RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 IGHMP01871 453 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 MRPL3P09001 348 aaKnown RBP4.47□□□□□ -1.69
CD44-236ENST00000533222 FAM90A13PP0C7W8 464 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 FAM90A24PP0C7X0 464 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 ZNF688P0C7X2 276 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 P0DMU3 169 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 FAM231AP0DMU4 169 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 FAM231CP0DMU5 169 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 LINC00694P0DN24 101 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 GP9P14770 177 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 MPV17P39210 176 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 PTGDSP41222 190 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 RPS11P62280 158 aaKnown RBP eCLIP4.47□□□□□ -1.69
CD44-236ENST00000533222 GNG5P63218 68 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 CDKN3Q16667 212 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 IBA57Q5T440 356 aaKnown RBP4.47□□□□□ -1.69
CD44-236ENST00000533222 ASPHD1Q5U4P2 390 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 FAM166AQ6J272 317 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 LCN12Q6JVE5 192 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 TMEM136Q6ZRR5 245 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 MOB3BQ86TA1 216 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 FBXL14Q8N1E6 418 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 GPR21Q99679 349 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 TMEM204Q9BSN7 226 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 CLEC7AQ9BXN2 247 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 PARP12Q9H0J9 701 aaKnown RBP4.47□□□□□ -1.69
CD44-236ENST00000533222 SLC39A9Q9NUM3 307 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 R4GN57 208 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 SSC5DA1L4H1 1573 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 KIF26AQ9ULI4 1882 aaPredicted RBP4.47□□□□□ -1.69
CD44-236ENST00000533222 SCN5AQ14524 2016 aa4.46□□□□□ -1.69
CD44-236ENST00000533222 RALGAPA2Q2PPJ7 1873 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 A0A087X0K7 114 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 TRAV24A0A0B4J272 114 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 TRBV5-5A0A0J9YX44 114 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 TRBV7-7A0A0K0K1E9 115 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 A6NIN4 97 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 C2orf70A6NJV1 201 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 LINC01619G3V211 115 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 K7EN84 100 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 SLC17A2O00624 439 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 DPM2O94777 84 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 NDUFC2O95298 119 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 CLDN7O95471 211 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 LGALS1P09382 135 aaKnown RBP4.46□□□□□ -1.7
CD44-236ENST00000533222 IGLC6P0CF74 106 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 HLA-DMBP28068 263 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 PEBP1P30086 187 aaKnown RBP4.46□□□□□ -1.7
CD44-236ENST00000533222 NMUP48645 174 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 PSMB3P49720 205 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 CCL11P51671 97 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 RPL38P63173 70 aaKnown RBP4.46□□□□□ -1.7
CD44-236ENST00000533222 PLGLB1Q02325 96 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 ZNF90Q03938 601 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 DIAPH2-AS1Q14236 149 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 RNPS1Q15287 305 aaKnown RBP4.46□□□□□ -1.7
CD44-236ENST00000533222 KIAA1644Q3SXP7 199 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 LINC01620Q4KN68 170 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 C1orf195Q5TG92 126 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 C2orf91Q6ZV80 131 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 TEN1Q86WV5 123 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 C3orf22Q8N5N4 141 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 METTL27Q8N6F8 245 aaPredicted RBP4.46□□□□□ -1.7
CD44-236ENST00000533222 MORN4Q8NDC4 146 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 CHCHD1Q96BP2 118 aaKnown RBP4.46□□□□□ -1.7
CD44-236ENST00000533222 ATXN7L3BQ96GX2 97 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 SLC25A44Q96H78 314 aaPredicted RBP4.46□□□□□ -1.7
CD44-236ENST00000533222 C9orf85Q96MD7 179 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 PRELID3AQ96N28 172 aa4.46□□□□□ -1.7
CD44-236ENST00000533222 CHCHD2Q9Y6H1 151 aaPredicted RBP4.46□□□□□ -1.7
CD44-236ENST00000533222 BRWD3Q6RI45 1802 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 TRBV5-7A0A0A0MS05 114 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 NSG1A0A0A6YYJ2 146 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 IGHV1-24A0A0C4DH33 117 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 C3orf85A0A1B0GTC6 90 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 TEX50A0A1B0GTY4 177 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 LOC107986453A0A1B0GWG9 222 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 M0R129 80 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 CHEK1O14757 476 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 SH2D1BO14796 132 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 MPDU1O75352 247 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 ATP5LO75964 103 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 APCSP02743 223 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 B4GALT1P15291 398 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 SP4Q02446 784 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 TGFBR3Q03167 851 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 PRDX1Q06830 199 aaKnown RBP4.45□□□□□ -1.7
CD44-236ENST00000533222 LOXL1Q08397 574 aaPredicted RBP4.45□□□□□ -1.7
CD44-236ENST00000533222 EBI3Q14213 229 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 ZNF791Q3KP31 576 aaPredicted RBP4.45□□□□□ -1.7
CD44-236ENST00000533222 PHLDA2Q53GA4 152 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 NMSQ5H8A3 153 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 MORN5Q5VZ52 161 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 FAM19A1Q7Z5A9 133 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 LHFPL1Q86WI0 220 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 STHQ8IWL8 128 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 GAPTQ8N292 157 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 ABHD12Q8N2K0 398 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 C15orf53Q8NAA6 179 aa4.45□□□□□ -1.7
CD44-236ENST00000533222 SAP25Q8TEE9 199 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms