RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 CRYBB3P26998 211 aa17.22■□□□□ 0.35
VPS28-205ENST00000526204 SUB1P53999 127 aaKnown RBP eCLIP17.22■□□□□ 0.35
VPS28-205ENST00000526204 ZMAT5Q9UDW3 170 aaKnown RBP17.22■□□□□ 0.35
VPS28-205ENST00000526204 OR10J4P0C629 311 aa17.21■□□□□ 0.35
VPS28-205ENST00000526204 REG1BP48304 166 aa17.21■□□□□ 0.35
VPS28-205ENST00000526204 ERVFC1-1P60608 527 aa17.21■□□□□ 0.35
VPS28-205ENST00000526204 RPEL1Q2QD12 228 aa17.21■□□□□ 0.35
VPS28-205ENST00000526204 MRPL41Q8IXM3 137 aaKnown RBP17.21■□□□□ 0.35
VPS28-205ENST00000526204 RNASE6Q93091 150 aaKnown RBP17.21■□□□□ 0.35
VPS28-205ENST00000526204 KAAG1Q9UBP8 84 aa17.21■□□□□ 0.35
VPS28-205ENST00000526204 ZNF835Q9Y2P0 537 aa17.21■□□□□ 0.35
VPS28-205ENST00000526204 WASHC3Q9Y3C0 194 aa17.21■□□□□ 0.35
VPS28-205ENST00000526204 ICE1Q9Y2F5 2266 aa17.21■□□□□ 0.35
VPS28-205ENST00000526204 BOD1L1Q8NFC6 3051 aa17.21■□□□□ 0.35
VPS28-205ENST00000526204 ZNF137PP52743 207 aa17.21■□□□□ 0.35
VPS28-205ENST00000526204 CENPWQ5EE01 88 aa17.21■□□□□ 0.35
VPS28-205ENST00000526204 ST6GALNAC6Q969X2 333 aa17.21■□□□□ 0.35
VPS28-205ENST00000526204 CEP250Q9BV73 2442 aa17.21■□□□□ 0.34
VPS28-205ENST00000526204 SLC17A3O00476 420 aa17.2■□□□□ 0.34
VPS28-205ENST00000526204 PAX1P15863 534 aa17.2■□□□□ 0.34
VPS28-205ENST00000526204 COL8A2P25067 703 aa17.2■□□□□ 0.34
VPS28-205ENST00000526204 RPL19P84098 196 aaKnown RBP17.2■□□□□ 0.34
VPS28-205ENST00000526204 TIGITQ495A1 244 aa17.2■□□□□ 0.34
VPS28-205ENST00000526204 LYPD2Q6UXB3 125 aa17.2■□□□□ 0.34
VPS28-205ENST00000526204 DNAJC4Q9NNZ3 241 aa17.2■□□□□ 0.34
VPS28-205ENST00000526204 A0A087X0M5 115 aa17.2■□□□□ 0.34
VPS28-205ENST00000526204 A0A1B0GX30 115 aa17.2■□□□□ 0.34
VPS28-205ENST00000526204 MC5RP33032 325 aa17.2■□□□□ 0.34
VPS28-205ENST00000526204 ADMP35318 185 aa17.2■□□□□ 0.34
VPS28-205ENST00000526204 LGALS4P56470 323 aa17.2■□□□□ 0.34
VPS28-205ENST00000526204 SELENOTP62341 195 aa17.2■□□□□ 0.34
VPS28-205ENST00000526204 Q8NA96 180 aa17.2■□□□□ 0.34
VPS28-205ENST00000526204 SH3BGRL2Q9UJC5 107 aa17.2■□□□□ 0.34
VPS28-205ENST00000526204 YLPM1P49750 1951 aaKnown RBP17.19■□□□□ 0.34
VPS28-205ENST00000526204 OR2T6Q8NHC8 308 aa17.19■□□□□ 0.34
VPS28-205ENST00000526204 C14orf144Q96I85 54 aa17.19■□□□□ 0.34
VPS28-205ENST00000526204 PRO1933Q9H354 126 aa17.19■□□□□ 0.34
VPS28-205ENST00000526204 V9GYV3 84 aa17.19■□□□□ 0.34
VPS28-205ENST00000526204 PSMB11A5LHX3 300 aa17.18■□□□□ 0.34
VPS28-205ENST00000526204 GGTLC3B5MD39 225 aa17.18■□□□□ 0.34
VPS28-205ENST00000526204 LOXP28300 417 aaPredicted RBP17.18■□□□□ 0.34
VPS28-205ENST00000526204 VMA21Q3ZAQ7 101 aa17.18■□□□□ 0.34
VPS28-205ENST00000526204 TGIF2LXQ8IUE1 241 aa17.18■□□□□ 0.34
VPS28-205ENST00000526204 MMD2Q8IY49 270 aa17.18■□□□□ 0.34
VPS28-205ENST00000526204 NOL4LQ96MY1 436 aaPredicted RBP17.18■□□□□ 0.34
VPS28-205ENST00000526204 DYNLRB1Q9NP97 96 aa17.18■□□□□ 0.34
VPS28-205ENST00000526204 DCHS1Q96JQ0 3298 aa17.18■□□□□ 0.34
VPS28-205ENST00000526204 TRBV9A0A0B4J1U6 114 aa17.18■□□□□ 0.34
VPS28-205ENST00000526204 ZNF705GA8MUZ8 300 aaPredicted RBP17.18■□□□□ 0.34
VPS28-205ENST00000526204 E7EUB6 86 aa17.18■□□□□ 0.34
VPS28-205ENST00000526204 IGLV2-23P01705 113 aa17.18■□□□□ 0.34
VPS28-205ENST00000526204 DLX6P56179 175 aa17.18■□□□□ 0.34
VPS28-205ENST00000526204 SUMO1P63165 101 aaKnown RBP17.18■□□□□ 0.34
VPS28-205ENST00000526204 WT1-ASQ06250 92 aa17.18■□□□□ 0.34
VPS28-205ENST00000526204 IQCJQ1A5X6 159 aa17.18■□□□□ 0.34
VPS28-205ENST00000526204 TMEM155Q4W5P6 130 aa17.18■□□□□ 0.34
VPS28-205ENST00000526204 REC114Q7Z4M0 266 aa17.18■□□□□ 0.34
VPS28-205ENST00000526204 OR1L4Q8NGR5 311 aa17.18■□□□□ 0.34
VPS28-205ENST00000526204 OSTCQ9NRP0 149 aa17.18■□□□□ 0.34
VPS28-205ENST00000526204 CTSZQ9UBR2 303 aa17.18■□□□□ 0.34
VPS28-205ENST00000526204 WFIKKN1Q96NZ8 548 aa17.17■□□□□ 0.34
VPS28-205ENST00000526204 ZNF430Q9H8G1 570 aaPredicted RBP17.17■□□□□ 0.34
VPS28-205ENST00000526204 AKAP13Q12802 2813 aa17.17■□□□□ 0.34
VPS28-205ENST00000526204 CGB1A6NKQ9 187 aa17.17■□□□□ 0.34
VPS28-205ENST00000526204 OR5I1Q13606 314 aa17.17■□□□□ 0.34
VPS28-205ENST00000526204 DIAPH2-AS1Q14236 149 aa17.17■□□□□ 0.34
VPS28-205ENST00000526204 FAM167A-AS1Q96KT0 104 aa17.17■□□□□ 0.34
VPS28-205ENST00000526204 COL25A1Q9BXS0 654 aaPredicted RBP17.17■□□□□ 0.34
VPS28-205ENST00000526204 CUL9Q8IWT3 2517 aa17.16■□□□□ 0.34
VPS28-205ENST00000526204 ISLRO14498 428 aa17.16■□□□□ 0.34
VPS28-205ENST00000526204 CBLN1P23435 193 aa17.16■□□□□ 0.34
VPS28-205ENST00000526204 LGALS7P47929 136 aa17.16■□□□□ 0.34
VPS28-205ENST00000526204 PPOXP50336 477 aa17.16■□□□□ 0.34
VPS28-205ENST00000526204 TMEM256Q8N2U0 113 aa17.16■□□□□ 0.34
VPS28-205ENST00000526204 OR1L6Q8NGR2 347 aa17.16■□□□□ 0.34
VPS28-205ENST00000526204 SLC25A2Q9BXI2 301 aa17.16■□□□□ 0.34
VPS28-205ENST00000526204 MRPL18Q9H0U6 180 aaKnown RBP17.16■□□□□ 0.34
VPS28-205ENST00000526204 PTPRZ1P23471 2315 aaPredicted RBP17.16■□□□□ 0.34
VPS28-205ENST00000526204 SHISA9B4DS77 424 aa17.15■□□□□ 0.34
VPS28-205ENST00000526204 COX7A2P2O60397 106 aa17.15■□□□□ 0.34
VPS28-205ENST00000526204 ZNF664Q8N3J9 261 aa17.15■□□□□ 0.34
VPS28-205ENST00000526204 SSUH2Q9Y2M2 353 aa17.15■□□□□ 0.34
VPS28-205ENST00000526204 TNCP24821 2201 aa17.15■□□□□ 0.34
VPS28-205ENST00000526204 TCRBV4S1A1TA0A5B7 111 aa17.15■□□□□ 0.34
VPS28-205ENST00000526204 IGHV1-8P0DP01 117 aa17.15■□□□□ 0.34
VPS28-205ENST00000526204 BPIFB3P59826 476 aa17.15■□□□□ 0.34
VPS28-205ENST00000526204 UBE2L3P68036 154 aaKnown RBP17.15■□□□□ 0.34
VPS28-205ENST00000526204 THAP8Q8NA92 274 aa17.15■□□□□ 0.34
VPS28-205ENST00000526204 NPIPB3Q92617 1050 aa17.15■□□□□ 0.34
VPS28-205ENST00000526204 GNB1LQ9BYB4 327 aa17.15■□□□□ 0.34
VPS28-205ENST00000526204 FNDC4Q9H6D8 234 aaPredicted RBP17.15■□□□□ 0.34
VPS28-205ENST00000526204 RP1L1Q8IWN7 2480 aaPredicted RBP17.15■□□□□ 0.34
VPS28-205ENST00000526204 E7EQL1 145 aa17.14■□□□□ 0.33
VPS28-205ENST00000526204 FCN1O00602 326 aa17.14■□□□□ 0.33
VPS28-205ENST00000526204 COX19Q49B96 90 aa17.14■□□□□ 0.33
VPS28-205ENST00000526204 C10orf113Q5VZT2 155 aa17.14■□□□□ 0.33
VPS28-205ENST00000526204 A8MWP6 167 aa17.14■□□□□ 0.33
VPS28-205ENST00000526204 CRISP2P16562 243 aa17.14■□□□□ 0.33
VPS28-205ENST00000526204 TAS2R60P59551 318 aa17.14■□□□□ 0.33
VPS28-205ENST00000526204 C10orf55Q5SWW7 151 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms