RNA–Protein interactions for RNA: ENST00000540183.1

SEMA4D-222, Transcript of semaphorin 4D, human

TSL 3

Gene SEMA4D, Length 176 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4D-222	ENST00000540183	LYSMD2	Q8IV50	215 aa		10.39	□□□□□ -0.75
SEMA4D-222	ENST00000540183	BORCS5	Q969J3	196 aa		10.39	□□□□□ -0.75
SEMA4D-222	ENST00000540183	DFFB	O76075	338 aa		10.38	□□□□□ -0.75
SEMA4D-222	ENST00000540183	NAT1	P18440	290 aa		10.38	□□□□□ -0.75
SEMA4D-222	ENST00000540183	HLA-DMA	P28067	261 aa		10.38	□□□□□ -0.75
SEMA4D-222	ENST00000540183	HRH1	P35367	487 aa		10.38	□□□□□ -0.75
SEMA4D-222	ENST00000540183	DEFB131A	P59861	70 aa		10.38	□□□□□ -0.75
SEMA4D-222	ENST00000540183	TMEM69	Q5SWH9	247 aa		10.38	□□□□□ -0.75
SEMA4D-222	ENST00000540183	TOMM20L	Q6UXN7	152 aa		10.38	□□□□□ -0.75
SEMA4D-222	ENST00000540183	TBC1D26	Q86UD7	250 aa		10.38	□□□□□ -0.75
SEMA4D-222	ENST00000540183	CADM3	Q8N126	398 aa		10.38	□□□□□ -0.75
SEMA4D-222	ENST00000540183	S100A16	Q96FQ6	103 aa	Known RBP	10.38	□□□□□ -0.75
SEMA4D-222	ENST00000540183	SEC22A	Q96IW7	307 aa		10.38	□□□□□ -0.75
SEMA4D-222	ENST00000540183	MFF	Q9GZY8	342 aa		10.38	□□□□□ -0.75
SEMA4D-222	ENST00000540183	MS4A6A	Q9H2W1	248 aa		10.38	□□□□□ -0.75
SEMA4D-222	ENST00000540183	APLN	Q9ULZ1	77 aa		10.38	□□□□□ -0.75
SEMA4D-222	ENST00000540183	RYR1	P21817	5038 aa		10.37	□□□□□ -0.75
SEMA4D-222	ENST00000540183	ST8SIA3	O43173	380 aa		10.37	□□□□□ -0.75
SEMA4D-222	ENST00000540183	GNG7	O60262	68 aa		10.37	□□□□□ -0.75
SEMA4D-222	ENST00000540183	IFNA4	P05014	189 aa		10.37	□□□□□ -0.75
SEMA4D-222	ENST00000540183	TAS2R46	P59540	309 aa		10.37	□□□□□ -0.75
SEMA4D-222	ENST00000540183	PRCD	Q00LT1	54 aa		10.37	□□□□□ -0.75
SEMA4D-222	ENST00000540183	UBE2NL	Q5JXB2	153 aa		10.37	□□□□□ -0.75
SEMA4D-222	ENST00000540183	CMTM1	Q8IZ96	169 aa		10.37	□□□□□ -0.75
SEMA4D-222	ENST00000540183	SAMD12	Q8N8I0	201 aa		10.37	□□□□□ -0.75
SEMA4D-222	ENST00000540183	C2CD4C	Q8TF44	421 aa		10.37	□□□□□ -0.75
SEMA4D-222	ENST00000540183	MRGPRF	Q96AM1	343 aa		10.37	□□□□□ -0.75
SEMA4D-222	ENST00000540183	CMTM3	Q96MX0	182 aa		10.37	□□□□□ -0.75
SEMA4D-222	ENST00000540183	TXN2	Q99757	166 aa		10.37	□□□□□ -0.75
SEMA4D-222	ENST00000540183	ZFAND3	Q9H8U3	227 aa		10.37	□□□□□ -0.75
SEMA4D-222	ENST00000540183	FKBP11	Q9NYL4	201 aa		10.37	□□□□□ -0.75
SEMA4D-222	ENST00000540183		A0A1B0GU03	582 aa		10.36	□□□□□ -0.75
SEMA4D-222	ENST00000540183	IGLL5	B9A064	214 aa		10.36	□□□□□ -0.75
SEMA4D-222	ENST00000540183	GIG44	P09565	113 aa	Predicted RBP	10.36	□□□□□ -0.75
SEMA4D-222	ENST00000540183	RBMY1A1	P0DJD3	496 aa	Known RBP	10.36	□□□□□ -0.75
SEMA4D-222	ENST00000540183	RBMY1C	P0DJD4	496 aa		10.36	□□□□□ -0.75
SEMA4D-222	ENST00000540183	RPS19	P39019	145 aa	Known RBP	10.36	□□□□□ -0.75
SEMA4D-222	ENST00000540183	CMC4	P56277	68 aa	Predicted RBP	10.36	□□□□□ -0.75
SEMA4D-222	ENST00000540183	LSM3	P62310	102 aa	Known RBP	10.36	□□□□□ -0.75
SEMA4D-222	ENST00000540183	TMEM187	Q14656	261 aa		10.36	□□□□□ -0.75
SEMA4D-222	ENST00000540183	RBMY1F	Q15415	496 aa	Known RBP	10.36	□□□□□ -0.75
SEMA4D-222	ENST00000540183	H2BFWT	Q7Z2G1	175 aa		10.36	□□□□□ -0.75
SEMA4D-222	ENST00000540183		Q8NAQ8	132 aa		10.36	□□□□□ -0.75
SEMA4D-222	ENST00000540183	ZNF114	Q8NC26	417 aa		10.36	□□□□□ -0.75
SEMA4D-222	ENST00000540183	OR6F1	Q8NGZ6	308 aa		10.36	□□□□□ -0.75
SEMA4D-222	ENST00000540183	OR4A16	Q8NH70	328 aa		10.36	□□□□□ -0.75
SEMA4D-222	ENST00000540183	TSC22D3	Q99576	134 aa		10.36	□□□□□ -0.75
SEMA4D-222	ENST00000540183	YTHDF1	Q9BYJ9	559 aa	Known RBP	10.36	□□□□□ -0.75
SEMA4D-222	ENST00000540183	VSIR	Q9H7M9	311 aa		10.36	□□□□□ -0.75
SEMA4D-222	ENST00000540183	MRPL36	Q9P0J6	103 aa	Known RBP	10.36	□□□□□ -0.75
SEMA4D-222	ENST00000540183	PUS1	Q9Y606	427 aa	Known RBP eCLIP	10.36	□□□□□ -0.75
SEMA4D-222	ENST00000540183	DNASE2	O00115	360 aa	Predicted RBP	10.35	□□□□□ -0.75
SEMA4D-222	ENST00000540183	ATP6V1G2	O95670	118 aa		10.35	□□□□□ -0.75
SEMA4D-222	ENST00000540183	EIF4E	P06730	217 aa	Known RBP	10.35	□□□□□ -0.75
SEMA4D-222	ENST00000540183	PRSS3	P35030	304 aa		10.35	□□□□□ -0.75
SEMA4D-222	ENST00000540183	RPL11	P62913	178 aa	Known RBP	10.35	□□□□□ -0.75
SEMA4D-222	ENST00000540183	DNAH11	Q96DT5	4516 aa		10.34	□□□□□ -0.75
SEMA4D-222	ENST00000540183	PKD1	P98161	4303 aa		10.34	□□□□□ -0.75
SEMA4D-222	ENST00000540183	IGHV4-28	A0A0C4DH34	117 aa		10.34	□□□□□ -0.75
SEMA4D-222	ENST00000540183	C4BPB	P20851	252 aa		10.34	□□□□□ -0.75
SEMA4D-222	ENST00000540183	PPP5C	P53041	499 aa		10.34	□□□□□ -0.75
SEMA4D-222	ENST00000540183	HSPE1	P61604	102 aa	Known RBP	10.34	□□□□□ -0.75
SEMA4D-222	ENST00000540183	TSPAN5	P62079	268 aa		10.34	□□□□□ -0.75
SEMA4D-222	ENST00000540183	PAFAH1B2	P68402	229 aa		10.34	□□□□□ -0.75
SEMA4D-222	ENST00000540183	GINS3	Q9BRX5	216 aa		10.34	□□□□□ -0.75
SEMA4D-222	ENST00000540183	RABAC1	Q9UI14	185 aa		10.34	□□□□□ -0.75
SEMA4D-222	ENST00000540183	KNCN	A6PVL3	124 aa		10.33	□□□□□ -0.76
SEMA4D-222	ENST00000540183	TMEM50A	O95807	157 aa		10.33	□□□□□ -0.76
SEMA4D-222	ENST00000540183	IGKV1-5	P01602	117 aa		10.33	□□□□□ -0.76
SEMA4D-222	ENST00000540183	PI3	P19957	117 aa		10.33	□□□□□ -0.76
SEMA4D-222	ENST00000540183	MLANA	Q16655	118 aa		10.33	□□□□□ -0.76
SEMA4D-222	ENST00000540183	ZNF600	Q6ZNG1	722 aa		10.33	□□□□□ -0.76
SEMA4D-222	ENST00000540183	STH	Q8IWL8	128 aa		10.33	□□□□□ -0.76
SEMA4D-222	ENST00000540183	GPX8	Q8TED1	209 aa		10.33	□□□□□ -0.76
SEMA4D-222	ENST00000540183	CLEC5A	Q9NY25	188 aa		10.33	□□□□□ -0.76
SEMA4D-222	ENST00000540183	ELOA3C	A0A087WX78	387 aa	Predicted RBP	10.32	□□□□□ -0.76
SEMA4D-222	ENST00000540183		M0QYG6	137 aa		10.32	□□□□□ -0.76
SEMA4D-222	ENST00000540183	HLA-DMB	P28068	263 aa		10.32	□□□□□ -0.76
SEMA4D-222	ENST00000540183	ERH	P84090	104 aa	Known RBP	10.32	□□□□□ -0.76
SEMA4D-222	ENST00000540183		Q6ZTC4	211 aa		10.32	□□□□□ -0.76
SEMA4D-222	ENST00000540183	ZNF767P	Q75MW2	155 aa		10.32	□□□□□ -0.76
SEMA4D-222	ENST00000540183	TRPT1	Q86TN4	253 aa	Known RBP	10.32	□□□□□ -0.76
SEMA4D-222	ENST00000540183	SNX29P2	Q8IUI4	249 aa		10.32	□□□□□ -0.76
SEMA4D-222	ENST00000540183	DUSP18	Q8NEJ0	188 aa		10.32	□□□□□ -0.76
SEMA4D-222	ENST00000540183	STXBP6	Q8NFX7	210 aa		10.32	□□□□□ -0.76
SEMA4D-222	ENST00000540183		Q9H521	79 aa		10.32	□□□□□ -0.76
SEMA4D-222	ENST00000540183	FNDC4	Q9H6D8	234 aa	Predicted RBP	10.32	□□□□□ -0.76
SEMA4D-222	ENST00000540183	FAM212B	Q9NTI7	297 aa	Predicted RBP	10.32	□□□□□ -0.76
SEMA4D-222	ENST00000540183		X6R8D5	127 aa		10.32	□□□□□ -0.76
SEMA4D-222	ENST00000540183		A0A0B4J293	547 aa		10.31	□□□□□ -0.76
SEMA4D-222	ENST00000540183		K7EQG2	157 aa		10.31	□□□□□ -0.76
SEMA4D-222	ENST00000540183	ZNF688	P0C7X2	276 aa		10.31	□□□□□ -0.76
SEMA4D-222	ENST00000540183	RNASE2	P10153	161 aa	Known RBP	10.31	□□□□□ -0.76
SEMA4D-222	ENST00000540183	NPBWR1	P48145	328 aa		10.31	□□□□□ -0.76
SEMA4D-222	ENST00000540183	RNASE12	Q5GAN4	147 aa	Known RBP	10.31	□□□□□ -0.76
SEMA4D-222	ENST00000540183	LPCAT3	Q6P1A2	487 aa		10.31	□□□□□ -0.76
SEMA4D-222	ENST00000540183	CROCCP3	Q8IVE0	287 aa		10.31	□□□□□ -0.76
SEMA4D-222	ENST00000540183	SLC35G3	Q8N808	338 aa		10.31	□□□□□ -0.76
SEMA4D-222	ENST00000540183	YIPF6	Q96EC8	236 aa		10.31	□□□□□ -0.76
SEMA4D-222	ENST00000540183	TP53RK	Q96S44	253 aa		10.31	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms