RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 HES1Q14469 280 aa11.63□□□□□ -0.55
CLIP1-216ENST00000541410 MMDQ15546 238 aa11.63□□□□□ -0.55
CLIP1-216ENST00000541410 RBMS3Q6XE24 437 aaKnown RBP11.63□□□□□ -0.55
CLIP1-216ENST00000541410 SLC16A13Q7RTY0 426 aa11.63□□□□□ -0.55
CLIP1-216ENST00000541410 PPP1R27Q86WC6 154 aa11.63□□□□□ -0.55
CLIP1-216ENST00000541410 IGLC7A0M8Q6 106 aa11.63□□□□□ -0.55
CLIP1-216ENST00000541410 SEC14L6B5MCN3 397 aa11.63□□□□□ -0.55
CLIP1-216ENST00000541410 VENTXO95231 258 aa11.63□□□□□ -0.55
CLIP1-216ENST00000541410 CRYGBP07316 175 aa11.63□□□□□ -0.55
CLIP1-216ENST00000541410 LINC00869P0C866 280 aa11.63□□□□□ -0.55
CLIP1-216ENST00000541410 RPL27AP46776 148 aaKnown RBP11.63□□□□□ -0.55
CLIP1-216ENST00000541410 RAB31Q13636 194 aa11.63□□□□□ -0.55
CLIP1-216ENST00000541410 CST9LP1Q5W188 147 aa11.63□□□□□ -0.55
CLIP1-216ENST00000541410 TMEM144Q7Z5S9 345 aa11.63□□□□□ -0.55
CLIP1-216ENST00000541410 OR11H6Q8NGC7 330 aa11.63□□□□□ -0.55
CLIP1-216ENST00000541410 OR51G1Q8NGK1 321 aa11.63□□□□□ -0.55
CLIP1-216ENST00000541410 MISP3Q96FF7 219 aa11.63□□□□□ -0.55
CLIP1-216ENST00000541410 UNKLQ9H9P5 680 aaKnown RBP11.63□□□□□ -0.55
CLIP1-216ENST00000541410 COLCA2A8K830 154 aa11.62□□□□□ -0.55
CLIP1-216ENST00000541410 ATP5G3P48201 142 aa11.62□□□□□ -0.55
CLIP1-216ENST00000541410 MFAP2P55001 183 aa11.62□□□□□ -0.55
CLIP1-216ENST00000541410 MMD2Q8IY49 270 aa11.62□□□□□ -0.55
CLIP1-216ENST00000541410 FAM24BQ8N5W8 94 aa11.62□□□□□ -0.55
CLIP1-216ENST00000541410 TEX45Q8NA69 505 aa11.62□□□□□ -0.55
CLIP1-216ENST00000541410 NPIPB3Q92617 1050 aa11.62□□□□□ -0.55
CLIP1-216ENST00000541410 NRGNQ92686 78 aa11.62□□□□□ -0.55
CLIP1-216ENST00000541410 M0R1W7 72 aa11.62□□□□□ -0.55
CLIP1-216ENST00000541410 PRR20EP86478 221 aa11.62□□□□□ -0.55
CLIP1-216ENST00000541410 PRR20CP86479 221 aa11.62□□□□□ -0.55
CLIP1-216ENST00000541410 PRR20DP86480 221 aa11.62□□□□□ -0.55
CLIP1-216ENST00000541410 PRR20BP86481 221 aa11.62□□□□□ -0.55
CLIP1-216ENST00000541410 PRR20AP86496 221 aa11.62□□□□□ -0.55
CLIP1-216ENST00000541410 FAM78BQ5VT40 261 aa11.62□□□□□ -0.55
CLIP1-216ENST00000541410 MIR17HGQ75NE6 70 aa11.62□□□□□ -0.55
CLIP1-216ENST00000541410 ZFP82Q8N141 532 aa11.62□□□□□ -0.55
CLIP1-216ENST00000541410 TVP23CQ96ET8 276 aa11.62□□□□□ -0.55
CLIP1-216ENST00000541410 FAM103A1Q9BTL3 118 aaKnown RBP11.62□□□□□ -0.55
CLIP1-216ENST00000541410 SLC45A2Q9UMX9 530 aa11.62□□□□□ -0.55
CLIP1-216ENST00000541410 URGCP-MRPS24S4R325 110 aa11.62□□□□□ -0.55
CLIP1-216ENST00000541410 RPL29P47914 159 aaKnown RBP11.61□□□□□ -0.55
CLIP1-216ENST00000541410 ZNF90Q03938 601 aa11.61□□□□□ -0.55
CLIP1-216ENST00000541410 SPNS3Q6ZMD2 512 aa11.61□□□□□ -0.55
CLIP1-216ENST00000541410 DOK5Q9P104 306 aa11.61□□□□□ -0.55
CLIP1-216ENST00000541410 CENPEQ02224 2701 aa11.61□□□□□ -0.55
CLIP1-216ENST00000541410 C11orf94C9JXX5 98 aa11.61□□□□□ -0.55
CLIP1-216ENST00000541410 OVOL3O00110 214 aa11.61□□□□□ -0.55
CLIP1-216ENST00000541410 CRYBA1P05813 215 aa11.61□□□□□ -0.55
CLIP1-216ENST00000541410 HOXB4P17483 251 aaPredicted RBP11.61□□□□□ -0.55
CLIP1-216ENST00000541410 COMPP49747 757 aaPredicted RBP11.61□□□□□ -0.55
CLIP1-216ENST00000541410 RHEBQ15382 184 aa11.61□□□□□ -0.55
CLIP1-216ENST00000541410 ZNF343Q6P1L6 599 aa11.61□□□□□ -0.55
CLIP1-216ENST00000541410 CFHR4Q92496 578 aa11.61□□□□□ -0.55
CLIP1-216ENST00000541410 SLC35E1Q96K37 410 aa11.61□□□□□ -0.55
CLIP1-216ENST00000541410 ODF3BA8MYP8 253 aa11.6□□□□□ -0.55
CLIP1-216ENST00000541410 LMO4P61968 165 aa11.6□□□□□ -0.55
CLIP1-216ENST00000541410 SMIM7Q9BQ49 75 aa11.6□□□□□ -0.55
CLIP1-216ENST00000541410 CNIH1O95406 144 aa11.6□□□□□ -0.55
CLIP1-216ENST00000541410 STAG3L2P0CL84 134 aa11.6□□□□□ -0.55
CLIP1-216ENST00000541410 STAG3L3P0CL85 134 aa11.6□□□□□ -0.55
CLIP1-216ENST00000541410 RND2P52198 227 aa11.6□□□□□ -0.55
CLIP1-216ENST00000541410 OR5T1Q8NG75 326 aa11.6□□□□□ -0.55
CLIP1-216ENST00000541410 SRSF12Q8WXF0 261 aaKnown RBP11.6□□□□□ -0.55
CLIP1-216ENST00000541410 CCL19Q99731 98 aa11.6□□□□□ -0.55
CLIP1-216ENST00000541410 SLC25A33Q9BSK2 321 aa11.6□□□□□ -0.55
CLIP1-216ENST00000541410 GSX1Q9H4S2 264 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-216ENST00000541410 MANBALQ9NQG1 85 aa11.6□□□□□ -0.55
CLIP1-216ENST00000541410 AURKAIP1Q9NWT8 199 aaPredicted RBP11.6□□□□□ -0.55
CLIP1-216ENST00000541410 LRRK2Q5S007 2527 aa11.59□□□□□ -0.55
CLIP1-216ENST00000541410 OR2C1O95371 312 aa11.59□□□□□ -0.55
CLIP1-216ENST00000541410 SNRPCP09234 159 aaKnown RBP11.59□□□□□ -0.55
CLIP1-216ENST00000541410 NPPCP23582 126 aa11.59□□□□□ -0.55
CLIP1-216ENST00000541410 SUB1P53999 127 aaKnown RBP eCLIP11.59□□□□□ -0.55
CLIP1-216ENST00000541410 C2CD4CQ8TF44 421 aa11.59□□□□□ -0.55
CLIP1-216ENST00000541410 HIST1H2BAQ96A08 127 aa11.59□□□□□ -0.55
CLIP1-216ENST00000541410 DERL1Q9BUN8 251 aa11.59□□□□□ -0.55
CLIP1-216ENST00000541410 SIRPDQ9H106 197 aa11.59□□□□□ -0.55
CLIP1-216ENST00000541410 PARLQ9H300 379 aa11.59□□□□□ -0.55
CLIP1-216ENST00000541410 TEX22C9J3V5 150 aa11.59□□□□□ -0.55
CLIP1-216ENST00000541410 TOX4O94842 621 aa11.59□□□□□ -0.55
CLIP1-216ENST00000541410 MOSP00540 346 aa11.59□□□□□ -0.55
CLIP1-216ENST00000541410 CEACAM3P40198 252 aa11.59□□□□□ -0.55
CLIP1-216ENST00000541410 RHOBP62745 196 aa11.59□□□□□ -0.55
CLIP1-216ENST00000541410 PAX2Q02962 417 aa11.59□□□□□ -0.55
CLIP1-216ENST00000541410 MORN5Q5VZ52 161 aa11.59□□□□□ -0.55
CLIP1-216ENST00000541410 EAF1Q96JC9 268 aaPredicted RBP11.59□□□□□ -0.55
CLIP1-216ENST00000541410 UHRF2Q96PU4 802 aa11.59□□□□□ -0.55
CLIP1-216ENST00000541410 MLXQ9UH92 298 aa11.59□□□□□ -0.55
CLIP1-216ENST00000541410 DMRT1Q9Y5R6 373 aa11.59□□□□□ -0.55
CLIP1-216ENST00000541410 IGHV3OR16-10A0A075B7F0 116 aa11.58□□□□□ -0.56
CLIP1-216ENST00000541410 IGHV2-70DA0A0C4DH43 119 aa11.58□□□□□ -0.56
CLIP1-216ENST00000541410 INS-IGF2F8WCM5 200 aa11.58□□□□□ -0.56
CLIP1-216ENST00000541410 OR10J4P0C629 311 aa11.58□□□□□ -0.56
CLIP1-216ENST00000541410 ADIRFQ15847 76 aa11.58□□□□□ -0.56
CLIP1-216ENST00000541410 TMEM37Q8WXS4 190 aa11.58□□□□□ -0.56
CLIP1-216ENST00000541410 KCNIP2Q9NS61 270 aa11.58□□□□□ -0.56
CLIP1-216ENST00000541410 POLQO75417 2590 aa11.58□□□□□ -0.56
CLIP1-216ENST00000541410 TRAV5A0A0B4J249 113 aa11.57□□□□□ -0.56
CLIP1-216ENST00000541410 A1L4Q6 167 aa11.57□□□□□ -0.56
CLIP1-216ENST00000541410 NCBP2LA6PVI3 153 aaKnown RBP11.57□□□□□ -0.56
CLIP1-216ENST00000541410 FNDC10F2Z333 226 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms