RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 SURF2Q15527 256 aaPredicted RBP9.99□□□□□ -0.81
VPS28-211ENST00000530790 SP6Q3SY56 376 aa9.99□□□□□ -0.81
VPS28-211ENST00000530790 SPINK9Q5DT21 86 aa9.99□□□□□ -0.81
VPS28-211ENST00000530790 LINC00322Q6ZN03 302 aaPredicted RBP9.99□□□□□ -0.81
VPS28-211ENST00000530790 PINX1Q96BK5 328 aaKnown RBP9.99□□□□□ -0.81
VPS28-211ENST00000530790 RRNAD1Q96FB5 475 aaKnown RBP9.99□□□□□ -0.81
VPS28-211ENST00000530790 C5orf66Q9H5L9 145 aa9.99□□□□□ -0.81
VPS28-211ENST00000530790 TEX13DA0A0J9YY54 714 aaPredicted RBP9.98□□□□□ -0.81
VPS28-211ENST00000530790 RBMY1BA6NDE4 496 aaKnown RBP9.98□□□□□ -0.81
VPS28-211ENST00000530790 RBMY1EA6NEQ0 496 aaKnown RBP9.98□□□□□ -0.81
VPS28-211ENST00000530790 C15orf62A8K5M9 175 aa9.98□□□□□ -0.81
VPS28-211ENST00000530790 H3BMQ9 156 aa9.98□□□□□ -0.81
VPS28-211ENST00000530790 ST8SIA3O43173 380 aa9.98□□□□□ -0.81
VPS28-211ENST00000530790 MT-CO2P00403 227 aa9.98□□□□□ -0.81
VPS28-211ENST00000530790 RBMY1DP0C7P1 496 aaKnown RBP9.98□□□□□ -0.81
VPS28-211ENST00000530790 SNCAP37840 140 aa9.98□□□□□ -0.81
VPS28-211ENST00000530790 MFAP4P55083 255 aa9.98□□□□□ -0.81
VPS28-211ENST00000530790 CASC10Q5T4H9 136 aa9.98□□□□□ -0.81
VPS28-211ENST00000530790 OR4C16Q8NGL9 310 aa9.98□□□□□ -0.81
VPS28-211ENST00000530790 TXN2Q99757 166 aa9.98□□□□□ -0.81
VPS28-211ENST00000530790 SPAG8Q99932 426 aaPredicted RBP9.98□□□□□ -0.81
VPS28-211ENST00000530790 PRRT1Q99946 306 aa9.98□□□□□ -0.81
VPS28-211ENST00000530790 EDA2RQ9HAV5 297 aa9.98□□□□□ -0.81
VPS28-211ENST00000530790 RETNQ9HD89 108 aa9.98□□□□□ -0.81
VPS28-211ENST00000530790 IGHV3OR16-8A0A075B7F1 116 aa9.97□□□□□ -0.81
VPS28-211ENST00000530790 A0A0B4J293 547 aa9.97□□□□□ -0.81
VPS28-211ENST00000530790 K7EMT4 169 aa9.97□□□□□ -0.81
VPS28-211ENST00000530790 GNG7O60262 68 aa9.97□□□□□ -0.81
VPS28-211ENST00000530790 CTSGP08311 255 aa9.97□□□□□ -0.81
VPS28-211ENST00000530790 OR5AC1P0C628 307 aa9.97□□□□□ -0.81
VPS28-211ENST00000530790 FCGR2BP31994 310 aaPredicted RBP9.97□□□□□ -0.81
VPS28-211ENST00000530790 LAMTOR1Q6IAA8 161 aa9.97□□□□□ -0.81
VPS28-211ENST00000530790 FAM110AQ9BQ89 295 aa9.97□□□□□ -0.81
VPS28-211ENST00000530790 SLIRPQ9GZT3 109 aaKnown RBP9.97□□□□□ -0.81
VPS28-211ENST00000530790 TMEM222Q9H0R3 208 aa9.97□□□□□ -0.81
VPS28-211ENST00000530790 HIPK2Q9H2X6 1198 aa9.97□□□□□ -0.81
VPS28-211ENST00000530790 NAA60Q9H7X0 242 aa9.97□□□□□ -0.81
VPS28-211ENST00000530790 ENY2Q9NPA8 101 aa9.97□□□□□ -0.81
VPS28-211ENST00000530790 RSL24D1Q9UHA3 163 aaKnown RBP9.97□□□□□ -0.81
VPS28-211ENST00000530790 A0A0G2JRQ6 117 aa9.96□□□□□ -0.82
VPS28-211ENST00000530790 INS-IGF2F8WCM5 200 aa9.96□□□□□ -0.82
VPS28-211ENST00000530790 CORTO00230 105 aa9.96□□□□□ -0.82
VPS28-211ENST00000530790 TSPAN4O14817 238 aa9.96□□□□□ -0.82
VPS28-211ENST00000530790 ZNF207O43670 478 aaKnown RBP9.96□□□□□ -0.82
VPS28-211ENST00000530790 GSTZ1O43708 216 aaPredicted RBP9.96□□□□□ -0.82
VPS28-211ENST00000530790 YIF1AO95070 293 aa9.96□□□□□ -0.82
VPS28-211ENST00000530790 IGHV3-48P01763 117 aa9.96□□□□□ -0.82
VPS28-211ENST00000530790 SUB1P53999 127 aaKnown RBP eCLIP9.96□□□□□ -0.82
VPS28-211ENST00000530790 FAM219AQ8IW50 185 aa9.96□□□□□ -0.82
VPS28-211ENST00000530790 RBPMSQ93062 196 aaKnown RBP9.96□□□□□ -0.82
VPS28-211ENST00000530790 GGTLC1Q9BX51 225 aa9.96□□□□□ -0.82
VPS28-211ENST00000530790 ANKRD20A5PA0PJZ0 165 aa9.95□□□□□ -0.82
VPS28-211ENST00000530790 CDS2O95674 445 aa9.95□□□□□ -0.82
VPS28-211ENST00000530790 NPBWR1P48145 328 aa9.95□□□□□ -0.82
VPS28-211ENST00000530790 DHODHQ02127 395 aa9.95□□□□□ -0.82
VPS28-211ENST00000530790 ZFAND6Q6FIF0 208 aa9.95□□□□□ -0.82
VPS28-211ENST00000530790 DUSP18Q8NEJ0 188 aa9.95□□□□□ -0.82
VPS28-211ENST00000530790 OR51S1Q8NGJ8 323 aa9.95□□□□□ -0.82
VPS28-211ENST00000530790 MCFD2Q8NI22 146 aa9.95□□□□□ -0.82
VPS28-211ENST00000530790 OR10C1Q96KK4 312 aa9.95□□□□□ -0.82
VPS28-211ENST00000530790 RTBDNQ9BSG5 229 aaPredicted RBP9.95□□□□□ -0.82
VPS28-211ENST00000530790 NXF2Q9GZY0 626 aaKnown RBP9.95□□□□□ -0.82
VPS28-211ENST00000530790 SCP2D1Q9UJQ7 156 aa9.95□□□□□ -0.82
VPS28-211ENST00000530790 LOC102724200A0A096LPH7 203 aaPredicted RBP9.94□□□□□ -0.82
VPS28-211ENST00000530790 IGHV7-4-1A0A0J9YVY3 117 aa9.94□□□□□ -0.82
VPS28-211ENST00000530790 FABP12A6NFH5 140 aa9.94□□□□□ -0.82
VPS28-211ENST00000530790 OR4C46A6NHA9 309 aa9.94□□□□□ -0.82
VPS28-211ENST00000530790 CRYM-AS1A6NIL9 109 aa9.94□□□□□ -0.82
VPS28-211ENST00000530790 RNASE2P10153 161 aaKnown RBP9.94□□□□□ -0.82
VPS28-211ENST00000530790 TNFSF8P32971 234 aa9.94□□□□□ -0.82
VPS28-211ENST00000530790 ETV6P41212 452 aa9.94□□□□□ -0.82
VPS28-211ENST00000530790 TMEM116Q8NCL8 245 aa9.94□□□□□ -0.82
VPS28-211ENST00000530790 LHFPL5Q8TAF8 219 aa9.94□□□□□ -0.82
VPS28-211ENST00000530790 GLYATL2Q8WU03 294 aa9.94□□□□□ -0.82
VPS28-211ENST00000530790 GINS3Q9BRX5 216 aa9.94□□□□□ -0.82
VPS28-211ENST00000530790 MCUBQ9NWR8 336 aa9.94□□□□□ -0.82
VPS28-211ENST00000530790 SMPXQ9UHP9 88 aa9.94□□□□□ -0.82
VPS28-211ENST00000530790 GPR132Q9UNW8 380 aa9.94□□□□□ -0.82
VPS28-211ENST00000530790 CCDC160A6NGH7 325 aa9.93□□□□□ -0.82
VPS28-211ENST00000530790 SCGB2A1O75556 95 aa9.93□□□□□ -0.82
VPS28-211ENST00000530790 BMI1P35226 326 aa9.93□□□□□ -0.82
VPS28-211ENST00000530790 OPRK1P41145 380 aa9.93□□□□□ -0.82
VPS28-211ENST00000530790 SPCS3P61009 180 aa9.93□□□□□ -0.82
VPS28-211ENST00000530790 TMEM268Q5VZI3 342 aa9.93□□□□□ -0.82
VPS28-211ENST00000530790 ZNF414Q96IQ9 312 aa9.93□□□□□ -0.82
VPS28-211ENST00000530790 SCGB3A2Q96PL1 93 aa9.93□□□□□ -0.82
VPS28-211ENST00000530790 RHPN1-AS1Q9BWJ2 59 aa9.93□□□□□ -0.82
VPS28-211ENST00000530790 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.93□□□□□ -0.82
VPS28-211ENST00000530790 CACNG5Q9UF02 275 aa9.93□□□□□ -0.82
VPS28-211ENST00000530790 UBQLN2Q9UHD9 624 aa9.93□□□□□ -0.82
VPS28-211ENST00000530790 DNAH7Q8WXX0 4024 aa9.92□□□□□ -0.82
VPS28-211ENST00000530790 IGHV3-49A0A0A0MS15 119 aa9.92□□□□□ -0.82
VPS28-211ENST00000530790 TRAV14DV4A0A0A6YYC5 116 aa9.92□□□□□ -0.82
VPS28-211ENST00000530790 CHEK1O14757 476 aa9.92□□□□□ -0.82
VPS28-211ENST00000530790 FAUP35544 74 aaKnown RBP9.92□□□□□ -0.82
VPS28-211ENST00000530790 AARDQ4LEZ3 155 aa9.92□□□□□ -0.82
VPS28-211ENST00000530790 PVRIGQ6DKI7 326 aa9.92□□□□□ -0.82
VPS28-211ENST00000530790 ZNF600Q6ZNG1 722 aa9.92□□□□□ -0.82
VPS28-211ENST00000530790 Q6ZRM9 215 aa9.92□□□□□ -0.82
VPS28-211ENST00000530790 SELENOHQ8IZQ5 122 aaKnown RBP9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 107.8 ms