
SS18-205ENST00000542420 CORTO00230 105 aa7.99□□□□□ -1.13
SS18-205ENST00000542420 IGLV1-47P01700 117 aa7.99□□□□□ -1.13
SS18-205ENST00000542420 FAM87AP0C7U9 286 aa7.99□□□□□ -1.13
SS18-205ENST00000542420 GALR1P47211 349 aa7.99□□□□□ -1.13
SS18-205ENST00000542420 RPS16P62249 146 aaKnown RBP7.99□□□□□ -1.13
SS18-205ENST00000542420 FOXL1Q12952 345 aa7.99□□□□□ -1.13
SS18-205ENST00000542420 TEX38Q6PEX7 206 aa7.99□□□□□ -1.13
SS18-205ENST00000542420 LINC01551Q86U37 167 aa7.99□□□□□ -1.13
SS18-205ENST00000542420 MMD2Q8IY49 270 aa7.99□□□□□ -1.13
SS18-205ENST00000542420 KIR2DL5AQ8N109 375 aa7.99□□□□□ -1.13
SS18-205ENST00000542420 MUC15Q8N387 334 aa7.99□□□□□ -1.13
SS18-205ENST00000542420 C11orf42Q8N5U0 333 aa7.99□□□□□ -1.13
SS18-205ENST00000542420 OR4P4Q8NGL7 312 aa7.99□□□□□ -1.13
SS18-205ENST00000542420 OR1L4Q8NGR5 311 aa7.99□□□□□ -1.13
SS18-205ENST00000542420 RNASE8Q8TDE3 154 aaKnown RBP7.99□□□□□ -1.13
SS18-205ENST00000542420 IGFBP2P18065 325 aa7.98□□□□□ -1.13
SS18-205ENST00000542420 ERVFC1-1P60608 527 aa7.98□□□□□ -1.13
SS18-205ENST00000542420 COA6Q5JTJ3 125 aaKnown RBP7.98□□□□□ -1.13
SS18-205ENST00000542420 ZNF841Q6ZN19 808 aa7.98□□□□□ -1.13
SS18-205ENST00000542420 TMEM183AQ8IXX5 376 aa7.98□□□□□ -1.13
SS18-205ENST00000542420 LY6G5BQ8NDX9 201 aa7.98□□□□□ -1.13
SS18-205ENST00000542420 NEU4Q8WWR8 484 aaPredicted RBP7.98□□□□□ -1.13
SS18-205ENST00000542420 PATZ1Q9HBE1 687 aaKnown RBP7.98□□□□□ -1.13
SS18-205ENST00000542420 PITPNC1Q9UKF7 332 aa7.98□□□□□ -1.13
SS18-205ENST00000542420 A0A1W2PRE2 83 aa7.98□□□□□ -1.13
SS18-205ENST00000542420 HMGB3O15347 200 aaKnown RBP7.98□□□□□ -1.13
SS18-205ENST00000542420 RPLP1P05386 114 aaKnown RBP7.98□□□□□ -1.13
SS18-205ENST00000542420 CRYGBP07316 175 aa7.98□□□□□ -1.13
SS18-205ENST00000542420 NPPCP23582 126 aa7.98□□□□□ -1.13
SS18-205ENST00000542420 GCSAMLQ5JQS6 135 aa7.98□□□□□ -1.13
SS18-205ENST00000542420 CLEC7AQ9BXN2 247 aa7.98□□□□□ -1.13
SS18-205ENST00000542420 RAB1BQ9H0U4 201 aa7.98□□□□□ -1.13
SS18-205ENST00000542420 URGCP-MRPS24S4R325 110 aa7.98□□□□□ -1.13
SS18-205ENST00000542420 CCL21O00585 134 aa7.97□□□□□ -1.13
SS18-205ENST00000542420 CRYGCP07315 174 aa7.97□□□□□ -1.13
SS18-205ENST00000542420 ATP5G3P48201 142 aa7.97□□□□□ -1.13
SS18-205ENST00000542420 NHLH1Q02575 133 aa7.97□□□□□ -1.13
SS18-205ENST00000542420 CST9LP1Q5W188 147 aa7.97□□□□□ -1.13
SS18-205ENST00000542420 MRPL52Q86TS9 123 aaKnown RBP7.97□□□□□ -1.13
SS18-205ENST00000542420 PIP4P2Q8N4L2 257 aa7.97□□□□□ -1.13
SS18-205ENST00000542420 OR8B3Q8NGG8 313 aa7.97□□□□□ -1.13
SS18-205ENST00000542420 ACY3Q96HD9 319 aa7.97□□□□□ -1.13
SS18-205ENST00000542420 OR8B2Q96RD0 313 aa7.97□□□□□ -1.13
SS18-205ENST00000542420 HINT2Q9BX68 163 aa7.97□□□□□ -1.13
SS18-205ENST00000542420 ZNF430Q9H8G1 570 aaPredicted RBP7.97□□□□□ -1.13
SS18-205ENST00000542420 APC2O95996 2303 aa7.97□□□□□ -1.13
SS18-205ENST00000542420 ICE1Q9Y2F5 2266 aa7.97□□□□□ -1.13
SS18-205ENST00000542420 IGHV2-26A0A0B4J1V2 119 aa7.97□□□□□ -1.13
SS18-205ENST00000542420 PPP5D1E7EU14 171 aa7.97□□□□□ -1.13
SS18-205ENST00000542420 GCGP01275 180 aa7.97□□□□□ -1.13
SS18-205ENST00000542420 C8orf88P0DMB2 117 aa7.97□□□□□ -1.13
SS18-205ENST00000542420 ZCCHC24Q8N2G6 241 aaKnown RBP7.97□□□□□ -1.13
SS18-205ENST00000542420 OR2T10Q8NGZ9 312 aa7.97□□□□□ -1.13
SS18-205ENST00000542420 SSMEM1Q8WWF3 244 aa7.97□□□□□ -1.13
SS18-205ENST00000542420 LPAR2Q9HBW0 351 aa7.97□□□□□ -1.13
SS18-205ENST00000542420 MDFIC2A0A1B0GVS7 189 aa7.96□□□□□ -1.13
SS18-205ENST00000542420 PSMB11A5LHX3 300 aa7.96□□□□□ -1.13
SS18-205ENST00000542420 M0R1W7 72 aa7.96□□□□□ -1.13
SS18-205ENST00000542420 OR10J4P0C629 311 aa7.96□□□□□ -1.13
SS18-205ENST00000542420 OR10J1P30954 320 aa7.96□□□□□ -1.13
SS18-205ENST00000542420 FAM78BQ5VT40 261 aa7.96□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms