RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 SLC25A44Q96H78 314 aaPredicted RBP3.84□□□□□ -1.79
PCF11-202ENST00000528336 C18orf15Q96N68 181 aa3.84□□□□□ -1.79
PCF11-202ENST00000528336 TSPAN32Q96QS1 320 aa3.84□□□□□ -1.79
PCF11-202ENST00000528336 CHST6Q9GZX3 395 aa3.84□□□□□ -1.79
PCF11-202ENST00000528336 PLEKHF2Q9H8W4 249 aa3.84□□□□□ -1.79
PCF11-202ENST00000528336 NOX3Q9HBY0 568 aa3.84□□□□□ -1.79
PCF11-202ENST00000528336 DAZ1Q9NQZ3 744 aaKnown RBP3.84□□□□□ -1.79
PCF11-202ENST00000528336 DAZ3Q9NR90 486 aaKnown RBP3.84□□□□□ -1.79
PCF11-202ENST00000528336 LINC00527Q9UJ94 153 aa3.84□□□□□ -1.79
PCF11-202ENST00000528336 SSR3Q9UNL2 185 aa3.84□□□□□ -1.79
PCF11-202ENST00000528336 POMPQ9Y244 141 aa3.84□□□□□ -1.79
PCF11-202ENST00000528336 TNRC6BQ9UPQ9 1833 aaKnown RBP3.84□□□□□ -1.8
PCF11-202ENST00000528336 PCDH15Q96QU1 1955 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 GTF3C1Q12789 2109 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 BORCS7-ASMTA0A0B4J1R7 106 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 A0A1B0GX51 115 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 C5orf63A6NC05 138 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 OR51F1A6NGY5 319 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 TRAPPC2LH3BP13 241 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 M0R1X1 148 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 BANF1O75531 89 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 TNFP01375 233 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 IL3RAP26951 378 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 ELOCQ15369 112 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 C12orf74Q32Q52 190 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 SPANXN3Q5MJ09 141 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 IBA57Q5T440 356 aaKnown RBP3.83□□□□□ -1.8
PCF11-202ENST00000528336 ZNF675Q8TD23 568 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 LMX1AQ8TE12 382 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 DNAJC9Q8WXX5 260 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 GALMQ96C23 342 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 GPR146Q96CH1 333 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 RPUSD4Q96CM3 377 aaKnown RBP3.83□□□□□ -1.8
PCF11-202ENST00000528336 CNBD2Q96M20 576 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 CCDC115Q96NT0 180 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 SERPINI1Q99574 410 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 C12orf57Q99622 126 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 TMEM70Q9BUB7 260 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 TCEAL2Q9H3H9 227 aaPredicted RBP3.83□□□□□ -1.8
PCF11-202ENST00000528336 COPZ2Q9P299 210 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 PCYT1BQ9Y5K3 369 aaPredicted RBP3.83□□□□□ -1.8
PCF11-202ENST00000528336 PLXNA2O75051 1894 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 CABIN1Q9Y6J0 2220 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 CFAP54Q96N23 3096 aa3.83□□□□□ -1.8
PCF11-202ENST00000528336 BPTFQ12830 3046 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 PI4KAP42356 2102 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 TRAV8-1A0A0A6YYK1 113 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 CIB4A0PJX0 185 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 KNCNA6PVL3 124 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 C5orf58C9J3I9 102 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.82□□□□□ -1.8
PCF11-202ENST00000528336 IGLV2-8P01709 118 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 APOA2P02652 100 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 PSG2P11465 335 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 RPS3P23396 243 aaKnown RBP eCLIP3.82□□□□□ -1.8
PCF11-202ENST00000528336 NCALDP61601 193 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 BTN1A1Q13410 526 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 ORMDL2Q53FV1 153 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 ZNF773Q6PK81 442 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 AGTRAPQ6RW13 159 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 IL34Q6ZMJ4 242 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 GKN2Q86XP6 184 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 ZNF664Q8N3J9 261 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 RNF175Q8N4F7 328 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 C12orf45Q8N5I9 185 aaPredicted RBP3.82□□□□□ -1.8
PCF11-202ENST00000528336 TMEM75Q8N9X5 138 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 OR4C6Q8NH72 309 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 ORAOV1Q8WV07 137 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 FRZBQ92765 325 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 PTX4Q96A99 478 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 ZNF799Q96GE5 643 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 REEP6Q96HR9 211 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 NRIP2Q9BQI9 281 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 GGACTQ9BVM4 153 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 TMEM126AQ9H061 195 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 FIS1Q9Y3D6 152 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 DMXL1Q9Y485 3027 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 DOCK9Q9BZ29 2069 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 SCN8AQ9UQD0 1980 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 CEP192Q8TEP8 1941 aa3.82□□□□□ -1.8
PCF11-202ENST00000528336 ZNF106Q9H2Y7 1883 aaKnown RBP3.81□□□□□ -1.8
PCF11-202ENST00000528336 CNOT1A5YKK6 2376 aaKnown RBP3.81□□□□□ -1.8
PCF11-202ENST00000528336 A0A0J9YXY3 114 aa3.81□□□□□ -1.8
PCF11-202ENST00000528336 PINLYPA6NC86 204 aa3.81□□□□□ -1.8
PCF11-202ENST00000528336 OR4C45A6NMZ5 311 aa3.81□□□□□ -1.8
PCF11-202ENST00000528336 KRBOX1C9JBD0 128 aa3.81□□□□□ -1.8
PCF11-202ENST00000528336 OR1I1O60431 355 aa3.81□□□□□ -1.8
PCF11-202ENST00000528336 POP7O75817 140 aaKnown RBP3.81□□□□□ -1.8
PCF11-202ENST00000528336 SUPT7LO94864 414 aa3.81□□□□□ -1.8
PCF11-202ENST00000528336 ZNF682O95780 498 aa3.81□□□□□ -1.8
PCF11-202ENST00000528336 HLA-DRB1P01911 266 aa3.81□□□□□ -1.8
PCF11-202ENST00000528336 C1QAP02745 245 aa3.81□□□□□ -1.8
PCF11-202ENST00000528336 OR12D1P0DN82 309 aa3.81□□□□□ -1.8
PCF11-202ENST00000528336 CSRP1P21291 193 aaKnown RBP3.81□□□□□ -1.8
PCF11-202ENST00000528336 CNTFRP26992 372 aa3.81□□□□□ -1.8
PCF11-202ENST00000528336 RPS20P60866 119 aaKnown RBP3.81□□□□□ -1.8
PCF11-202ENST00000528336 KCNJ8Q15842 424 aa3.81□□□□□ -1.8
PCF11-202ENST00000528336 SSX1Q16384 188 aa3.81□□□□□ -1.8
PCF11-202ENST00000528336 DEFB133Q30KQ1 61 aa3.81□□□□□ -1.8
PCF11-202ENST00000528336 ABCA11PQ4W5N1 156 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms