RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 MUC15Q8N387 334 aa8.75□□□□□ -1.01
CLIP1-210ENST00000538120 TMEM170AQ8WVE7 144 aa8.75□□□□□ -1.01
CLIP1-210ENST00000538120 NDUFAF3Q9BU61 184 aa8.75□□□□□ -1.01
CLIP1-210ENST00000538120 SPTA1P02549 2419 aa8.75□□□□□ -1.01
CLIP1-210ENST00000538120 LYNX1G3V0Z9 82 aa8.75□□□□□ -1.01
CLIP1-210ENST00000538120 RBMXL2O75526 392 aaKnown RBP8.75□□□□□ -1.01
CLIP1-210ENST00000538120 LYNX1P0DP58 116 aa8.75□□□□□ -1.01
CLIP1-210ENST00000538120 COL8A2P25067 703 aa8.75□□□□□ -1.01
CLIP1-210ENST00000538120 DLX6P56179 175 aa8.75□□□□□ -1.01
CLIP1-210ENST00000538120 PDLIM3Q53GG5 364 aaPredicted RBP8.75□□□□□ -1.01
CLIP1-210ENST00000538120 OR4S2Q8NH73 311 aa8.75□□□□□ -1.01
CLIP1-210ENST00000538120 ZNF714Q96N38 554 aa8.75□□□□□ -1.01
CLIP1-210ENST00000538120 GAL3ST2Q9H3Q3 398 aa8.75□□□□□ -1.01
CLIP1-210ENST00000538120 NCOR2Q9Y618 2525 aa8.74□□□□□ -1.01
CLIP1-210ENST00000538120 TMEM250H0YL14 139 aa8.74□□□□□ -1.01
CLIP1-210ENST00000538120 CRYGCP07315 174 aa8.74□□□□□ -1.01
CLIP1-210ENST00000538120 LINC00614P0C842 121 aa8.74□□□□□ -1.01
CLIP1-210ENST00000538120 PDLIM4P50479 330 aa8.74□□□□□ -1.01
CLIP1-210ENST00000538120 LRRC10Q5BKY1 277 aa8.74□□□□□ -1.01
CLIP1-210ENST00000538120 ACTL10Q5JWF8 245 aa8.74□□□□□ -1.01
CLIP1-210ENST00000538120 FFAR4Q5NUL3 377 aa8.74□□□□□ -1.01
CLIP1-210ENST00000538120 OR52E5Q8NH55 327 aa8.74□□□□□ -1.01
CLIP1-210ENST00000538120 GLMPQ8WWB7 406 aa8.74□□□□□ -1.01
CLIP1-210ENST00000538120 CIB3Q96Q77 187 aaPredicted RBP8.74□□□□□ -1.01
CLIP1-210ENST00000538120 ARFGEF3Q5TH69 2177 aa8.74□□□□□ -1.01
CLIP1-210ENST00000538120 CTXND1A0A1B0GTU2 59 aa8.74□□□□□ -1.01
CLIP1-210ENST00000538120 C15orf62A8K5M9 175 aa8.74□□□□□ -1.01
CLIP1-210ENST00000538120 NUPR1O60356 82 aa8.74□□□□□ -1.01
CLIP1-210ENST00000538120 VDAC2P45880 294 aaPredicted RBP8.74□□□□□ -1.01
CLIP1-210ENST00000538120 SLAQ13239 276 aa8.74□□□□□ -1.01
CLIP1-210ENST00000538120 GCSAMLQ5JQS6 135 aa8.74□□□□□ -1.01
CLIP1-210ENST00000538120 Q5PR19 223 aa8.74□□□□□ -1.01
CLIP1-210ENST00000538120 ZNF833PQ6ZTB9 187 aa8.74□□□□□ -1.01
CLIP1-210ENST00000538120 C8orf86Q6ZUL3 223 aa8.74□□□□□ -1.01
CLIP1-210ENST00000538120 OR2T10Q8NGZ9 312 aa8.74□□□□□ -1.01
CLIP1-210ENST00000538120 OR4A16Q8NH70 328 aa8.74□□□□□ -1.01
CLIP1-210ENST00000538120 H1FXQ92522 213 aaKnown RBP8.74□□□□□ -1.01
CLIP1-210ENST00000538120 ADTRPQ96IZ2 230 aa8.74□□□□□ -1.01
CLIP1-210ENST00000538120 DERL1Q9BUN8 251 aa8.74□□□□□ -1.01
CLIP1-210ENST00000538120 PKDREJQ9NTG1 2253 aa8.74□□□□□ -1.01
CLIP1-210ENST00000538120 DOCK11Q5JSL3 2073 aa8.73□□□□□ -1.01
CLIP1-210ENST00000538120 IL6RP08887 468 aaPredicted RBP8.73□□□□□ -1.01
CLIP1-210ENST00000538120 ERVK-16P61578 105 aa8.73□□□□□ -1.01
CLIP1-210ENST00000538120 TEX38Q6PEX7 206 aa8.73□□□□□ -1.01
CLIP1-210ENST00000538120 MRPL41Q8IXM3 137 aaKnown RBP8.73□□□□□ -1.01
CLIP1-210ENST00000538120 NOL4LQ96MY1 436 aaPredicted RBP8.73□□□□□ -1.01
CLIP1-210ENST00000538120 H0Y8G0 127 aa8.73□□□□□ -1.01
CLIP1-210ENST00000538120 GGCTO75223 188 aaKnown RBP8.73□□□□□ -1.01
CLIP1-210ENST00000538120 GCGP01275 180 aa8.73□□□□□ -1.01
CLIP1-210ENST00000538120 UBE2G2P60604 165 aa8.73□□□□□ -1.01
CLIP1-210ENST00000538120 POU2AF1Q16633 256 aa8.73□□□□□ -1.01
CLIP1-210ENST00000538120 ATP6V1FQ16864 119 aa8.73□□□□□ -1.01
CLIP1-210ENST00000538120 VWC2Q2TAL6 325 aa8.73□□□□□ -1.01
CLIP1-210ENST00000538120 TMEM155Q4W5P6 130 aa8.73□□□□□ -1.01
CLIP1-210ENST00000538120 FAM78BQ5VT40 261 aa8.73□□□□□ -1.01
CLIP1-210ENST00000538120 OR4A47Q6IF82 309 aa8.73□□□□□ -1.01
CLIP1-210ENST00000538120 TMEM256Q8N2U0 113 aa8.73□□□□□ -1.01
CLIP1-210ENST00000538120 C11orf42Q8N5U0 333 aa8.73□□□□□ -1.01
CLIP1-210ENST00000538120 ZNF114Q8NC26 417 aa8.73□□□□□ -1.01
CLIP1-210ENST00000538120 ZNF596Q8TC21 504 aa8.73□□□□□ -1.01
CLIP1-210ENST00000538120 ACY3Q96HD9 319 aa8.73□□□□□ -1.01
CLIP1-210ENST00000538120 NPCDR1Q9BY65 106 aa8.73□□□□□ -1.01
CLIP1-210ENST00000538120 CHD8Q9HCK8 2581 aa8.72□□□□□ -1.01
CLIP1-210ENST00000538120 SRRM4A7MD48 611 aaKnown RBP8.72□□□□□ -1.01
CLIP1-210ENST00000538120 IGKV1-16P04430 117 aa8.72□□□□□ -1.01
CLIP1-210ENST00000538120 IL3RAP26951 378 aa8.72□□□□□ -1.01
CLIP1-210ENST00000538120 ATP5G3P48201 142 aa8.72□□□□□ -1.01
CLIP1-210ENST00000538120 OR10P1Q8NGE3 313 aa8.72□□□□□ -1.01
CLIP1-210ENST00000538120 TMEM147Q9BVK8 224 aa8.72□□□□□ -1.01
CLIP1-210ENST00000538120 CBLN4Q9NTU7 201 aa8.72□□□□□ -1.01
CLIP1-210ENST00000538120 TIMM9Q9Y5J7 89 aa8.72□□□□□ -1.01
CLIP1-210ENST00000538120 ITPR1Q14643 2758 aa8.72□□□□□ -1.01
CLIP1-210ENST00000538120 C15orf61A6NNL5 157 aa8.72□□□□□ -1.01
CLIP1-210ENST00000538120 TMEM238C9JI98 176 aa8.72□□□□□ -1.01
CLIP1-210ENST00000538120 C11orf94C9JXX5 98 aa8.72□□□□□ -1.01
CLIP1-210ENST00000538120 PPOXP50336 477 aa8.72□□□□□ -1.01
CLIP1-210ENST00000538120 NUTF2P61970 127 aaKnown RBP8.72□□□□□ -1.01
CLIP1-210ENST00000538120 ZNF841Q6ZN19 808 aa8.72□□□□□ -1.01
CLIP1-210ENST00000538120 SMIM15Q7Z3B0 74 aa8.72□□□□□ -1.01
CLIP1-210ENST00000538120 TMEM18Q96B42 140 aa8.72□□□□□ -1.01
CLIP1-210ENST00000538120 SNHG12Q9BXW3 62 aa8.72□□□□□ -1.01
CLIP1-210ENST00000538120 MRPL20Q9BYC9 149 aaKnown RBP8.72□□□□□ -1.01
CLIP1-210ENST00000538120 TCF19Q9Y242 345 aa8.72□□□□□ -1.01
CLIP1-210ENST00000538120 HCFC1P51610 2035 aa8.72□□□□□ -1.01
CLIP1-210ENST00000538120 MYOD1P15172 320 aa8.71□□□□□ -1.01
CLIP1-210ENST00000538120 CNN1P51911 297 aaKnown RBP8.71□□□□□ -1.01
CLIP1-210ENST00000538120 GNB1P62873 340 aa8.71□□□□□ -1.01
CLIP1-210ENST00000538120 DIAPH2-AS1Q14236 149 aa8.71□□□□□ -1.01
CLIP1-210ENST00000538120 LHFPL4Q7Z7J7 247 aa8.71□□□□□ -1.01
CLIP1-210ENST00000538120 LINC01551Q86U37 167 aa8.71□□□□□ -1.01
CLIP1-210ENST00000538120 GBGT1Q8N5D6 347 aa8.71□□□□□ -1.01
CLIP1-210ENST00000538120 LINC00311Q8N616 119 aa8.71□□□□□ -1.01
CLIP1-210ENST00000538120 BEND2Q8NDZ0 799 aa8.71□□□□□ -1.01
CLIP1-210ENST00000538120 C22orf15Q8WYQ4 148 aa8.71□□□□□ -1.01
CLIP1-210ENST00000538120 ZNF479Q96JC4 524 aa8.71□□□□□ -1.01
CLIP1-210ENST00000538120 TMEM14BQ9NUH8 114 aa8.71□□□□□ -1.01
CLIP1-210ENST00000538120 FOXA2Q9Y261 457 aaPredicted RBP8.71□□□□□ -1.01
CLIP1-210ENST00000538120 PRSS46E5RG02 174 aa8.71□□□□□ -1.02
CLIP1-210ENST00000538120 J3QR06 171 aa8.71□□□□□ -1.02
CLIP1-210ENST00000538120 RRHO14718 337 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms